| Commit message (Collapse) | Author | Age | Files | Lines |
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* Fixed GH-2603, heap-buffer-overflow in H5O__linfo_decode
Verified with valgrind -v --tool=memcheck --leak-check=full h5dump POV-GH-2603
The several invalid reads shown originally are now gone.
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* Remove unused macros
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* Remove dead code for H5C__SLIST_OPT_ENABLED
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* Refactor H5C__entry_in_skip_list to package scope
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* Correct concurrency bugs when running tests, along with a bugfix & small
warning cleanup.
* Committing clang-format changes
* Allow spaces (and tabs) in VOL connector info string from environment variable.
* Parse connector name from HDF5_PLUGIN_PATH environment variable better
* Correct H5VLquery_optional to use H5VL routine instead of H5I. Also add an
error message to the failure return value from not finding a plugin.
* Play nice with existing plugin paths
* Use API routine to determine if native connector is terminal.
* Committing clang-format changes
* Make string size larger, to allow for connectors with longer names.
* Be more flexible about testing external pass through connectors, especially if
they have registered new optional operations.
* Make cache validation routines package local
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Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: AWS ParallelCluster user <ec2-user@ip-10-0-0-65.us-east-2.compute.internal>
Co-authored-by: Koziol <qkoziol@88665a374c70.ant.amazon.com>
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* Fix for github issue #2599:
As indicated in the description, memory leak is detected when running "./h5dump pov".
The problem is: when calling H5O__add_cont_msg() from H5O__chunk_deserialize(),
memory is allocated for cont_msg_info->msgs. Eventually, when the library tries to load
the continuation message via H5AC_protect() in H5O_protect(), error is
encountered due to illegal info in the continuation message.
Due to the error, H5O_protect() exits but the memory allocated for cont_msg_info->msgs is not freed.
When we figure out how to handle fuzzed files that we didn't generate,
a test needs to be added to run h5dump with the provided "pov" file.
* Add message to release notes for the fix to github issue #2599.
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* Correct concurrency bugs when running tests, along with a bugfix & small
warning cleanup.
* Committing clang-format changes
* Allow spaces (and tabs) in VOL connector info string from environment variable.
* Parse connector name from HDF5_PLUGIN_PATH environment variable better
* Correct H5VLquery_optional to use H5VL routine instead of H5I. Also add an
error message to the failure return value from not finding a plugin.
* Play nice with existing plugin paths
* Use API routine to determine if native connector is terminal.
* Committing clang-format changes
* Make string size larger, to allow for connectors with longer names.
* Be more flexible about testing external pass through connectors, especially if
they have registered new optional operations.
* Bring style closer to library's agreed coding style
* Committing clang-format changes
---------
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: AWS ParallelCluster user <ec2-user@ip-10-0-0-65.us-east-2.compute.internal>
Co-authored-by: Koziol <qkoziol@88665a374c70.ant.amazon.com>
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(#2602) (#2687)
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Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
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* Clean up content and redundant logging in comments.
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* Convert asserts to error handling in efl decode
The function that decodes external data files object header messages
would call assert() when parsing malformed files, causing applications
to crash when linked against the debug library.
This change converts these assert() calls to HDF5 error checks, so
the messages are sanity checked in both release and debug mode and
debug mode no longer crashes applications.
Also cleaned up some error handling usage and debug checks.
* Free memory on H5O efl decode errors
* Add buffer size checks to efl msg decode
* Add parentheses to math expressions
Fixes GitHub #2605
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* Avoid suppressing error output for non-tentative file opens
* Update comment about tentative file opens
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* Duplicated HDF_RESOURCES_DIR from cmake_ext_mod merge
* Typos in comments
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Fix multiple bugs with the SELECT_IOC_EVERY_NTH_RANK and
SELECT_IOC_TOTAL I/O concentrator selection strategies and add a
regression test for them
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* reviewed H5A
* Addressed various grammar issues.
* remove double words, spelling fixes
* replace the use of rawdata with raw data
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(#2512)
Forward port of 9f252f1 from #2329
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* Fix new codespell issues
* Have codespell ignore ./config/sanitizer/sanitizers.cmake
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* Remove duplicate code
Signed-off-by: Egbert Eich <eich@suse.com>
* Add test case for CVE-2021-37501
Bogus sizes in this test case causes the on-disk data size
calculation in H5O__attr_decode() to overflow so that the
calculated size becomes 0. This causes the read to overflow
and h5dump to segfault.
This test case was crafted, the test file was not directly
generated by HDF5.
Test case from:
https://github.com/ST4RF4LL/Something_Found/blob/main/HDF5_v1.13.0_h5dump_heap_overflow.md
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* Missing or misplaced entries in API reference tables #2470
* Doxy corrections
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H5L_EXT_VERSION) public (#2386)
* HDFFV-10368 (OESS-319): Move two useful macros (H5L_EXT_FLAGS_ALL and H5L_EXT_VERSION) from H5Lpkg.h to H5Lpublic.h for public usage. The test in vol.c only envokes H5Lcreate_external using the passthru VOL. To test if the macros are public, one can use them in the link creation of the passthru VOL, such as printing out their values.
* Committing clang-format changes
* Moved the test for the external link public macros (H5L_EXT_FLAGS_ALL and H5L_EXT_VERSION) from vol.c to links.c.
* Committing clang-format changes
* Minor change: changed a pointer variable to an integer.
* Committing clang-format changes
* Moved two macros (H5L_EXT_VERSION and H5L_EXT_FLAGS_ALL) to H5Ldevelop.h for only developers to use.
---------
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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loaded (#2481)
* OESS-330/HDFFV-11282: Improve failure message when a VOL connector can't be loaded. Made the error message clearer when the library can't find a plugin in the path table that contains the paths set by HDF5_PLUGIN_PATH and the default location and maybe set by H5PLxxx functions.
* Committing clang-format changes
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Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* CMake generated pkg-config file is incorrect #2259
* Fix fortran pc template
* hdf5.pc is incorrect for debug builds #1546
* Correct pkg name and lib name
* Fix typo
* Fix missing space
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make sure the underneath VOL ID is specified. (#2475)
* GitHub #2417: to avoid the pass-through VOL failing in unexpected places, make sure the underneath VOL ID is specified.
* Committing clang-format changes
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Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Mark a parameter as unused when not using a special debug define
* Check for a chunk_entry NULL pointer after using HASH_FIND
These should be the last parallel warnings so we can start building
parallel with -Werror.
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* corrected/added note about closing creation property list identifier
* removed immaterial \see APIs
* added details to H5Literate
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szip (or libaec) is currently not tested in CI. This adds szip to the
the Autotools GitHub CI actions on Linux when building with the
Autotools.
This PR also cleans up a few warnings that remained in the szip-
related code so the -Werror check will pass.
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* Include shlwapi.h explicitly
* Add shlwapi library to LINK_LIB when header is detected
Looking for StrStrIA in the shlwapi library is not reliable due
to stdcall on mingw32.
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* Correct concurrency bugs when running tests, along with a bugfix & small
warning cleanup.
* Committing clang-format changes
* Allow spaces (and tabs) in VOL connector info string from environment variable.
* Parse connector name from HDF5_PLUGIN_PATH environment variable better
* Correct H5VLquery_optional to use H5VL routine instead of H5I. Also add an
error message to the failure return value from not finding a plugin.
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: AWS ParallelCluster user <ec2-user@ip-10-0-0-65.us-east-2.compute.internal>
Co-authored-by: Koziol <qkoziol@88665a374c70.ant.amazon.com>
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* Correct concurrency bugs when running tests, along with a bugfix & small
warning cleanup.
* Committing clang-format changes
* Allow spaces (and tabs) in VOL connector info string from environment variable.
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: AWS ParallelCluster user <ec2-user@ip-10-0-0-65.us-east-2.compute.internal>
Co-authored-by: Koziol <qkoziol@88665a374c70.ant.amazon.com>
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* Adds missing Doxygen for H5ESpublic.h
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Fixes the broken Autotools option
* Removes the "build HL tools" option
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* Initial doxygen markup
* Committing clang-format changes
* Adds Doxygen comments to VOL flags
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Partial work towards cleaning up the onion VFD code
* Committing clang-format changes
* A few minor tweaks to the onion VFD public header
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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