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* Update API tracing info for VOL functions and regenerate trace macros for VOLQuincey Koziol2018-11-283-19/+73
| | | | API calls.
* Added 'notify' callback for async requests; switched VOL class and infoQuincey Koziol2018-11-289-82/+256
| | | | | | comparison to return comparison value as parameter, so they can return error values; "cancelled" -> "canceled"; switched order of 'wrap_object' and 'free_wrap_ctx' management callbacks.
* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-285-7/+21
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| * Merge pull request #1344 in HDFFV/hdf5 from ↵Ray Lu2018-11-273-4/+4
| |\ | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:bugfix/HDFFV-10607-patches-for-warnings-in-the-core to develop * commit '14de476c8cb1b797ad43bea3c71dfb32bcd2131c': HDFFV-10607 Fixing two compiler warnings in the library.
| | * HDFFV-10607 Fixing two compiler warnings in the library.Songyu Lu2018-11-273-4/+4
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| * | Yanked all MPI-1 callsDana Robinson2018-11-272-17/+9
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| * | Updated H5S to use the MPI-2 function MPI_Type_get_exten()Dana Robinson2018-11-271-2/+24
| |/ | | | | | | | | | | where available. OpenMPI 4.0 removed the deprecated MPI-1 MPI_type_extent() call by default, so this avoids needing a special OpenMPI build.
* | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-221-19/+26
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| * Move wait_H5init.cmake up to config/cmake.Larry Knox2018-11-201-1/+1
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| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Larry Knox2018-11-206-37/+45
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| * | Changes to CMake code to pause cmake/ctest, waiting for batch jobs toLarry Knox2018-11-201-16/+18
| | | | | | | | | | | | run and finish.
| * | Add script and changes to wait for H5Tinit.cLarry Knox2018-11-141-10/+15
| | | | | | | | | | | | | | | | | | | | | Add more sample batch scripts, specifically for sbatch, not for knl cross compile. Don't run parallel tests when no parallel test script is configured in HDF5options.cmake.
* | | Switch loc_params to VOL callbacks to pass struct by pointer instead of byQuincey Koziol2018-11-2221-437/+436
| | | | | | | | | | | | value.
* | | Add info_to_str and str_to_info "management" callbacks for serializing andQuincey Koziol2018-11-2111-53/+293
| | | | | | | | | | | | deserializing a connector's info object.
* | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-202-1/+10
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| * | Merge pull request #1335 in HDFFV/hdf5 from ↵Ray Lu2018-11-192-1/+10
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:bugfix/HDFFV-10571-cve-2018-17237-divided-by-zero to develop * commit 'c923cdad6e515c842f3795a5b6d754ad94021e09': HDFFV-10571: Minor format changes. HDFFV-10571: Minor change - reformatting the error check. HDFFV-10571: Minor change - adding the error check right after decoding of chunk dimension for safeguard. HDFFV-10571: Minor change - revised the comment to be clearer. HDFFV-10571 Divided by Zero vulnerability. Minor fix: I added an error check to make sure the chunk size is not zero.
| | * | HDFFV-10571: Minor format changes.Songyu Lu2018-11-152-2/+1
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| | * | HDFFV-10571: Minor change - reformatting the error check.Songyu Lu2018-11-151-1/+2
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| | * | HDFFV-10571: Minor change - adding the error check right after decoding of ↵Songyu Lu2018-11-152-5/+10
| | | | | | | | | | | | | | | | chunk dimension for safeguard.
| | * | HDFFV-10571: Minor change - revised the comment to be clearer.Songyu Lu2018-11-141-1/+1
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| | * | HDFFV-10571 Divided by Zero vulnerability. Minor fix: I added an error ↵Songyu Lu2018-11-141-0/+4
| | |/ | | | | | | | | | check to make sure the chunk size is not zero.
* | | Revert some of the changes to support the original property list value ofQuincey Koziol2018-11-182-4/+2
| | | | | | | | | | | | metadata read attempts.
* | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-185-36/+35
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| * | Merge pull request #1316 in HDFFV/hdf5 from ↵Ray Lu2018-11-151-12/+10
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:bugfix/HDFFV-10601-issues-with-chunk-cache-hash to develop * commit 'cd13d24e5140578a880aebe4e2d8b899179d0870': HDFFV-10601: I added error checking to the HDF5 functions. HDFFV10601: Adding performance test to verify the improvement. HDFFV-10601: I changed to a better way to calculate the number of chunks in a dataset. HDFFV-10601 Issues with chunk cache hash value calcuation:
| | * | HDFFV-10601: I changed to a better way to calculate the number of chunks in ↵Songyu Lu2018-11-081-5/+3
| | | | | | | | | | | | | | | | a dataset.
| | * | Merge branch 'develop' of ↵Songyu Lu2018-11-082-2/+6
| | |\ \ | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into bugfix/HDFFV-10601-issues-with-chunk-cache-hash
| | * | | HDFFV-10601 Issues with chunk cache hash value calcuation:Songyu Lu2018-11-021-12/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 1. H5D__chunk_hash_val: When the number of chunks in the fastest changing dimension is larger than the number of slots in the hash table, H5D__chunk_hash_val abandons the normal hash value calculation algorithm and simply uses the scaled dimension. This will cause chunks a selection that cuts across chunks in dimensions other than the fastest changing to all have the same hash value, and they will therefore always evict each other from the cache, having an obvious major performance impact. Eliminated the check for the number of slots in this function and always use the full algorithm. 2. H5D__chunk_init: When the scaled dimensions (number of chunks in each dimension) are calculated in H5D__chunk_init, a simple divide ("/") operator is used with the dataset size in elements and the chunk size in elements. While this is fine when the dataset size is an exact multiple of the chunk size, in other cases, since "/" rounds down, it results in a scaled dimension one less than it should (it ignores the partial edge chunk). This has trickle down effects on hash value calculation that can cause excess hash value collisions and therefore performance issues. Changed the calculation to (((dataset_size - 1) / chunk_size) + 1). Tested the build with Autotool and CMake.
| * | | | Renamed h5repart's -family_to_sec2 to -family_to_single.Dana Robinson2018-11-144-24/+25
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* | | | Add VOL connector info to the flie access property list returned fromQuincey Koziol2018-11-1811-263/+465
| | | | | | | | | | | | | | | | H5Fget_access_plist(). Also, other misc. cleanups, etc.
* | | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-121-5/+11
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| * | | Fix generate file commandsAllen Byrne2018-11-121-10/+9
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| * | | Fix target dependsAllen Byrne2018-11-121-2/+9
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* | | | Fix a few error messagesQuincey Koziol2018-11-121-4/+4
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* | | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-101-35/+12
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| * | | TRILAB-36 only copy shared generatedAllen Byrne2018-11-091-35/+12
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* | | Switch switch remainder of API routines to use VOL callbacks.Quincey Koziol2018-11-1024-561/+460
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* | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-071-0/+4
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| * | TRILAB-36 add custom target on generated filesAllen Byrne2018-11-061-0/+4
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* | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-061-2/+2
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| * | Snapshot version 1.11 release 3.hdftest2018-11-051-2/+2
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* | Remove most debugging shims & scaffolding.Quincey Koziol2018-11-0413-359/+141
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* | Switch driver | plugin => connector.Quincey Koziol2018-11-0430-1150/+1150
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* | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-0416-334/+98
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| * Merge pull request #1315 in HDFFV/hdf5 from ↵Ray Lu2018-10-311-2/+2
| |\ | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:bugfix/ray_test to develop * commit 'b72e926ed0c981d14d5219b32042c3d0b938d1e1': A trivial change to reformat a comment. The purpose is simply to try out Git.
| | * A trivial change to reformat a comment. The purpose is simply to try out Git.Songyu Lu2018-10-311-2/+2
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| * | Add files and changes to cross compile with CrayLinuxEnvironment and runLarry Knox2018-10-291-3/+3
| |/ | | | | | | ctest tests with a batch job on knl compute nodes.
| * Makes the installed header files the same between the autotoolsDana Robinson2018-10-2715-329/+93
| | | | | | | | | | | | | | | | | | | | | | | | and CMake. * CMake will no longer install private generated headers and tools library headers. * Several empty public header files (which represent internal packages) were removed. These were only installed by CMake. * Autotools installs will install H5FDwindows.h. Fixes HDFFV-10614.
* | Refactor, standardize, and revise the async request callbacks.Quincey Koziol2018-11-046-69/+435
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* | Refactor and standardize named datatype VOL callbacks.Quincey Koziol2018-11-015-176/+359
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* | Refactor and standardize object VOL callbacks.Quincey Koziol2018-11-0110-291/+289
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