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----------------------
./Makefile.in
Running `make distclean' will not fail if one of the
subdirectories has already been cleaned.
./config/BlankForm
./config/irix5.3
Cleaned it up more. Added better support/documentation for
systems that have more than one compiler.
./config/alpha-dec-osf4.0 [NEW]
Added a new config file as a result of testing on Jim Reus's
machine.
./test/chunk.c
Scaled down the testing range so we can actually run it
interactively.
./tools/h5import.c
Included <unistd.h> to get rid of warning for close().
./src/H5detect.c
Seg-faults on Linux for some reason when NDEBUG is defined, so
I just undef it at the top of the source.
./test/big.c
Added a fflush().
./tools/h5ls.c
The `-d' flag now works even when `-v' isn't specified.
./examples/h5_chunk_read.c
./examples/h5_compound.c
./examples/h5_extend_write.c
./examples/h5_group.c
./examples/h5_read.c
./examples/h5_write.c
Indented according to hdf5 standards.
Fixed compiler warnings
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----------------------
./RELEASE
Updated with important changes I made since the second beta.
./src/H5A.c
./src/H5D.c
./src/H5Dprivate.h
./src/H5G.c
./src/H5Gprivate.h
./src/H5R.c
./src/H5Rprivate.h
./src/H5T.c
./src/H5Tprivate.h
Any API function that used to take an `hid_t loc_id' followed
by a `const char *name' can now take any type of object for
the loc_id as long as the object is somehow associated with a
file. Internally, H5G_loc() was modified to return an
H5G_entry_t* instead of an H5G_t* so it's more general.
Among other things, this allows one to retrieve information
about an object like a named type or dataset without knowing
the name of the type or dataset:
int
get_nlinks (hid_t obj)
{
H5G_stat_t sb;
if (H5Gstat(obj, ".", TRUE, &sb)<0) return -1;
return sb.nlink;
}
./test/gheap.c
./test/istore.c
These files needed a couple of changes because they call some
of the internal functions whose H5G_t arguments changed to
H5G_entry_t.
./src/H5A.c
Got rid of all the switch statements for getting symbol table
entries for varous objects and replaced them with a call to
H5G_loc() allowing attributes to automatically apply to any
type of object that belongs to a file.
./test/Makefile.in
Moved the ragged array tests from the normal list of tests to
the `make timings' target.
./test/ragged.c
Added rewrite tests -- rewrite the rows of a dataset changing
the number of rows and the length of each row.
./test/mtime.c
Added a test that checks that H5Gstat() can be called with a
dataset as the first argument.
./src/H5S.c
Added #ifdef HAVE_PARALLEL around code to check for the
HDF5_MPI_OPT_TYPES environment variable because the global
variable that gets set is #ifdef'd.
./bin/release
bzip2 uses .bz2 as the file extension.
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so only proc 0 writes it to disk. The elimination is activated
only when the environment variable HDF5_MPI_1_METAWRITE is nonzero;
otherwise all processes that opened the file will write the metadata to disk.
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unless the environment variable HDF5_MPI_OPT_TYPES is nonzero.
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----------------------
./src/H5G.c
Fixed a link count on groups. Groups were always created with
a link count of zero instead of one.
./src/H5Gpublic.h
Added H5G_NTYPES so applications can easily declare arrays
which are indexed by object type.
./src/H5O.c
Calling `H5O_link(&ent,0)' will succeed when the file is open
for read only because it's the only way to get the object's
current link count.
./tools/h5ls.c
Can take non-group object names on the command line (and
multiple objects). Reorganized to be more extendible. The
link count is displayed for `-v'.
./src/H5F.c
Dumping of cache statistics is controlled by only the
HDF5_DEBUG environment variable and not the H5F_ACC_DEBUG flag
for H5Fopen() and H5Fcreate() since this makes it similar to
the other debugging options.
./src/H5R.c
./test/ragged.c
./test/Makefile.in
Tests pass but still a little work left to be done.
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(may coalesce contiguous blocks of outer dims, but won't collapse inner dims).
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hyperslab types
until I can test and debug them more fully.
Transfers using MPI buf and file types are correct, but this version
doesn't attempt to optimize the types by coalescing contiguous blocks.
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in condition.
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----------------------
./MANIFEST
./src/H5R.c [NEW]
./src/H5Rprivate.h [NEW]
./src/H5Rpublic.h [NEW]
./src/Makefile.in
./src/hdf5.h
./test/ragged.c [NEW]
Preliminary support for 2d ragged arrays for Mark Miller and
Jim Reus. Not fully implemented yet. The test is not actually
part of `make test' because we still have some memory problems.
./src/H5E.c
./src/H5Epublic.h
Added H5E_RAGGED as a major error number.
./bin/release
Checks the MANIFEST file against `svf ls' on systems that have
it.
./bin/trace
Fixed a bug that caused arguments of type `void *x[]' to not
be handled.
./src/H5.c
Removed unused variables and changed a couple types to
fix compiler warnings.
Added tracing support for ragged array object ID's and arrays
of pointers.
./src/H5D.c
H5Dcreate() will complain if either of the property lists are
invalid (instead of using the default).
./src/H5D.c
./src/H5Dprivate.h
Split H5Dget_space() into an API and internal function so it
can be called from the new ragged array layer.
./src/H5Fistore.c
Fixed warnings about unsigned vs. signed comparisons.
./src/H5Flow.c
Fixed a warning about a variable being shadowed in the MPI-IO
stuff.
./src/H5Iprivate.h
./src/H5Ipublic.h
Added the H5_RAGGED atom group.
./src/H5Shyper.c
Fixed some freeing-free-memory errors that resulted when
certain arrays were freed but the pointers were left in the
data structures. I simply set the pointers to null after they
were freed.
./src/H5Sprivate.h
./src/H5Sselect.c
Split the H5Sselect_hyperslab() function into an API and a
private function so it could be called from the ragged array
layer.
Added H5S_SEL_ERROR and H5S_SEL_N to the switch statements to
get rid or compiler warnings.
./src/H5Tconv.c
Removed a misleading comment.
./test/bittests.c
Fixed a warning about a printf().
./test/cmpd_dset.c
Fixed warnings about unused variables because of test #11
being commented out.
./bin/trace
Shortened the right margin for the output to allow room for
the `);' at the end of the TRACE() macros.
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and changed error return of H5S_mpio_spaces_xfer to simple FAIL
in case file layout is not contiguous (so that the xfer will still be
done, but in the old chunk-by-chunk method).
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Fixed errors
H5.c
Fixed core dump with setvbuf() for debugging.
H5Fistore.c
Fixed bug with sparse datasets.
H5Omtime.c
Found a typo in "Posix Programmer's Guide". The `%z' in the
strftime() should be `%Z' instead.
H5T.c
H5Tpublic.h
Improved api tracing for H5Tinsert_array().
h5tools.c
Doesn't dump core for empty datasets.
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conditionally included at compile time. Tracing and debugging share
the same environment variable. All is documented in Debugging.html.
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is compiled only in parallel version but an "empty"
source in the serial version.
Tested in solaris 2.5.
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----------------------
./src/H5.c
Fixed an argument promotion bug in HDfprintf()
./src/H5Fistore.c
Fixed a array bounds read error.
./src/H5HG.c
Fixed uninitialized (but unused) data appearing in the hdf5
file, a potential security problem.
./src/H5T.c
./src/H5Tpublic.h
Added new data types for hdf5 types: H5T_NATIVE_HSIZE,
H5T_NATIVE_HSSIZE, H5T_NATIVE_HERR, and H5T_NATIVE_HBOOL. I
did not add H5T_NATIVE_HID since I couldn't think of a reason
that it would be stored in a file anyway.
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----------------------
./src/H5Fistore.c
Fixed a bug that caused the wrong number of chunk offsets to
be read or written from the file.
./src/H5Z.c
Fixed a memory bug.
./test/dtypes.c
Removed redundant tests.
./bin/snapshot
Removed Perl code from a shell script. Oops :-)
./src/H5D.c
Removed cvs merge conflicts.
./src/H5Omtime.c
Fixed a typo in the Irix5.3 code.
./src/H5S.c
Fixed a memory leak.
./src/H5Shyper.c
Fixed a bad call to malloc() that didn't allocate enough
memory. Reordered a comparison to eliminate an array bounds
read error.
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----------------------
./src/H5G.c
./src/H5Gpublic.h
./test/links.c
Fixed a bug in H5Gstat() that caused the wrong information to
be returned sometimes. Added check for named data types.
./test/extend.c
./test/links.c
./test/mtime.c
Added `all tests passed' messages.
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----------------------
./MANIFEST
./src/H5Ssimp.c [REMOVED]
./src/Makefile.in
Removed H5Ssimp.c since it was no longer used.
./bin/snapshot
Fixed a few minor things to make it work better.
./src/H5D.c
Cleaned up H5D_read() and H5D_write() by combining some code
in each. Added timing calls around the data space calls when
H5S_DEBUG is defined.
./src/H5S.c
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Spoint.c
./src/H5Sprivate.h
Changed H5S_find() so it returns a table entry again instead
of copying the data into a caller-supplied buffer. This
allows the timers to be stored in the table and updated by the
caller. Added H5S_register() to register new table entries
and added entry creation to all the H5S selection
methods. Also changed lots of global functions to static
functions.
./src/H5Fistore.c
Fixed a memory bug in the raw data cache.
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a typo, causing the debugging to try dump H5Z_table beyond what
is being used. Changed "<=" to "<".
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----------------------
./doc/html/Datatypes.html
./doc/html/H5.format.html
./src/H5.c
./src/H5Odtype.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tpublic.h
./test/dtypes.c
Changed the values of the H5T_str_t type in order to make a
distinction between C's null terminated strings and strings
which are not null terminated.
The string character set and padding method are saved to the
hdf5 file instead of using defaults.
Added conversion function from one fixed-length string type
to another.
./test/chunk.c
Fixed to work with new filter API
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----------------------
./config/solaris2.5
Hopefully set up now so it honors the CC and CFLAGS variables
and understands solaris cc flags.
./test/big.c
Checks to see if creating lots of large sparse files exceeds
the user disk quota and skips the test. It also checks that
we can actually open ~64 files at once.
./doc/html/Files.html
./src/H5A.c
./src/H5Aprivate.h
./src/H5F.c
./src/H5Fpublic.h
Added the H5Fflush() function which takes any object as an
argument as long as the object is in some way associated with
a file. This required an H5A_entof()
./src/H5.c
./src/H5Flow.c
The `%a' format of HDfprintf() now allows a field width and
justification flag etc, like the other formats. The old
H5F_addr_print() was recoded to call HDfprintf() instead of
vice versa.
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----------------------
./MANIFEST
Replaced Compression.html with Filters.html
./doc/html/Filters.html
./src/H5Ocomp.c
./src/H5P.c
./src/H5Ppublic.h
./src/H5Z.c
./src/H5Zprivate.h
Added two extra arguments to H5Pget_filter() in order to
retrieve the filter name. The name is the name registered for
the filter with H5Zregister(), but if the dataset creation
property originally came from an existing file then the name
is that which is stored in the file.
./tools/h5ls.c
The `-v' option now prints the names of the filters.
./src/H5B.c
./src/H5Fistore.c
./src/H5O.c
./src/H5Oefl.c
./src/H5Oprivate.h
./src/H5P.c
Plugged a memory leak.
./src/H5MMprivate.h
H5MM_malloc(0) and H5MM_calloc(0) actually allocate a single
byte in order to be sure that we get a valid pointer.
./src/H5S.c
./src/H5Sselect.c
Fixed pointer->integer conversions in error return values in
three places.
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