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* [svn-r13028] Description:Quincey Koziol2006-12-0636-364/+2238
| | | | | | | | | | | | | | | | | Add first pass of "dense" attribute storage to objects. Lots of parts of this are stubbed out, but all the tests are passing and I'll work on the corner cases soon. Eliminated several unused parameters from object header message callback routines. Other, miscellaneous code cleanups, etc. (and probably some things I've forgotten about... :-) Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r13022] Description:Quincey Koziol2006-12-041-5/+13
| | | | | | | | Fix error where message type was being cleared before it was checked. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13021] Cleaned up some mismatched types that were causing errors on ↵James Laird2006-12-043-4/+4
| | | | | | | | copper in 64-bit mode. Tested on copper.
* [svn-r13020] Description:Quincey Koziol2006-12-045-27/+37
| | | | | | | | Make number of attributes tracking in object header prefix "live" Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13019] Description:Quincey Koziol2006-12-045-226/+96
| | | | | | | | | | | Further simplifications and cleanups to object header message code. Also, some changes to the "iterate" routines, in order to not override the return value from the iterator callback routine. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13016] Description:Quincey Koziol2006-12-0430-1551/+1427
| | | | | | | | | | | Finish moving object header message routines into their own source code module, along with renaming them to have "H5O_msg_" prefix... Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r13015] Description:Quincey Koziol2006-12-0442-1213/+1297
| | | | | | | | | | | Migrate more object header routines to use the H5O_msg_ prefix and put them into the src/H5Omessage.c code module. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r13012] Description:Quincey Koziol2006-12-0315-200/+237
| | | | | | | | | | | | | | Refactor object header code to separate process of creating an object header message from the process of writing to an existing one. Start renaming operations that deal with object header messages to have "H5O_msg_" prefix... Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r13011] Remove some // comments that were making pgcc unhappy.James Laird2006-12-021-2/+0
| | | | Tested on heping; no significant changes.
* [svn-r13010] Cleaned up warnings in H5SM* files.James Laird2006-12-023-24/+26
| | | | Cleaned up all warnings on kagiso. Tested on kagiso and copper.
* [svn-r13006] Added checksumming to shared message metadata.James Laird2006-12-012-13/+50
| | | | Tested on kagiso, currently testing elsewhere.
* [svn-r13004] Much improved shared object header message test, along with ↵James Laird2006-12-0111-102/+121
| | | | | | | | | | | some bug fixes to make the test pass. These changes involve changes to the file format of SOHMs, but that's okay because nobody should have been using SOHMs yet anyway. Tested on Windows, kagiso, copper, and heping
* [svn-r13002] Description:Quincey Koziol2006-11-3018-288/+405
| | | | | | | | | | | | Fix problem with copying objects when the dataset to copy has an "older" version of the layout message and needs to compute the size of the dataset's storage after the dataspace information is available. Minor random cleanups also... Tested on: FreeBSD/32 4.11 (sleipnir) Too minor/weird to test w/h5committest...
* [svn-r13001] Enabled CORE file driver to read or write an existing file ↵Raymond Lu2006-11-301-9/+54
| | | | | | | depending the setting of backing store through H5Pset_core_fapl and file open flag. Added test cases in vfd.c.
* [svn-r12997] Description:Quincey Koziol2006-11-298-57/+57
| | | | | | | | | | Rename too generic "H5O_FLAG_<foo>" flags that are used as flags for header messages to "H5O_MSG_FLAG_<foo>", in order to make their use clearer. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir)
* [svn-r12995] Description:Quincey Koziol2006-11-292-8/+4
| | | | | | | | | | | | Make the memory size of the max. compact & min. dense attribute storage variables align with the property list size, instead of the size on disk, to better handle big-endian machines. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12994] Description:Quincey Koziol2006-11-2920-153/+574
| | | | | | | | | | | | | | | Propagate object creation properties up into group, dataset and named datatype property lists, when those property lists are retrieved for existing objects in a file. Also, add H5Tget_create_plist() API routine, to allow named datatype property lists to be retrieved for named datatypes. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12992] Description:Quincey Koziol2006-11-286-20/+125
| | | | | | | | | | | | | | | | | | Add fields for tracking attributes on objects to object header prefix, when using the latest version of the format. Reduce size used to store type of header message from 2 bytes to 1. (If we have >256 message types, we probably have a different problem... :-) Also, add "birth" time for object (i.e. creation time) [named to align with similar fields in file systems] Correct bug in H5Gget_objinfo() - retrieve the ctime field from object info, instead of the mtime field. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12991] Description:Quincey Koziol2006-11-284-20/+34
| | | | | | | | | Reduce the size of some of the group information to more reasonable bounds. (16-bit values instead of 32-bit values). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12990] Description:Quincey Koziol2006-11-286-45/+132
| | | | | | | | | | | When using the latest version of the file format, move the "modification time" information into the object header prefix, which is more efficient. Also add "access time" and "change time" (for metadata) fields, all of which take about the same space as the previous modification time header message. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12989] Description:Quincey Koziol2006-11-281-2/+0
| | | | | | | | Remove incorrect sanity check & add test case that triggered it. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12988] Description:Quincey Koziol2006-11-278-20/+35
| | | | | | | | | General cleanups, in preparation for adding some attribute-tracking fields to the object header prefix. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12987] Description:Quincey Koziol2006-11-276-10/+10
| | | | | | | | | Clear up some confusion for the internal H5V_log2_gen() routine, so it always takes a 64-bit value as a parameter. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12983] Description:Quincey Koziol2006-11-272-94/+38
| | | | | | | | | Merge H5Pget/set_create_tracking / H5Pget/set_create_index routines into H5Pget/set_creation_order. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12977] Description:Quincey Koziol2006-11-277-123/+288
| | | | | | | | Added H5Gget_info[_by_idx] routines and deprecated H5Gget_num_objs routine. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12976] Description:Quincey Koziol2006-11-278-121/+268
| | | | | | | | | | | Add # of attributes to the object info struct and deprecate H5Aget_num_attrs(). Tested on: FreeBSd/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12975] Description:Quincey Koziol2006-11-275-53/+54
| | | | | | | Cosmetic changes from running bin/reconfigure... Tested on: None - very minor..
* [svn-r12974] Description:Quincey Koziol2006-11-272-1/+72
| | | | | | | | | | | Add H5Oget_info() and H5Oget_info_by_idx() API routines & tests Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) Mac OS X/32 10.4.8 (amazon) AIX/32 5.? (copper)
* [svn-r12973] Description:Quincey Koziol2006-11-2517-502/+605
| | | | | | | | | | | | | | | Finish removing library's internal code that uses H5G_get_objinfo() and retarget it at either getting the link information or the object information, as appropriate. (Still need to add user-level tests for H5Oget_info(), but since several internal components of the library depend on the internal version, it appears to be working correctly). Tested on: FreeBSD/32 4.11 (sleipnir) Linux/322.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper) Mac OS X/32 10.4.8 (amazon)
* [svn-r12972] Description:Quincey Koziol2006-11-222-17/+21
| | | | | | | | Move the definition of the typedef for uint64_t from H5private.h to H5public.h (to fix Windows builds) Tested on: None - just eyeballed.
* [svn-r12971] Description:Quincey Koziol2006-11-221-1/+1
| | | | | | | Remove extra comma in enum that caused failure on AIX. Tested on: None - just eyeballed - very trivial
* [svn-r12963] Description:Quincey Koziol2006-11-2117-83/+298
| | | | | | | | | | Refactor internal code that retrieves the object's type to use the new H5O_type_t (which only definitions for object types, instead of links as well) instead of the older H5G_obj_t (which included links, etc.) Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12959] Description:Quincey Koziol2006-11-211-5/+34
| | | | | | | | Add struct definition for H5O_info_t, for review by others. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12958] Description:Quincey Koziol2006-11-211-3/+0
| | | | | | | Remove redundant memset for calloc'ed buffer. Tested on: Linux/32 2.6 (chicago)
* [svn-r12957] Clean up some purify warnings in the code by making sure thatJames Laird2006-11-213-1/+9
| | | | | | memory is always initialized. Tested on heping, kagiso, and juniper.
* [svn-r12955] Description:Quincey Koziol2006-11-214-7/+28
| | | | | | | | Finish implementing H5Oopen_by_idx() (still needs tests) Tested on: Linux/32 2.4 (chicago) Linux/64 2.4 (chicago2)
* [svn-r12954] Description:Quincey Koziol2006-11-218-104/+418
| | | | | | | | Initial refactoring to prepare for H5Oopen_by_idx() API support. Tested on: Linux/32 2.4 (chicago) Linux/64 2.4 (chicago2)
* [svn-r12952] Description:Quincey Koziol2006-11-205-7/+28
| | | | | | | | | | Add tests for H5Literate(), in all combinations. Sweep up a few minor issues with H5Literate() that the tests exposed. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12951] Fixed error on copper in 64-bit. Was using size_t when I ↵James Laird2006-11-201-2/+2
| | | | | | | | | should have been using unsigned. Tested on copper; minor change. Currently testing on juniper.
* [svn-r12949] Description:Quincey Koziol2006-11-2026-480/+589
| | | | | | | | | | | | | | | | Finish implementation of H5Literate() [still needs real tests] Clean up datatype macro warnings a bit more. Unify iterator callback macros and put up in public header file, with the iterator directions. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12942] Description:Quincey Koziol2006-11-181-8/+19
| | | | | | | | | | | Fix H5Rget_name() routine with dataset region references and merge tests into getname test. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12941] Description:Quincey Koziol2006-11-172-1/+2
| | | | | | | | | | Clean up warnings assigned to me from today's meeting - still need to tackle the datatype conversion ones... Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir)
* [svn-r12940] Description:Quincey Koziol2006-11-178-100/+177
| | | | | | | Add some more types to tracing script and regenerate TRACE macros, etc. Tested on: Linux/32 2.4 (heping)
* [svn-r12938] Description:Quincey Koziol2006-11-178-1781/+1937
| | | | | | | | | | | | | | | | | Add src/H5Oalloc.c file forgotten in previous object header checkin Break out more object header routines into separate file (debugging routines this time). Fix "//" style comment in recent ISOHM source changes. Fix 'size_t' vs. 'unsigned' problem (visible in 64-bit testing) in recent ISOHM test changes. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir)
* [svn-r12937] Deleted H5SMpublic.h file, since information in it has been ↵James Laird2006-11-173-28/+2
| | | | | | | | | | moved to H5Opublic.h. Updated Makefile.am, reconfigured. Tested on kagiso.
* [svn-r12935] Added list-to-btree conversion, changed SOHM apis, and pushed ↵James Laird2006-11-1719-285/+491
| | | | | | | | | | | SOHM table version and size information into the superblock to eliminate a read when loading it. This is a file format change, and hopefully the last one (knock on wood). Tested on kagiso and Windows (mostly just a SOHM change).
* [svn-r12933] Description:Quincey Koziol2006-11-175-669/+608
| | | | | | | | | | | Finish migrating "object copy" supporting routines into src/H5Ocopy. Clean up a few minor errors _en passant_ Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir)
* [svn-r12932] Description:Quincey Koziol2006-11-1716-230/+450
| | | | | | | | | | | | Basic support for H5Literate() routine. Still needs to be fleshed out and refactored to simplify. Also, needs tests. :-) Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper) Mac OS X/32 10.4.8 (amazon)
* [svn-r12931] H5L_link is called inside H5O.c but the header file that ↵MuQun Yang2006-11-171-0/+1
| | | | | | | | | | | | | | | | | | declared this function is not included in this file. Windows compiler issued a bad warning that"H5L_link" is not defined but is called. So add header file "H5Lprivate.h" in H5O.c. Hopefully this is the right way. Tested on windows and tested the compiling on Linux. H5L_link is called inside H5O.c but the header file that declared this function is not included in this file. Windows compiler issued a bad warning that"H5L_link" is not defined but is called. So add header file "H5Lprivate.h" in H5O.c. Hopefully this is the right way. Tested on windows and tested the compiling on Linux. H5L_link is called inside H5O.c but the header file that declared this function is not included in this file. Windows compiler issued a bad warning that"H5L_link" is not defined but is called. So add header file "H5Lprivate.h" in H5O.c. Hopefully this is the right way. Tested on windows and tested the compiling on Linux.
* [svn-r12929] Hopefully this really is a fix for the tg-login errors.James Laird2006-11-165-56/+54
| | | | | | | | | | | The version of libtool used by HDF5 isn't directly affected by the reconfigure script; instead, libtoolize --force must be used by hand. Libtool was the source of the problem, so rolling its version back to 1.5.14 should solve the issue (at least temporarily). Reconfigure should still work on both heping and kagiso. Tested on heping, kagiso, and tg-login3.
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