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* [svn-r17345] Purpose:Mike McGreevy2009-08-122-66/+136
| | | | | | | | | | | | | | | | | | | | | | | | Updating autotools Description: Installed new autotools and used them to reconfigure HDF5. - Automake upgraded to 1.11 - Autoconf upgraded to 2.64 - bin/reconfigure script edited to use new versions (on jam), and run to generate new configure script and Makefile.in's. - configure.in script edited to add "_cv_" to all AC_CACHE_VAL strings (in order to comply with new autoconf standard). Tested: Tested on machines jam, smirom, liberty, linew. Tested w/ features c++, fortran, parallel. Tested w/ compilers gcc, pgcc, icc. Further testing via Daily Tests should catch any other outliers. Upon passing DT's, I'll propogate the new tools into 1.8, hdf4, et cetera.
* [svn-r17343] Snapshot version 1.9 release 44Larry Knox2009-08-122-11/+11
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* [svn-r17341] Description:Quincey Koziol2009-08-126-106/+8
| | | | | | | Tweaks to comments, to better align with changes on sblock_mdc branch Tested on: Just eyeballed, only tweaks to comments
* [svn-r17336] Description:Quincey Koziol2009-08-126-73/+102
| | | | | | | | | | | | | | | | | | | | | Bring more changes from the file_free_space branch into the trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17331] Description:Quincey Koziol2009-08-114-28/+98
| | | | | | | | | | | | | | | | | | | | | Bring back more changes from file free space branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17324] Description:Quincey Koziol2009-08-114-58/+183
| | | | | | | | | | | | | | | | | | | | | Bring more improvements/changes back from file_free_space branch Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17319] Description:Quincey Koziol2009-08-117-109/+273
| | | | | | | | | | | | | | | | | | | | | | Bring more superblock manipulation & aggregator changes from file free space branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17313] Description:Quincey Koziol2009-08-1038-180/+187
| | | | | | | | | | | | | | | | | | | | | Bring back various minor code cleanups from the file free space branch Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17302] Description:Quincey Koziol2009-08-041-6/+4
| | | | | | | | | Correct errors on machines (like Windows) that don't have C99 named initializer support. Tested on: Mac OS X/32 10.5.7 (duty) Windows build (by Allen)
* [svn-r17284] Description:Quincey Koziol2009-07-313-14/+7
| | | | | | | | | | | | | | | | | | | | | | Remove unneccessary dest. layout information from chunked dataset copying routine. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17281] Description:Quincey Koziol2009-07-3114-110/+122
| | | | | | | | | | | | | | | | | | | | | | Further refactoring of the dataset layout information, to separate the storage information from the layout info. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17276] Description:Quincey Koziol2009-07-303-222/+244
| | | | | | | | Clean up compiler warnings Tested on: Mac OS X/32 10.5.7 (amazon) Too minor to require h5committest
* [svn-r17275] Description:Quincey Koziol2009-07-3014-331/+371
| | | | | | | | | | | | | | | | | | | | | | | Refactor dataet storage information further, moving the chunk operations into the storage struct and also fine-tune the chunk index structure for index callbacks. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17272] Description:Quincey Koziol2009-07-308-30/+25
| | | | | | | | | Finish pushing contiguous storage size from 'layout' into 'storage" data structure. Tested on: FreeBSD/32 6.3 (duty) w/debug Too minor to require h5committest
* [svn-r17269] Description:Quincey Koziol2009-07-305-72/+71
| | | | | | | | | Refactor how serialized size of layout message is computed, slightly. Tested on: Mac OS X/32 10.5.7 (amazon) debug & production FreeBSD/32 6.3 (duty) debug Too minor to require h5committest
* [svn-r17268] Description:Quincey Koziol2009-07-3013-27/+32
| | | | | | | | | | | Bring r17266 from 1.8 branch to trunk: Clean up various compiler warnings from IRIX64 build Tested on: Mac OS X/32 (amazon) debug & production (yes, I know it's not an IRIX64 system :-) Too minor to require h5committest
* [svn-r17264] Description:Quincey Koziol2009-07-294-30/+23
| | | | | | | | | | Refine how we store the chunk index address in the layout storage structure. Tested on: FreeBSD/32 6.3 (duty) debug Mac OS X/32 10.5.7 (amazon) debug & production Too minor to require h5committest
* [svn-r17261] Description:Quincey Koziol2009-07-298-127/+157
| | | | | | | | | | | | | | | | | | | | | | Refactoring dataset layout information to segregate the constant items from the variable items (at least from a storage standpoint). Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17243] Description:Quincey Koziol2009-07-279-327/+607
| | | | | | | | | | | | | | | | | | | | | | Refactor how the layout message is created/written/read in the dataset's object header. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17230] Description:Quincey Koziol2009-07-237-53/+74
| | | | | | | | | | | | | | | | | | | | | Various minor tuneups noticed in working on the revise_chunks branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17207] Fixed a small bug in the fractal heap code involving filtered ↵Neil Fortner2009-07-211-1/+1
| | | | | | fractal heaps. Tested: jam, linew, smirom (h5committest)
* [svn-r17187] The ret_value is a (H5A_t *) but FAIL was used. This typo ↵Albert Cheng2009-07-151-1/+1
| | | | | | | | | | | | caused a warning from Linux gcc but resulted in error by AIX xlc compiler. Solution: Changed FAIL to NULL. Tested: Just compiling in the AIX system.
* [svn-r17182] In my last round of checkin (r17177), I forgot to clean up some ↵Raymond Lu2009-07-142-6/+1
| | | | | | | | | code. I'm checking in the fix now. Another minor fix - The way that H5Tset_size checks whether the datatype is a string wasn't correct. I changed it to use the macro H5T_IS_STRING. Tested on jam, smirom, and linew.
* [svn-r17177] In H5Odtype.c, the decoding function used to mark the datatype ↵Raymond Lu2009-07-139-9/+58
| | | | | | | | | | as on disk (see bug #1585). I changed it to undefined and let the caller functions decide the location of the datatype. For H5Tdecode, it should mark the datatype as in memory. For other callers like H5Dopen or H5Aopen, they should makr it as on disk. Tested it on jam, smirom, linew.
* [svn-r17159] Snapshot version 1.9 release 43Larry Knox2009-07-062-3/+3
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* [svn-r17155] Description:Quincey Koziol2009-07-0322-102/+4410
| | | | | | | | | | | | | | | | | | | | | | | Bring r17154 from 'revise_chunks' branch to trunk: Add fixed array data structure. (For initial use as a chunk index) Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17152] Description:Quincey Koziol2009-07-032-2/+3
| | | | | | | | | Clean up some minor formatting and misc. errors noticed while working on fixed array code merge. Tested on: Mac OS X/32 10.5.7 (amazon) Too minor to require h5committest
* [svn-r17149] Description:Quincey Koziol2009-07-022-19/+2
| | | | | | | | | | | | | | | | | | | | | | Fix a couple of problems with r17148 checkin that were found by pickier compilers. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17148] Description:Quincey Koziol2009-07-029-71/+192
| | | | | | | | | | | | | | | | | | | | | | Refactor how chunked dataset information is computed, moving it earlier and avoiding more recomputation. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17146] Description:Quincey Koziol2009-07-0214-189/+300
| | | | | | | | | | | | | | | | | | | | | | Bring a bunch of misc. improvements & tweaks from the revise_chunks branch back to the trunk, so that future merges won't be so painful. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17140] Description:Quincey Koziol2009-07-024-313/+319
| | | | | | | | | | | | | | | | | | | | | | Migrate "new style" func enter macros (BEGIN_FUNC/THROW/CATCH/END_FUNC) into common header files, so that other packages can use them. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17138] Description:Quincey Koziol2009-07-016-11/+75
| | | | | | | | | | | | | | | | | | | | | | | Disable use of temporary file space allocation when using a parallel VFD, until we've made changes to broadcast the new address of the metadata when it is relocated down into 'normal' file space. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17135] Snapshot version 1.9 release 42Larry Knox2009-07-012-3/+3
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* [svn-r17119] Bug fix #1513. Reading an empty attribute caused seg fault. ↵Raymond Lu2009-06-264-23/+1
| | | | | | | | | | | | The flag "initialized" in the attribute structure wan't set correctly. It caused some confusion in H5A_read. This flag was actually redundant because the library can alwasy check if the data buffer is present. To fix it, I removed the "initialized" flag in the attribute structure and let H5A_read check the data buffer. Tested on jam, smirom, and linex.
* [svn-r17108] Purpose: Fix bug in H5Z_filter_infoNeil Fortner2009-06-251-1/+1
| | | | | | | | | | | Description: Previously, when H5Z_filter_info was called for a filter that was not present, it would succeed and return the information from one position past the end of the pipeline, possibly causing a segfault. This affected at least H5Pget_fitler_by_id1/2, and possibly other API functions. Fixed to properly return failure. Tested: jam, linew, smirom (h5committest)
* [svn-r17062] Description:Quincey Koziol2009-06-171-14/+14
| | | | | | | | | Correct error in calculation of the new metadata accumulator size when block to write overlaps beginning of accumulator. Tested on: FreeBSD/32 6.3 (duty) Mac OS X/32 10.5.7 (amazon)
* [svn-r17047] Snapshot version 1.9 release 41Larry Knox2009-06-142-3/+3
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* [svn-r17045] Description:Quincey Koziol2009-06-121-56/+150
| | | | | | | | | | | | | | | | | | | | | | | | | Update the metadata accumulator code: - Fix a bug where we were adding 2, instead of multiplying by 2 :-/ - Put an upper limit on the size of the metadata accumulator - Allocate the accumulator in powers of 2, instead of random sizes - Roll out the writes from the accumulator in a more I/O friendly way Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17039] Description:Quincey Koziol2009-06-112-19/+82
| | | | | | | | | | | | | | | | | | | | | | | Convert indirect fractal heap blocks to use deferred file space allocation (by using the temporary file space feature), which should ease up the metadata fragmentation that can occur when lots of objects are added to a fractal heap (like adding many links to a group). Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
* [svn-r17038] Description:Quincey Koziol2009-06-112-34/+113
| | | | | | | | | | | | | | | | | | | | | | | Switch fractal heap direct blocks to use temporary file space, until they are flushed, which makes allocation of space in file more efficient, particularly for heaps with I/O filters. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17035] Description:Quincey Koziol2009-06-112-0/+32
| | | | | | | | | Add private macro for testing if an address is in the 'temporary' file space for a file. Tested on: FreeBSD/32 6.3 (duty) Too minor to require h5committest
* [svn-r17032] Added H5_DLL tag to gettimeofday signature for WindowsAllen Byrne2009-06-111-1/+1
| | | | Tested: XP32
* [svn-r17031] Description:Quincey Koziol2009-06-111-0/+4
| | | | | | | | | | | Correct latent bug in one file space allocation test which was not getting a new file pointer when reopening a file. Also, add a couple more asserts to the file space allocation code in the library to help detect this problem earlier. Tested on: Linux/32 2.6 (jam) w/core VFD
* [svn-r17029] Description:Quincey Koziol2009-06-113-1/+35
| | | | | | | | | | | | Adjust 'temporary' file space code to always be within the file's address space, even when the file uses 32-bit addresses. (It's not really necessary to be within the file's address space, since objects with temporary addresses can't be written to the file, but it can't really hurt and it makes the testing easier) Tested on: Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode and with 'make check-vfd'
* [svn-r17025] Purpose: fix bug 1593Neil Fortner2009-06-101-98/+102
| | | | | | | | | | | | Description: When using H5T_copy on committed datatypes that are already open, H5T_copy would properly use the already existing shared struct, but would still deep copy all of the fields in that struct. This would cause memory leaks, and in the case of a compound containing a vlen (or reference), the change in size would cause the size of the resulting type to be set to an incorrect value. Changed H5T_copy to properly avoid deep copies when using a reopened shared struct. Tested: jam, linew, smirom (h5committest), purify on jam
* [svn-r17021] Description:Quincey Koziol2009-06-093-7/+33
| | | | | | | | | | | | | | | | | | | | | | Make error handling for detecting overlaps between 'normal' and 'temporary' space allocation more robust. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17017] Description:Quincey Koziol2009-06-087-36/+80
| | | | | | | | | | | | | | | | | | | | | | | Rework the "proxy address" code to be more general and implement a better "temporary address" feature, that will allow for metadata allocations to be deferred to when the metadata is actually flushed to the file. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17012] Snapshot version 1.9 release 40Larry Knox2009-06-072-3/+3
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* [svn-r17010] Description:Quincey Koziol2009-06-044-0/+34
| | | | | | | | | | Bring file addres proxy additions from r16985 on the revise_chunks branch back into the trunk, for use in allowing fractal heap direct blocks to defer their allocation in the file. Tested on: Mac OS X/32 10.5.7 (amazon) debug & production too minor to require h5committest
* [svn-r17006] Description:Quincey Koziol2009-06-041-4/+8
| | | | | | | | | | | Bring r17005 from revise_chunks branch to trunk: Correct error in unpinning an entry from outside the cache to correctly unpin the entry only when it is not being used for a flush dependency relation. Tested on: FreeBSD/32 6.3 (duty) h5committested on branch
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