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* Update MANIFEST.vchoi2020-07-161-0/+1
| | | | Add new test to Cmake.
* Add new source files to CMake buildQuincey Koziol2020-06-281-0/+1
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* Merge branch 'develop' of ↵Jacob Smith2020-04-071-4/+34
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into feature/vfd_splitter_mirror_a
| * Minor updates and fix settings for fortran flagsAllen Byrne2020-04-061-1/+0
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| * TRILAB-192 add c++ and fortran warnings build systems one fileAllen Byrne2020-04-051-3/+15
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| * Fix threadsafe for new testAllen Byrne2020-03-181-1/+20
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* | Add Splitter VFD to library.Jacob Smith2020-03-131-0/+19
|/ | | | | | | | | | | | | | | * "Simultaneous and equivalent" Read-Write and Write-Only channels for file I/O. * Only supports drivers with the H5FD_FEAT_DEFAULT_VFD_COMPATIBLE flag for now, preventing issues with multi-file drivers. Add Mirror VFD to library. * Write-only operations over a network. * Uses TCP/IP sockets. * Server and auxiliary server-shutdown programs provided in a new directory, `utils/mirror_vfd`. * Automated testing via loopback ("remote" of localhost).
* TRILAB-142 Change minimum CMake version to 3.12Allen Byrne2020-02-211-1/+1
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* Add thread_id.c to the MANIFEST and the CMakeLists.txt per Allen'sDavid Young2020-02-031-0/+1
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* HDFFV-11001 Add fine control over testingAllen Byrne2020-01-151-1/+3
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* Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings ↵David Young2019-11-271-2/+0
| | | | level and fixing some code.' (commit 5c911d8baf3)"
* Add new source files to CMakeLists.txt.David Young2019-11-201-0/+2
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* Add new H5R API that abstracts object, region and attribute reference typesJerome Soumagne2019-10-081-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Also support references to external files Add new H5T_REF type and type conversion routines Support conversion from H5T_REF_OBJ/DSET_REG to H5T_REF Add H5Treclaim() API to reclaim memory of vlen/reference types Deprecate H5Dvlen_reclaim() Fix H5T_vlen_reclaim() and H5T_reclaim() to use private callback Add H5T_ref_reclaim() Move previous H5R APIs to H5Rdeprec.c Clean up H5Ocopy Separate H5O_copy_expand_ref() to H5Ocopy_ref() Add support for copying new reference types Clean up deprecated routines to go through VOL and same code path Fix return codes in existing trefer.c test Rename trefer.c to trefer_deprec.c trefer.c is for new references Add performance test for trefer Add additional obj_copy_ref test Make use of tokens and blobs to store references Skip blob encoding for object references Start adding new reference examples
* Fix CMake build of test needing compression libsAllen Byrne2019-09-031-1/+14
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* HDFFV-10677 and HDFFV-10661Binh-Minh Ribler2019-08-281-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Added functions to query chunk information: H5Dget_num_chunks(dset_id, fspace_id, *nchunks) Gets the number of written chunks that intersect with the given dataspace. However, in this version, the intersection is not yet completed. Thus, the number of all written chunks will be returned. H5Dget_chunk_info_by_coord(dset_id, *offset, *filter_mask, *addr, *size) Given a chunk's logical coordinates, returns the chunk's filter, address, and size. H5Dget_chunk_info(dset_id, fspace_id, index, *offset, *filter_mask, *addr, *size) Given a chunk's index, returns the chunk's logical coordinates, filter, address, and size. The chunk belongs to a set of chunks that have nonempty intersection with the specified dataspace. However, in this version, the intersection is not yet completed, and the index is of all the written chunks. These functions comply with VOL. - Fixed some oversights found in the library for the tests in chunk_info.c to work correctly. The returned value from a callback function was not checked in H5EA_iterate(), H5FA_iterate(), and H5D__none_idx_iterate(). This oversight caused a callback function to continue iterating even though it's supposed to stop. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
* Squashed commit of the following:Larry Knox2019-07-251-0/+3
| | | | | | | | | | | Merge changes from update_merged_S3_HDFS branch into develop. commit d5034315aea88629929ac0c9c59ebfafd5f21a31 Merge: 9c48823 d3fdcd8 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jul 25 08:24:53 2019 -0500 Merge branch 'develop' into update_merged_S3_HDFS
* HDFFV-8631 mingw is different platformAllen Byrne2019-07-171-2/+2
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* Add support for GCC9, update warnhist script, and clean up warnings.Quincey Koziol2019-07-031-0/+1
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* HDFFV-10805 Add option to only build shared targetsAllen Byrne2019-06-181-126/+103
| | | | | HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static HDFFV-10803 Update FindSZIP.cmake find module Remove unneeded modules and update java modules
* ESE-97 add vol_plugin test to CMake buildsAllen Byrne2019-04-251-2/+19
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* Fix CMake errorsAllen Byrne2019-04-181-1/+1
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* Forgot to add external_common.c and external_common.h.Songyu Lu2019-04-101-0/+2
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* Updated CMake for the splitting of external.c and vds.c.Songyu Lu2019-04-101-0/+2
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* CMake: fix pthread linking to only be privateJerome Soumagne2019-03-131-1/+6
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* Fix CMake H5_HAVE_THREADSAFE to set value in H5pubconf.hJerome Soumagne2019-02-211-1/+1
| | | | | | Add REQUIRED to find_package(Threads) Link against thread library if static and not WIN32 platform
* HDFFV-10703 Update CMake commands to latest standardAllen Byrne2019-02-151-10/+10
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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Vailin Choi2019-01-021-1/+1
|\ | | | | | | | | | | | | | | develop Resolve conflicts: Conflicts: test/Makefile.am
| * Fixed a CMake build issue (CMake still doesn't run the VOL pluginDana Robinson2018-12-281-1/+1
| | | | | | | | tests)
* | Fix for HDFFV-10659: The library abort with "infinite loop closing library"Vailin Choi2018-12-281-0/+1
|/ | | | | | | | after deleting attributes in densed storage. The fix: When deleting attribute nodes from the name index v2 B-tree, if an attribute is found in the intermediate B-tree nodes, which may be merged/redistributed in the process, we need to free the dynamically allocated spaces for the intermediate decoded attribute.
* HDFFV-10605 Only test plugins if SHARED enabledAllen Byrne2018-11-061-0/+2
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* VOL FEATUREDana Robinson2018-10-101-0/+33
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* CMake changes for SKIPPED and flush testsAllen Byrne2018-09-241-1/+1
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* Fix usage of compression lib in shared testsAllen Byrne2018-06-011-1/+18
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* Merge pull request #1043 in HDFFV/hdf5 from ↵Dana Robinson2018-05-311-0/+1
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:h5do_direct_chunk_hl_to_src to develop * commit '1da9c5545c013ebc540ba3044810889d4acfa5be': Restored some unused #defines to the deprecated section of H5Dpublic.h. Added deprecated symbol wrappers for the H5DOwrite/read_chunk wrappers. Updated commenting in the H5DO compat test. Stripped out most of the duplicated functionality in the H5DO compat test. * Added H5DO compatibility functions. * Changed the offset copy to use an array on the stack. * Yanked some unused #defines. * Fixed the error tests * Moved common functionality into helper functions Normalize with trunk prior to update merge Fixed a warning. Finished move of H5DOread/write_chunk calls to H5D. First stage of moving H5DOread/write_chunk() to src/ and making them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform and renamed to direct_write_perf. * Updated autotools and CMake files.
| * Merge branch 'develop' into h5do_direct_chunk_hl_to_srcDana Robinson2018-05-151-96/+77
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| * \ Merge branch 'develop' into h5do_direct_chunk_hl_to_srcDana Robinson2018-04-301-7/+23
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| * | | First stage of moving H5DOread/write_chunk() to src/ and makingDana Robinson2018-04-301-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform and renamed to direct_write_perf. * Updated autotools and CMake files.
* | | | Fix MPI on Windows by adding MPI include folderAllen Byrne2018-05-091-21/+21
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* | | Correct COMPILE defs usageAllen Byrne2018-05-091-1/+1
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* | | TRILABS-19 remove add_defintions and use generator expressionsAllen Byrne2018-04-261-96/+77
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* | TRILABS-20 set a compiler name on all project commandsAllen Byrne2018-04-201-1/+1
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* | TRILABS-19 Initial conversion of include_directories to targetsAllen Byrne2018-04-171-6/+22
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* HDFFV-10444 fix soversion numbers for librariesAllen Byrne2018-04-101-4/+4
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* Change CMake min to 3.10Allen Byrne2018-03-091-1/+1
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* Fix list varAllen Byrne2018-02-271-1/+1
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* Fix IN_LIST usageAllen Byrne2018-02-271-1/+1
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* Inc CMake min, Add new tests, rework test CMake filesAllen Byrne2018-02-271-113/+112
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* HDFFV-10385 rework java namesAllen Byrne2018-01-171-19/+0
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* HDFFV-9724 Corrected files and verified testsAllen Byrne2017-12-281-6/+6
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* Add library INTERFACE and MPI to toolsAllen Byrne2017-12-281-8/+10
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