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* Merge branch 'aug-develop' into aug-merge-attempt/feature/vfd_swmrDavid Young2020-08-041-2/+2
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| * Fix for jira issue HDFFV-11080:vchoi2020-07-141-1/+1
| | | | | | | | | | (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
| * Merge remote-tracking branch 'origin/develop' into monotonic_timerQuincey Koziol2020-06-261-67/+86
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| | * Align contents of CMake and autotools testfile cleanup lists.Quincey Koziol2020-05-031-8/+9
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| | * Avoid allocating a chunk index for datasets with 0-sized dimensions, untilQuincey Koziol2020-05-011-1/+2
| | | | | | | | | | | | the dataset is extended.
| | * Add Splitter VFD to library.Jacob Smith2020-03-131-6/+13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * "Simultaneous and equivalent" Read-Write and Write-Only channels for file I/O. * Only supports drivers with the H5FD_FEAT_DEFAULT_VFD_COMPATIBLE flag for now, preventing issues with multi-file drivers. Add Mirror VFD to library. * Write-only operations over a network. * Uses TCP/IP sockets. * Server and auxiliary server-shutdown programs provided in a new directory, `utils/mirror_vfd`. * Automated testing via loopback ("remote" of localhost).
| | * Replace pthread_self_ulong() with H5TS_thread_id(). The POSIX ThreadsDavid Young2020-02-031-1/+1
| | | | | | | | | | | | | | | implementation ought to be portable to any system that has POSIX Threads. On Windows, I use the same API call as before.
| | * Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings ↵David Young2019-11-271-7/+1
| | | | | | | | | | | | level and fixing some code.' (commit 5c911d8baf3)"
| | * Undo accidental test deletion.David Young2019-11-131-1/+1
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| | * Straggler from previous commit: build and link the new .c files where IDavid Young2019-11-131-1/+7
| | | | | | | | | | | | | | | moved some previously-static variables and functions that were causing unused-variable/function warnings.
| | * Change some GCC warnings to errors. Fix code to quiet some warnings.David Young2019-11-051-1/+1
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| | * Add new H5R API that abstracts object, region and attribute reference typesJerome Soumagne2019-10-081-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Also support references to external files Add new H5T_REF type and type conversion routines Support conversion from H5T_REF_OBJ/DSET_REG to H5T_REF Add H5Treclaim() API to reclaim memory of vlen/reference types Deprecate H5Dvlen_reclaim() Fix H5T_vlen_reclaim() and H5T_reclaim() to use private callback Add H5T_ref_reclaim() Move previous H5R APIs to H5Rdeprec.c Clean up H5Ocopy Separate H5O_copy_expand_ref() to H5Ocopy_ref() Add support for copying new reference types Clean up deprecated routines to go through VOL and same code path Fix return codes in existing trefer.c test Rename trefer.c to trefer_deprec.c trefer.c is for new references Add performance test for trefer Add additional obj_copy_ref test Make use of tokens and blobs to store references Skip blob encoding for object references Start adding new reference examples
| | * HDFFV-10677 and HDFFV-10661Binh-Minh Ribler2019-08-281-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Added functions to query chunk information: H5Dget_num_chunks(dset_id, fspace_id, *nchunks) Gets the number of written chunks that intersect with the given dataspace. However, in this version, the intersection is not yet completed. Thus, the number of all written chunks will be returned. H5Dget_chunk_info_by_coord(dset_id, *offset, *filter_mask, *addr, *size) Given a chunk's logical coordinates, returns the chunk's filter, address, and size. H5Dget_chunk_info(dset_id, fspace_id, index, *offset, *filter_mask, *addr, *size) Given a chunk's index, returns the chunk's logical coordinates, filter, address, and size. The chunk belongs to a set of chunks that have nonempty intersection with the specified dataspace. However, in this version, the intersection is not yet completed, and the index is of all the written chunks. These functions comply with VOL. - Fixed some oversights found in the library for the tests in chunk_info.c to work correctly. The returned value from a callback function was not checked in H5EA_iterate(), H5FA_iterate(), and H5D__none_idx_iterate(). This oversight caused a callback function to continue iterating even though it's supposed to stop. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
| | * Mostly whitespace in testpar, addl changes for tmp dirAllen Byrne2019-08-151-1/+2
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| | * Update COPYING file.Larry Knox2019-07-301-1/+1
| | | | | | | | | | | | Remove hdfs from list of vfds for check-vfd testing as it is read-only.
| | * Squashed commit of the following:Larry Knox2019-07-251-8/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Merge changes from update_merged_S3_HDFS branch into develop. commit d5034315aea88629929ac0c9c59ebfafd5f21a31 Merge: 9c48823 d3fdcd8 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jul 25 08:24:53 2019 -0500 Merge branch 'develop' into update_merged_S3_HDFS
| | * Some coding style changes.Songyu Lu2019-04-111-2/+2
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| | * HDFFV-10658 - setting and getting properties in API context:Songyu Lu2019-04-091-2/+2
| | | | | | | | | | | | | | | 1. switched to use the existing H5F_prefix_open_t for enum type; 2. put the common private function used by external.c and external_env.c into external_common.c
| | * This commit basically has the following changes:Songyu Lu2019-04-041-7/+11
| | | | | | | | | | | | | | | | | | 1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties. 2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables. 3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get.
| | * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Vailin Choi2019-01-021-11/+13
| | |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop Resolve conflicts: Conflicts: test/Makefile.am
| | | * Merge pull request #1413 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:yay_plugins ↵Dana Robinson2018-12-311-9/+10
| | | |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '3ca19cca5395d79be69209f8d7d0a2b06834a648': Flipped swapped testing strings. Added test_vol_plugin.sh to the list of scripts to clean Fixed a CMake build issue (CMake still doesn't run the VOL plugin tests) Added more sub-tests to the VOL plugin test. Added a simple test for registration of VOL connector plugins. Autotools only for right now, but this will be fleshed out in future work.
| | | | * Added test_vol_plugin.sh to the list of scripts to cleanDana Robinson2018-12-281-1/+2
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| | | | * Added a simple test for registration of VOL connector plugins.Dana Robinson2018-12-271-8/+8
| | | | | | | | | | | | | | | | | | | | | | | | | Autotools only for right now, but this will be fleshed out in future work.
| | | * | Move H5Fset_dset_no_attrs_hint VOL operations to native.Jacob Smith2018-12-181-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | Move minimzied object header tests from separate file to test/ohdr.c Some formatting changes.
| | | * | Merge branch 'develop' into dset_ohdr_minimizeJacob Smith2018-12-121-3/+15
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| | | * | change test file name and apply 'h5_fixname' to itJacob Smith2018-12-111-1/+1
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| | | * | Add presumptive test for external links.Jacob Smith2018-09-121-2/+2
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| | | * | Stash work on object header reduction code and tests.Jacob Smith2018-09-111-7/+8
| | | | | | | | | | | | | | | | | | | | CMake stuff is not verified.
| | * | | Fix for HDFFV-10659: The library abort with "infinite loop closing library"Vailin Choi2018-12-281-7/+9
| | | |/ | | |/| | | | | | | | | | | | | | | | | | | | | | | | | after deleting attributes in densed storage. The fix: When deleting attribute nodes from the name index v2 B-tree, if an attribute is found in the intermediate B-tree nodes, which may be merged/redistributed in the process, we need to free the dynamically allocated spaces for the intermediate decoded attribute.
| | * | Correct "make check-vol" regression test target.Quincey Koziol2018-11-291-0/+2
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| | * | Add support for "make check-vol", along with a few minor cleanups, etc.Quincey Koziol2018-11-291-0/+3
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| | * | VOL FEATUREDana Robinson2018-10-101-3/+10
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| * | | Changes to make timers within the library monotonic.Quincey Koziol2017-09-031-1/+2
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* | | | Add a test writer that creates groups under the root and a reader that pollsDavid Young2020-05-271-0/+3
| | | | | | | | | | | | | | | | until all of the expected groups appear.
* | | | Rebase repair: add stubs.c back to the test library sources.David Young2020-05-201-1/+1
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* | | | Align contents of CMake and autotools testfile cleanup lists.Quincey Koziol2020-05-201-8/+9
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* | | | Avoid allocating a chunk index for datasets with 0-sized dimensions, untilQuincey Koziol2020-05-201-1/+2
| | | | | | | | | | | | | | | | the dataset is extended.
* | | | Add Splitter VFD to library.Jacob Smith2020-05-201-6/+13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * "Simultaneous and equivalent" Read-Write and Write-Only channels for file I/O. * Only supports drivers with the H5FD_FEAT_DEFAULT_VFD_COMPATIBLE flag for now, preventing issues with multi-file drivers. Add Mirror VFD to library. * Write-only operations over a network. * Uses TCP/IP sockets. * Server and auxiliary server-shutdown programs provided in a new directory, `utils/mirror_vfd`. * Automated testing via loopback ("remote" of localhost).
* | | | Take out the temporary performance tests.David Young2020-05-201-2/+0
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* | | | Temporarily add some code that measures the time to run the simplest possibleDavid Young2020-05-201-0/+2
| | | | | | | | | | | | | | | | | | | | H5T__copy_all()-like routine 10 million times and then measures the version with FUNC_ENTER_STATIC/_LEAVE_NOAPI and a HGOTO_ERROR() statement.
* | | | Replace pthread_self_ulong() with H5TS_thread_id(). The POSIX ThreadsDavid Young2020-05-201-1/+1
| | | | | | | | | | | | | | | | | | | | implementation ought to be portable to any system that has POSIX Threads. On Windows, I use the same API call as before.
* | | | Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings ↵David Young2020-05-201-6/+0
| | | | | | | | | | | | | | | | level and fixing some code.' (commit 5c911d8baf3)"
* | | | Undo accidental test deletion.David Young2020-05-201-1/+1
| | | |
* | | | Straggler from previous commit: build and link the new .c files where IDavid Young2020-05-201-2/+7
| | | | | | | | | | | | | | | | | | | | moved some previously-static variables and functions that were causing unused-variable/function warnings.
* | | | Change some GCC warnings to errors. Fix code to quiet some warnings.David Young2020-05-201-1/+1
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* | | | Create a reader for the extensible datasets tests.David Young2020-05-071-4/+5
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* | | | Add my work-in-progress dataset test. It writes a handful of datasetsDavid Young2020-05-061-1/+4
| | | | | | | | | | | | | | | | | | | | that expand in one or two dimensions, depending on the setting of the -d option argument.
* | | | Add a `reader` personality to vfd_swmr_zoo_writer. Remove the disusedDavid Young2020-03-311-2/+5
| | | | | | | | | | | | | | | | | | | | `-t` option. Disable the error stack across create_/validate_zoo() calls.
* | | | Let tests provide a "hook" that runs after each step in create_zoo().David Young2020-03-231-1/+1
| | | | | | | | | | | | | | | | Provide a hook in vfd_swmr_zoo_writer that calls H5Fvfd_swmr_end_tick().
* | | | Take a stab at a "zoo" writer for VFD SWMR: write all of the sameDavid Young2020-03-201-2/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | objects as the cache_image test does. The zoo writer is a work in progress. This version is useful as a reproducer for the hang in the global heap that I stumbled over, yesterday. I run this to reproduce, env HLOG="pbio=on" ./vfd_swmr_zoo_writer -W -a
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