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----------------------
./MANIFEST
Added new Pablo files HDF5record_RT.h and ProcIDs.h
./acconfig.h
./configure [REGENERATED]
./configure.in
./src/H5.c
./src/H5Vprivate.h
./src/H5config.h.in [REGENERATED]
./src/H5private.h
./src/H5public.h
./test/big.c
Added more configuration stuff for the Win32 environment. Removed all
the #ifdef WIN32 from the source and replaced them with OS-independent
stuff. Specifics follow:
Check for non-Posix.1 `st_blocks' field in `struct stat' which is used
by the big file test to decide if the file system supports holes. If
the st_blocks field isn't present then we just skip the test.
Configure checks for <io.h> <sys/resource.h> <sys/time.h> and
<winsock.h> and defines HAVE_IO_H, HAVE_SYS_RESOURCE_H,
HAVE_SYS_TIME_H and HAVE_WINSOCK_H when they're found.
Configure checks whether both <sys/time.h> and <time.h> can be
included and defines SYS_TIME_WITH_TIME if so. Otherwise include only
<sys/time.h> or <time.h> even if both exist.
Configure checks sizeof(__int64) and defines SIZEOF___INT64 to the
result or to zero if __int64 isn't defined. The source uses `long
long' in preference to `__int64'.
Removed null WIN32 definition for `inline' since such a definition
already exists in H5config.h
Protected gettimeofday() calls in debugging code with
HAVE_GETTIMEOFDAY instead of WIN32.
./src/H5F.c
./src/H5Flow.c
./src/H5Fmpio.c
./src/H5Fsec2.c
./src/H5Fstdio.h
./src/H5P.c
./src/H5Tconv.c
./src/H5private.h
Removed #include of system files from library source files and
consolodated them into H5private.h where they're protected by various
configuration macros (most of them were duplicated there already
anyway).
./test/big.c
./test/chunk.c
./test/cmpd_dset.c
./test/dsets.c
./test/dtypes.c
./test/extend.c
./test/external.c
./test/fillval.c
./test/flush1.c
./test/flush2.c
./test/iopipe.c
./test/links.c
./test/mount.c
./test/mtime.c
./test/overhead.c
./test/ragged.c
./test/shtype.c
./test/unlink.c
Protected system #include's with #ifdef's from H5config.h.
Undefined NDEBUG since some of the tests rely on assert() to check
return values.
Removed WIN32 definitions for __unused__ since this can be controlled
by the definition of HAVE_ATTRIBUTE in H5config.h
./test/testhdf5.h
Removed the CLEAN_CMD definition because we no longer use it.
Albert's cleanup() functions replaced it.
./test/fillval.c
Initialized auto hid_t variables to fix warnings in error recovery
code when data flow analysis is turned on in compilers.
./test/h5tools.c
Initialized an auto variable to fix a compiler warning.
./test/chunk.c
./test/ragged.c
The WIN32 had some unsigned variables changed to signed because the
compiler generates warnings when coercing unsigned to double(?). I
changed them back to unsigned because they really are unsigned
quantities. If this the change was just to shut up extraneous warnings
then perhaps a compiler flag can do the same; otherwise if the
compiler generates bad code then we should supply a patch file instead
messing up source code with bug work-arounds.
./src/H5detect.c
Protected system #include's with #ifdef's from H5config.h thereby
removing a WIN32.
If getpwuid() doesn't exist (HAVE_GETPWUID) then we assume that
`struct passwd' doesn't exist either (we don't really need it in that
case).
The H5T_NATIVE_LLONG and H5T_NATIVE_ULLONG are defined in terms of
`long long' or else `__int64' or else `long' depending on what's
available.
./src/H5Flow.c
./src/H5Ofill.c
Added __unused__ to some function arguments that aren't used when
assertions are turned off.
./src/H5V.c
Changed an auto variable name in some hand-inlined code to get rid of
a warning about the variable shadowing a previous auto.
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changes: defined __unused__ as nothing, other little changes.
all changes are surrounded by #if defined(WIN32)
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----------------------
./doc/html/H5.format.html
./src/H5HG.c
Fixed a bug in the global heap that caused H5HG_read() to
write past the end of the buffer in certain cases.
./test/big.c
The test is skipped if hdf5 was configured with
`--disable-hsizet'.
./src/H5Ofill.c
Data type conversions are implemented for the fill value.
./src/H5.c
Tracing prints one of H5P_FILE_CREATE, H5P_FILE_ACCESS,
H5P_DATASET_CREATE, H5P_DATASET_XFER, or H5P_MOUNT instead of
the more cryptic H5I_TEMPLATE_* constants.
./src/H5D.c
Removed prototype for H5D_find_name().
./src/H5I.c
The GROUP_MASK and ID_MASK are both calculated from GROUP_BITS
instead of being set by hand.
We don't use the sign bit of hid_t; all valid hid_t values are
positive so we can say things like `if ((file=H5Fopen(...))<0)'.
Changed `(int)pow(2.0,x)' to `1<<x' so we don't have to worry
about rounding.
Fixed H5I_get_type() so it doesn't always fail an assertion.
./src/H5E.c
./src/H5Epublic.h
Added minor error H5E_MOUNT
./src/H5F.c
./src/H5Fprivate.h
Added H5Fmount() and H5Funmount(). Mounting and unmounting
works as documented but some of the other things aren't
implemented yet, the biggest being current working groups
always acting on the root of the mount tree, and H5Fclose()
closing the entire tree. The rest of the stuff will be added
shortly...
./src/H5P.c
./src/H5Ppublic.h
Added the H5P_MOUNT property list but haven't implemented any
particular properties for it yet.
./src/H5Gstab.c
Hard links across files return an error instead of failing an
assertion.
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----------------------
./Makefile.in
Running `make distclean' will not fail if one of the
subdirectories has already been cleaned.
./config/BlankForm
./config/irix5.3
Cleaned it up more. Added better support/documentation for
systems that have more than one compiler.
./config/alpha-dec-osf4.0 [NEW]
Added a new config file as a result of testing on Jim Reus's
machine.
./test/chunk.c
Scaled down the testing range so we can actually run it
interactively.
./tools/h5import.c
Included <unistd.h> to get rid of warning for close().
./src/H5detect.c
Seg-faults on Linux for some reason when NDEBUG is defined, so
I just undef it at the top of the source.
./test/big.c
Added a fflush().
./tools/h5ls.c
The `-d' flag now works even when `-v' isn't specified.
./examples/h5_chunk_read.c
./examples/h5_compound.c
./examples/h5_extend_write.c
./examples/h5_group.c
./examples/h5_read.c
./examples/h5_write.c
Indented according to hdf5 standards.
Fixed compiler warnings
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----------------------
./config/solaris2.5
Hopefully set up now so it honors the CC and CFLAGS variables
and understands solaris cc flags.
./test/big.c
Checks to see if creating lots of large sparse files exceeds
the user disk quota and skips the test. It also checks that
we can actually open ~64 files at once.
./doc/html/Files.html
./src/H5A.c
./src/H5Aprivate.h
./src/H5F.c
./src/H5Fpublic.h
Added the H5Fflush() function which takes any object as an
argument as long as the object is in some way associated with
a file. This required an H5A_entof()
./src/H5.c
./src/H5Flow.c
The `%a' format of HDfprintf() now allows a field width and
justification flag etc, like the other formats. The old
H5F_addr_print() was recoded to call HDfprintf() instead of
vice versa.
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----------------------
./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fsplit.c
Changed the allocation size request from `size_t' to `hsize_t'
because it was overflowing for the `big' test.
./src/H5detect.c
If `long double' and `double' are the same size then we define
H5T_NATIVE_LDOUBLE to be the same as H5T_NATIVE_DOUBLE.
Similarly for `long' vs. `long long' and `unsigned long' vs.
`unsigned long long'.
./test/Makefile.in
Added `big' to the list of tests to normally run.
./test/big.c
Added a check to see if the file system supports holes and if
it doesn't then the test is skipped.
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add tests for
point selections and strides.
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----------------------
./html/Datasets.html
Fixed a couple of typos.
./src/H5.c
Added the `Z' modifier to HDfprintf() for `size_t' sizes. Use
it like this:
HDfprintf(stderr,"size is %Zd\n", (size_t)x);
./src/H5AC.c
./src/H5F.c
./src/H5Fprivate.h
The maximum number of meta data objects that can be cached can
be set from the application (but the library might not honor
it every time; it's a hint).
./src/H5D.c
Changed a warning message so it's not so alarming.
./src/H5Fistore.c
Chunks can be cached.
./src/H5O.c
./src/H5Oprivate.h
Added H5O_copy() and H5O_free() to copy and free messages.
./src/H5P.c
./src/H5Ppublic.h
Added H5Pset_cache() and H5Pget_cache() and changed lots of
"template" to "property list".
./src/H5Z.c
./src/H5Zpublic.h
Miscellaneous little things to clean up. Mostly just removed
H5Z_MAXVAL and added H5Z_USERDEF_MIN and H5Z_USERDEF_MAX.
./MANIFEST
./test/Makefile.in
./test/chunk.c [NEW]
Added a performance test for chunk caching. It looks at the
amount of I/O instead of timing because timing is partly
dependent on the chunk size and I wanted a measurement that
was a function of only the cache size. Run `chunk' with no
arguments and then say `gnuplot x-gnuplot' to see the plots
(press return between plots). Postscript files are created for
each plot.
./test/big.c
./test/cmpd_dset.c
./test/extend.c
./test/external.c
./test/gheap.c
Added H5F_ACC_DEBUG so we can see cache performance
statistics.
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----------------------
./src/H5Bprivate.h
./src/H5F.c
./src/H5Ffamily.c
./src/H5Fprivate.h
./src/H5Gpkg.h
./src/H5MF.c
./src/H5P.c
./src/H5Ppublic.h
./test/big.c
./html/Big.html
./html/Files.html
Family members can now be any size >1kB. Got rid of some
places where we were reading a property list after it was
closed.
./MANIFEST
./src/Makefile.in
./src/h5repart.c
A program to repartition file families. The source and/or
destination may be files or file families. Examples:
testhdf5 -c -o stab
h5repart -m 1m tstab2.h5 x%05d.h5
h5repart -m 100k x%05d.h5 y%05d.h5
h5repart y%05d.h5 z.h5
diff tstab2.h5 z.h5
./src/h5ls.c
Added a usage message, replaced assertions with error
messages.
./config/linux
Made a warning message more obvious. Added better
optimization flags for Pentium-Pro's.
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./src/H5F.c
./src/H5G.c
./src/H5O.c
./src/H5Osdspace.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Z.c
./test/big.c
./test/cmpd_dset.c
./test/dsets.c
./test/extend.c
./test/istore.c
Now that I have a home-grown version of Purify I fixed all the
leaks in all the test files.
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----------------------
./html/H5.format.html
./src/H5E.c
./src/H5Epublic.h
./src/H5F.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gprivate.h
./src/h5ls.c
./test/Makefile.in
Symbolic links are now supported. The ./test/links program
will create a `links.h5' file that demonstrates hard links,
soft links, dangling links, and recursive links. A symbolic
link is a symbol table entity and doesn't have an object
header. It's format is described in H5.format.hml.
./src/H5G.c
./src/H5Gpublic.h
./src/h5ls.c
Implemented H5Gstat() and H5Gget_linkval() as documented by
Quincey. The `H5G_type_t type' field of `H5G_stat_t' was
changed to `int type' because H5G_type_t was already used and
the `type' data type should be open-ended.
./src/H5Ffamily.c
Removed an incorrect diagnostic message.
./test/big.c
Added read/write calls to test partial I/O to big contiguous
datasets. With no arguments it writes to a dataset and prints
the list of points written which should be redirected to a
file. With an argument (the name of a file containing the
stdout of a run with no arguments) values are read from the
dataset. One would typically say `big >x && big x'.
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----------------------
./src/H5Osdspace.c
./html/H5.format.html
In the past we were allowed to have >2GB files on a 32-bit
machine as long as no dataset within the file was larger than
4GB (or whatever sizeof(size_t) is). That's been fixed now.
All dataset size calculations are done with `hsize_t' which is
normally defined as `unsigned long long'.
./src/H5F.c
./src/H5Ffamily.c
./src/H5Fprivate.h
./src/H5P.c
./src/H5Ppublic.h
The file family member size can now be set/queried. The
default is still 64MB, but it can be set to 1GB by saying:
H5Pset_family (plist, 30, H5P_DEFAULT);
When opening an existing file family the specified
bits-per-member is ignored and the first member of the family
determines the bits-per-member, which can be retrieved with
H5Pget_family().
./acconfig.h
./configure.in
./src/H5config.h
./src/H5public.h
Added `--disable-hsizet' so that those with old GCC compilers
(<2.8.1) can still compile the code.
./src/H5.c
./src/H5private.h
Added HDfprintf() which works just like fprintf() except you
can give `H' as a size modifier for the integer conversions
and supply an `hsize_t' or `hssize_t' argument without casting
it. For instance:
hsize_t npoints = H5Sget_npoints(space);
HDfprintf(stdout,"Dataset has %Hd (%#018Hx) points\n",
npoints, npoints);
You can now give `%a' as a format to print an address, but all
formating flags are ignored and it causes the return value of
HDfprintf() to not include the characters in the address (but
who uses the return value anyway :-). Example:
H5G_t *grp;
HDfprintf(stdout, "Group object header at %a\n",
&(grp->ent.header));
Added HDstrtoll() which works exactly like [HD]strtol() except
the result is an int64.
./src/debug.c
Large addresses can now be entered from the command-line. Use
either decimal, octal (leading `0') or hexadecimal (leading
`0x') when giving the address.
./src/h5ls.c
The printf format for dataset dimensions was changed to `%Hu'
to support large datasets.
./test/big.c [NEW]
A test for big datasets on 32-bit machines. This test is not
run by default. Don't try to run it on an nfs-mounted file
system or other file system that doesn't support holes because
it creates two 32GB datasets of all zero.
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