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* [svn-r24020] Description:Quincey Koziol2013-08-171-552/+556
| | | | | | | | Clean up compiler warnings Tested on: Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* [svn-r22646] Description:Quincey Koziol2012-08-081-2/+2
| | | | | | | | | Changes resulting from Klocwork static analysis tool, from Mark Miller @ LLNL (miller86@llnl.gov). Tested on: Mac OS X/64 10.7.4 (amazon) w/debug, C++ & FORTRAN, using gcc 4.7.x (too minor to require h5committest)
* [svn-r18926] Description:Quincey Koziol2010-05-311-59/+0
| | | | | | | | Get down to just one "resize_configs_are_equal" comparison routine. Tested on: Mac OS X/32 10.6.3 (amazon) (too minor to require h5committest)
* [svn-r18917] Description:Quincey Koziol2010-05-271-137/+109
| | | | | | | | | | | | | | | | | | | | | | | | Bring r18911 (plus some adaptions to match the code on the trunk) from the metadata journaling "merging" branch to the trunk: More general changes to align trunk with eventual changes from metadata journaling branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18837] Description:Quincey Koziol2010-05-181-1293/+958
| | | | | | | | | | | | | | | | | | | | | | Remove the size parameter from H5[A]C_unprotect() and the H5[A]C__SIZE_CHANGED_FLAG, switching all clients & tests over to using H5[A]C_resize_entry appropriately. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18740] Description:Quincey Koziol2010-05-071-26/+22
| | | | | | | | | | | | | | | | | | | | | | | Bring r18738 from metadata journaling 'merging' branch to trunk: Switch H5AC_resize_pinned_entry() to work on protected entries as well, and rename to H5AC_resize_entry() Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18725] Description:Quincey Koziol2010-05-061-165/+165
| | | | | | | | | | | | | | | | | | | | | | Bring r18724 from metadata journaling 'merging' branch to trunk: Rename H5[A]C_rename to H5[A]C_move_entry. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18721] Description:Quincey Koziol2010-05-061-67/+16
| | | | | | | | | | | | | | | | | | | | | | | | | Bring r18720 from metadata journaling merging branch to trunk: Bring changes from metadata journaling branch to 'merging' branch: Rename H5[A]C_mark_pinned_or_protected_entry_dirty() to H5[A]C_mark_entry_dirty() and get rid of H5[A]C_mark_pinned_entry_dirty(). Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18702] Description:Quincey Koziol2010-05-051-50/+47
| | | | | | | | | | | | | | | | | | | | | | | Bring r18672 from metadata journaling "merging" branch to trunk: Mostly changes to move to only using one 'user data' parameter for calls to H5AC_protect(), along with some minor reformatting code cleanups. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18300] Description:Quincey Koziol2010-02-201-76/+198
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring Coverity fixes from branch to trunk: r18282: Fix Coverity issue #428 by wrapping testing calls with if(pass) {} block. r18283: Fix Coverity issue #425 by wrapping test calls in if(pass) {} block r18284: Issue 166: init_error() malloc'd 3 pointers in initialization and never freed inc ase of errors. Init pointers to NULL, check allocation results and free allocations in error block r18285: Fix Coverity issue #410 by wrapping test calls with if(pass) {} block. r18286: Issue 165: custom_print_cb() needed allocations freed in error block. r18287: Fix coverity issue # 409 Added if (pass) checks around calls to flush_cache. Additionally, added a check for file_ptr = NULL after call to setup_cache. r18288: Fix coverity# 107 free fh in H5HF_close() correctly before exit the function even when failure occurs. r18289: Fix Coverity issue #429: correct failure return values to match return type from routine. r18290: Fix Coverity issue #103: release allocated indirect section on error r18294: Issue 153, 152: Check allocations and free allocations in error block. Also cleaned up hid_t identifer that were opened in error block. r18295: Fix coverity# 101 free new_loc in H5HF_man_iter_start_entry() correctly before exit the function even when failure occurs r18296: Fix coverity# 100 free down_loc in H5HF_man_iter_down() before exit the function when failure occurs r18297: Fixed coverity issues 54, 55 and 216. Correctly handle the various ways that allocation of attr_name can fail in test_attr_basic_write. r18298: Fix coverity# 119 free object in H5HG_read() before exit the function when failure occurs r18299: Fix coverity issue #112: Add cleanup during error handling of H5MP_create. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & production Misc. Linux configurations (on original checkins)
* [svn-r18256] Description:Quincey Koziol2010-02-151-9/+39
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring changes from Coverity fixing branch to trunk: r18235: Fixed coverity 114: if (NULL ==_dest) H5MM_free(dest); r18236: Close Coverity issue #28 (again :-) by working through the logic of the routine more thoroughly to eliminate the goto statements. (LK & QK) r18237: fixed coverity 133: if (NULL==_dest && NULL==ret_value && NULL != dest) H5MM_free(dest); r18238: Fix coverity items 421 and 422. Added assertion that the heap's free list is NULL when entering H5HL_fl_deserialize, guarateeing that the free list will always be linked in even on failure. r18239: Fix coverity item 268. Changed H5MM_xfree(read_buf) to read_buf = H5MM_xfree(read_buf) so that read_buf isn't manipulated after it's been freed. r18241: coverity fix: use correct free functon H5FL_FREE()from the previous fix r18242: Coverity fix 139: Free dst correctly in H5O_sdspace_copy(). r18243: Fix Coverity issue #417 by checking for NULL return value from setup_cache() (LK & QK) r18244: Coverity Fix 132: free dest correctly in H5O_efl_copy() r18245: Issue 121: H5S_hyper_make_spans() cannot deal with counts of 0. However, H5Sselect_hyperslab() API does allow a count of 0. Therefore, simply throw an error if this function encounters a count of 0. r18246: Check file_ptr to address coverity issue # 418 r18247: Fixed coverity 113: if (sequence) H5MM_xfree(sequence); r18248: Coverity issue #414 by checking for NULL return from setup_cache() (LK & QK) r18249: fixed coverity 274: moved H5FL_FREE(H5A_t, attr); to a line above so that if attr is null, it will not free it. r18250: Fix coverity issue #86. Check return of malloc function to ensure non-null before continuing. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & production) (h5committested in daily tests on branch)
* [svn-r18230] Description:Quincey Koziol2010-02-111-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | Bring r18229 from metadata journaling "merging" branch into trunk: Bring r18227 from metadata_journaling branch to the merging branch: Small cleanups and move v1 cache maintenance macros into package header file, to better align with changes to v2 cache. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18197] Description:Quincey Koziol2010-01-301-363/+363
| | | | | | | | | Trim trailing whitespace from source code files with this command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - eyeballed only
* [svn-r18171] Description:Quincey Koziol2010-01-271-1592/+1630
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r18169 from 'merge_metadata_journaling' branch back to trunk: Converge changes on metadata_journaling branch and trunk: - Remove H5F_t* parameter from H5HL_unprotect() - Remove H5F_t* parameter from H5HL_dirty() - Remove H5F_t* parameter from H5O_unprotect() - Bring changes to metadata caching routines back: - H5AC_pin_protected_entry() - H5AC_resize_pinned_entry() - H5AC_unpin_entry() - H5AC_mark_pinned_entry_dirty() - H5AC_mark_pinned_or_protected_entry_dirty() - Revise internal H5C routines to drop H5F_t* and/or H5C_t* as parameter where possible - Revise tests to follow internal routine changes Also, drop file/cache pointer parameter from create/destroy flush dependency internal cache calls. Also, other minor changes to speedup the 'cache' test. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
* [svn-r18159] Description:Quincey Koziol2010-01-231-53/+69
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring Coverity fixes from 1/22/10 session to trunk: r18137: 219: Initialized hid_t to -1 and added close to error block. 189-191: Initialized line to NULL and added free line, and close fp to error block. r18138: 19: Moved code block for printing that the number of enums is empty to the error block. (Would never have been executed otherwise) r18139: Fix coverity item 58. Moved code related to displaying the parent of a repeated group to the else(isRoot) section, as the root group has no parent. r18140: 218: Initialized ret_value variable to -1. Because of throw Exception in default case of switch, the coverity problem would not have executed anyway. Good pratice is to initialize variables. r18141: Fix coverity item 92. Added code to H5E_register_class to free cls in case of an error. r18142: Fix coverity item 91. Added code to H5E_create_msg to free msg in case of an error. r18143: fixed issue 14, took away "if" and used #ifndef_xxx. r18144: Fix coverity item 110. Added code to H5Eget_minor to free msg_str in case of an error. r18145: fixed coverity #18 removed "aligned", it is always NULL. r18146: Fix coverity item 109. Added code to H5Eget_major to free msg_str in case of an error. r18147: Fixed coverity #81 and #82, Check for bad pointer(s), but can't issue error, just leave r18148: Fix coverity item 97. Added code to H5FD_fapl_open to free copied_driver_info in case of an error. r18149: Fix coverity item 96. Added code to H5FD_dxpl_open to free copied_driver_info in case of an error. r18150: Fix Coverity issue #29: Protected cache_ptr dereferences with "if(pass)" block r18151: Fix coverity item 93. Added code to H5FL_fac_init to free factory and new_node in case of an error. r18152: Fix coverity items 98 and 99. Added code free allocated space in case of error. r18155: 124: Freed head pointer before jumping to done. There was no error handling block and normal exit used same path out. 120-123: Freed list of lists in error handling block. r18156: Fix coverity issues 179, 180, 181, 182, 183, 184, 186, 320, 407. These were resource leak issues where allocated memory was not freed, generally in the case of tests that failed. Tested on: Mac OS X/32 10.6.2 (amazon) debug & production
* [svn-r18157] Description:Quincey Koziol2010-01-231-24/+13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring back changes from Coverity session on 1/15/10: r18111: Fix Coverity issue #130: make certain that the cache gets freed on error. r18112: Fix Coverity issue #43 by making cache testing calls protected by 'pass' variable. r18113: Fix Coverity issue #129 by releasing the cache on error. r18115: Coverity #45 fix: patched an error check in H5Screate_simple to prevent future dereferencing of a NULL point. Added a verification in test/th5s.c. r18116: Fix Coverity issue #43 by releasing cache on error. r18117: Coverity #362,363 by adding HGOTO_DONE, freeing allocations and associated changes. REsolving coverity results #364-368, 369, 370-372, 377, 379, and 380. r18118: Fix Coverity issue #42: assert that cache & test specification pointer are valid. r18122: Coverity #362,363 by adding HGOTO_DONE and freeing allocations. This also takes care of #357,358. r18123: Coverity #359-361, 373-376: Added HGOTO_DONE(FAIL) statement after checking allocation for NULL. Verified allocation is freed in done block. r18128: Fixed coverity issue #10 -- removed dead code. Tested on: Mac OS X/32 10.6.2 (amazon)
* [svn-r18109] Description:Quincey Koziol2010-01-151-47/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r18076-18096 from hdf5_1_8_coverity branch to trunk: r18076: Correct Coverity issue #1 by removing dead code r18077: Fix coverity item 142. When an error occurred while copying a linked list in H5S_point_copy, the library would not free the partially allocated list. Added code to free the list in this case. r18078: Correct Coverity issue #2 by removing impossible to reach code. r18079: Correct #3 by removing impossible to reach code. r18080: Correct Coverity issue #4 by removing impossible to reach code. r18081: fix coverity 26 , check (dblik->parent) before calls H5HF_man_iblock_detach(). r18082: Fixed coverity issues 321 and 316. 321: freed sm_buf in error handling to remove resource leak. Also set sm_buf to NULL after other instances in which it is freed to prevent double free. 316: initialized nmembs to 0. r18083: Correct Coverity issue #6 by removing debugging knob from error reporting code. r18084: Fix coverity item 269 + others. When a error occurred in a function using the h5tools error framework, the "past_catch" variable would not be set to true because that statement was before the label that goto jumped to. This could cause a failure in the cleanup section to go back to the start of the section, freeing variables twice, etc. Moved the label infront of past_catch=TRUE. r18085: fixed coverity #27, check if (heap) before use heap->obj.... r18086: fixed coverity #28, check curr_span not null before use it at if(curr_span && (io_bytes_left==0 || curr_seq>=maxseq)) r18087: Correct Coverity issue #7 by cleaning up correctly on error r18088: Correct Coverity #8 by removing unchanged variable checking code. r18089: Correct Coverity issue #9 - remove impossible to reach code. r18090: Correct Coverity issue #11 by removing impossible to reach code. Also clean up some minor style issues. r18091: Fix coverity items 314 and 318. Changed the improper assertion of the return value of a library function to a check, and a return(void) on failure. r18092: Fix coverity item 70. Changed the improper assertion of the return value of a library function to a check, and a return(void) on failure. r18093: Correct Coverity issue #12 by removing dead code. r18094: Correct Coverity issue #16 by removing debugging code. r18095: Fixed coverity issue # 271. Removed redundant checking and freeing of sm_buf1 and sm_buf2. r18096: Correct Coverity issue #17 by refactoring test to remove dead code. Also, removed previous "coverity" statements in comments, we'll review those issues again and see if we can figure them out, now that we have more experience with Coverity. Tested on: Mac OS X/32 10.6.2 (amazon)
* [svn-r17268] Description:Quincey Koziol2009-07-301-165/+165
| | | | | | | | | | | Bring r17266 from 1.8 branch to trunk: Clean up various compiler warnings from IRIX64 build Tested on: Mac OS X/32 (amazon) debug & production (yes, I know it's not an IRIX64 system :-) Too minor to require h5committest
* [svn-r16982] Description:Quincey Koziol2009-05-261-225/+257
| | | | | | | | | | | | | | | | | | | | | | | | Add library private routines to allow metadata cache entries to be set as flush dependency children on extensible array entries. This will allow chunk proxies to be set as child flush dependencies for the extensible array, adding another necessary layer to the flush dependency chain for SWMR access. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16874] Description:Quincey Koziol2009-04-281-0/+201
| | | | | | | | | | | | | | | | | | | | | Add test for cache client 'notify' callback. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16632] Description:Quincey Koziol2009-03-311-1/+1
| | | | | | | | | | | | | | | | | | | | | | Remove unnecessary 'udata' parameter from H5AC_set() and 'notify' callback (introduced with checkin that added the 'notify' callback) Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16630] Description:Quincey Koziol2009-03-311-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | Add 'notify' callback to metadata cache clients, so that they can be aware when the cache has taken/will take certain actions. Notifications are urrently limited to when an entry has successfully entered the cache (via an insertion or a load from the file) and when an entry is about to be evicted from the cache. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16625] Description:Quincey Koziol2009-03-301-30/+67
| | | | | | | | | | | | | | | | | | | | | | Add mechanism for querying if an entry in the metadata cache is the parent or child in a flush dependency relationship. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16618] Description:Quincey Koziol2009-03-261-50/+145
| | | | | | | | | | | | | | | | | | | | | | Modify metadata cache flush dependency feature to allow it to work with entries that are pinned through the cache API calls. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16600] Description:Quincey Koziol2009-03-241-972/+3004
| | | | | | | | | | | | | | | | | | Ensure that metadata cache entries with flush dependencies are written to the file in the correct order (for serial I/O, at least). Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16587] Description:Quincey Koziol2009-03-171-305/+2255
| | | | | | | | | | | | | | | | | | | | Add infrastructure & tests for "flush dependencies" in metadata cache, which allow relationships that specify which order to flush metadata entries in. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16576] Description:Quincey Koziol2009-03-121-1/+1
| | | | Actually set the exit value for the test (*sigh*)
* [svn-r16574] Description:Quincey Koziol2009-03-121-228/+200
| | | | | | | | | | | | | | | | | | | | | | Clean up many compiler warnings and make test return non-zero exit code when a failure is detected. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16560] Description:Quincey Koziol2009-03-101-2/+0
| | | | | | | | | | Remove another call to H5E_clear_stack() from within the library. Clean up lots of compiler warnings. Tested on: Mac OS X/32 10.5.6 (amazon) (followup on other platforms forthcoming)
* [svn-r16338] Purpose: Mike McGreevy2009-01-221-5/+0
| | | | | | | | | | | | | | Bug Fix Description: Removing some unnecessary system headers from test/cache.c which snuck their way into one of my previous check-ins ... thanks to Allen for catching this while testing on Windows. Tested: Windows, Linux
* [svn-r16290] Purpose: Mike McGreevy2009-01-091-26/+1583
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Adding code to maintain a min_clean_fraction in the cache in serial mode. Description: The metadata cache now has the ability to maintain a min_clean_fraction when in serial mode. The default initial cache size has been changed from 1MB to 2MB, and the default min_clean_fraction has been set at 30%. This check-in includes modifications to H5C.c to support maintaining a min_clean_size, including the addition of clean_index_size and dirty_index_size trackers, modifications to the H5C_make_space_in_cache algorithm, as well as associated test code and additional statistics tracking variables. Maintaining the min_clean_fraction addresses the possibility of experiencing a "metadata blizzard" when the cache gets completely full with dirty entries. Upon having to make space, the cache would previously need to flush every single entry in the cache before coming across a clean entry which could be evicted. This resulted in unnecessary flushing of oftentimes hot entries in the cache. Maintaining the min_clean_fraction ensures that, when space is needed, clean entries are more readily available to evict. Tested: jam, smirom, linew (h5committest)
* [svn-r15800] Description:Quincey Koziol2008-10-071-3/+3
| | | | | | | | | | | | | | | | | | | | | | | Bring file free space branch changes through r15795 into trunk, which includes a fair bit of code cleanup & rearrangement along with a couple of bug fixes also. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15628] Description:Quincey Koziol2008-09-161-467/+467
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r14442] Modified metadata cache to adapt more quickly to the insertion of aJohn Mainzer2008-01-181-18/+1939
| | | | | | | | | | | | | | | | | large entry, or to a large increases in the size of an existing entry. This required some additions to the cache configuration structure, and thus will require changes in the metadata cache documentation. The basic idea is to monitor the size of entries as they are loaded, inserted, or increased in size. If the size of the entry (or increase) exceeds some user selected fraction of the size of the cache, increase the size of the cache. Note that this fix was designed quickly -- while it deals with the use case that exposed the problem, we may have to revisit the issue later. Tested serial and parallel on Phoenix, and h5committest.
* [svn-r14064] Implemented function allowing the user to cork the metadata cache.John Mainzer2007-08-101-0/+1456
| | | | Also implemented associated test code.
* [svn-r13697] Fixed error in check_unprotect_ro_dirty_err() in cache.c. ↵John Mainzer2007-04-241-4/+6
| | | | | | | | | Basic problem was a failure to clean up properly after a test. I reproduced the failure on Phoenix before fixing it. As the error was relatively straight forward, I tested fix on Phoenix only.
* [svn-r13691] Description:Quincey Koziol2007-04-211-0/+2
| | | | | | | Comment out cache test until John can take a look at it. Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13690] Description:Quincey Koziol2007-04-191-6/+0
| | | | | | | | | | | | | Fully enable readers/writer locking in metadata cache and correct errors in cache clients which were modifying a cache entry while only holding a read lock on it. Tested on: Mac OS X/32 10.4.9 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty)
* [svn-r13634] Description:Quincey Koziol2007-04-111-12/+2
| | | | | | | | Remove a "//" comment from John's recent changes and clean up a few warnings. Tested on: Mac OS X/32 10.4.9 (amazon)
* [svn-r13618] Modified metadata cache to support multiple read only protects of John Mainzer2007-04-091-1/+665
| | | | | | | | | | cache entries. Added test code to test the new feature. Also some minor cleanum h5committested -- passed on copper and sol. Failed on osage with a configuration error that appears unrelated to my changes. Serial test (debug mode) passes on Phoenix (Linux x86 2.6 kernel), so I went ahead with the checkin.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r12833] Description:Quincey Koziol2006-10-311-34/+34
| | | | | | | | Clean up more warnings... Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12774] Modified flush code in the metadata cache to allow it toJohn Mainzer2006-10-181-3/+5426
| | | | | | | | | | | | | | | | | handle flush callbacks which can dirty other entries, and resize and/or rename the target entry. This feature is needed by the fractal heap code. Also added associated test code. H5Commit tested. Test failed on heping, but the error appears to be a syntax error in an un-related file. Tests on copper & sol passed, along with tests on phoenix.
* [svn-r12595] Modified H5C_insert_entry() to accept the H5C__PIN_ENTRY_FLAG entryJohn Mainzer2006-08-171-0/+305
| | | | | | | | | | | flag, and pin an entry as it is inserted. The objective is to avoid some function call overhead in fheap. Also added matching test code in test/cache.c & test/cache_common.c (also testpar/t_cache.c checked in separately by accident) h5commit tested
* [svn-r12462] Committed a variety of metadata cache related changes:John Mainzer2006-07-131-0/+1459
| | | | | | | | | | | | | | | | | | | | | | 1) Added trace file support to the metadata cache. This allows capture of all metadata cache calls in trace files for purposes of optimization and debuging. 2) Added an expunge entry function. This allows an entry to be deleteded from the cache without writing it to disk even if it is dirty. 3) Added a function call to resize pinned entries. 4) Added code to deal with entries that are dirty on load. This is needed in support of a bug fix which can alter object headers on load to repair files. 5) Added progress reporting code to the "MDC API smoke check" test in cache_api.c. To enable the progress reporting, set report_progress to TRUE in mdc_api_call_smoke_check(). Tested with h5committest, and a parallel test on phoenix (dual athelon linux box).
* [svn-r12440] Purpose:Quincey Koziol2006-06-271-58/+58
| | | | | | | | | | | Code cleanup Description: Trim trailing whitespace in Makefile.am and C/C++ source files to make diffing changes easier. Platforms tested: None necessary, whitespace only change
* [svn-r12374] Purpose:John Mainzer2006-05-241-1257/+425
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 1) Check in potential fix to unreproduceable bug in t_cache observed on Cobalt 2) Check in code supporting added pinned entry features in the metadata cache. Description: 1) Elena encountered a bug in t_cache when running on Cobalt. On investigation I found a potential race condition in t_cache that could explain her observation. 2) Quincey requested additions to the metadata cache allowing renaming of pinned entryies, and marking of pinned or protected entries as dirty. Solution: 1) Modified t_cache.c to prevent the potential race condition. Elena was unable to reproduce the bug on Cobalt, so we don't know if my fix actually addressed the problem. 2) Added code supporting the requested functions. The changes were relatively trivial, but required substantial new test code. Platforms tested: h5committest, serial test on heping, parallel test on phoenix. Misc. update:
* [svn-r12321] Purpose:John Mainzer2006-05-021-197/+201
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix Description: Fix two test bugs: 1) Unitialized variable bug in test of H5C_get_entry_status() (in test/cache.c) 2) Incorrect initialization of constant in t_cache when running with MPE. (in testpar/t_cache.c) Solution: 1) Don't test uninitialize variable. 2) Correct initialzation of constant in MPE case. Platforms tested: Tested on Heping and Copper. Misc. update:
* [svn-r12316] Purpose:Quincey Koziol2006-04-291-19/+26
| | | | | | | | | | | | | | | Code cleanup/feature twist Description: Adjust recent H5AC routines to take H5F_t pointers instead of H5C_t pointers, to match the rest of the H5AC routines. This change propagated into a few of the tests, which also had some compiler warnings cleaned up... Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Linux 2.4/64 (mir) w/C++ & FORTRAN
* [svn-r12311] Purpose:John Mainzer2006-04-281-21/+3587
| | | | | | | | | | | | | | | | | | | | | | | | | Add pinned entry capability to cache. Description: For frequently accessed cache entries, the protect/unprotect overhead is sometimes a bottleneck. Solution: Allow entries to be pinned in the cache. Pinned entries can't be evicted, but can be flushed or modified. Platforms tested: h5committested -- minus one small typo in test/cache.c whose fix was tested on copper and heping only. Misc. update:
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