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* Update copyright headers (#2184)Larry Knox2022-11-011-1/+0
| | | | | * Updated source file copyright headers to remove "Copyright by the Board of Trustees of the University of Illinois", which is kept in the top-level COPYING file.
* Develop clang 13 format (#1933)Allen Byrne2022-07-261-2/+2
| | | | | * Update format source to clang 13 * More format changes
* Set default level to minimum time (#1722)Allen Byrne2022-05-171-1/+1
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* h5test.h testing macros get enclosed in do..while loops (#1721)Dana Robinson2022-05-041-8/+8
| | | | | | | * h5test.h testing macros get enclosed in do..while loops * Adds missed macro in hl C++ code * Fixes macro in Windows code
* Snprintf2 (#1399)Sean McBride2022-01-281-1/+1
| | | | | | | | | | | | | * Replaced many uses of sprintf with safer snprintf Many very straightforward, but in a few cases added a length parameter to some private functions, because buffer length was otherwise unknowable. * Removed unnecessary use of static on small buffers This improves thread safety. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-071-4/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* OESS-168: Remove clang warnings. (#1076)H. Joe Lee2021-10-081-1/+1
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* VFD plugins (#602)jhendersonHDF2021-09-291-21/+26
| | | | | | | | | | | | | | | | | * Implement support for loading of Virtual File Drivers as plugins Fix plugin caching for VOL connector and VFD plugins Fix plugin iteration to skip paths that can't be opened * Enable dynamic loading of VFDs with HDF5_DRIVER environment variable * Temporarily disable error reporting during H5F_open double file open * Default to using HDstat in h5_get_file_size for unknown VFDs * Use macros for some environment variables that HDF5 interprets * Update "null" and "ctl testing" VFDs
* Removes obsolete equivalents of C99's __func__ (#800)Dana Robinson2021-06-291-24/+24
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* Removes gratuitous (double)x.yF casts (#632)Dana Robinson2021-05-071-87/+87
| | | | | | | | | * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Update clang config (#473)Quincey Koziol2021-03-171-15/+60
| | | | | | | * Update clang config to put H5E_BEGIN_TRY / H5E_END_TRY on separate lines, empty C++ methods on separate lines, understand that ALL_MEMBERS / UNIQUE_MEMBERS are foreach macros, and properly skip the 'config' directory in the find command without emiting a warning * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Update license url (#332)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories.
* HD prefix updates in src/ and test/Dana Robinson2020-10-241-5/+5
| | | | | | | Adds missing HD prefixes to API calls in src and test. Adds some extra processing to bin/checkposix to keep the noise levels down when running the script (not comprehensive).
* Clang-format of source filesAllen Byrne2020-09-301-975/+858
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* Revert "Revert "Moved -Wunsuffixed-float-constants to the developer warnings.""Dana Robinson2020-01-231-4/+4
| | | | This reverts commit 6486e06545bf637d46e18a787395542f4fca143a.
* HDFFV-10979 cleanup globalsAllen Byrne2019-12-121-6/+5
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* HDFFV-10979 fix global name clashAllen Byrne2019-12-111-0/+6
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* Add HD prefix to testsAllen Byrne2019-08-151-40/+40
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* VOL FEATUREDana Robinson2018-10-101-2/+2
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Final merge of page buffering branch to developQuincey Koziol2017-03-141-34/+71
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* Corrected version of 4b5e05c084f93c35dae946c2c9e814d565a613b0:Quincey Koziol2017-02-281-10/+3
| | | | | Fix some more signed -> unsigned value issues with cache data structures, also misc. style cleanups. All to align w/incoming page_buffering changes.
* Revert "Fix some more signed -> unsigned value issues with cache data ↵Quincey Koziol2017-02-281-3/+10
| | | | | | structures, also" This reverts commit 4b5e05c084f93c35dae946c2c9e814d565a613b0.
* Fix some more signed -> unsigned value issues with cache data structures, alsoQuincey Koziol2017-02-231-10/+3
| | | | misc. style cleanups. All to align w/incoming page_buffering changes.
* HDFFV-10124 Using cache_common.h contains other include filesAllen Byrne2017-02-021-3/+0
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* [svn-r29959] Fixed some bad logic in the cache_api test that causedDana Robinson2016-05-241-28/+27
| | | | | | | EXIT_FAILURE to be returned from the test. Tested on: 64-bit Ubuntu Linux w/ gcc 5.3.1 Autotools serial
* [svn-r29957] Changes to cache_api.cDana Robinson2016-05-241-1410/+388
| | | | | | | | | | | | | - Cleaned up mixed tabs and spaces that mis-aligned brackets. - Test functions now return hbool_t to match the global pass variable. - Main now returns EXIT_SUCCESS/EXIT_FAILURE. - The invalid_configs array is now allocated dynamically instead of statically. This reduces the frame size, removing some warnings and making it easier for platforms/compilers that have frame size issues (e.g.: zOS). Tested on: 64-bit Ubuntu Linux w/ gcc 5.3.1 Autotools serial
* [svn-r29882] Convert cache source files to library compatible by CMake and ↵Allen Byrne2016-05-041-2/+0
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* [svn-r28138] Add first support for _Bool and make hbool_t a "real" _Bool if ↵Jerome Soumagne2015-10-201-105/+35
| | | | | | | | | | | | | | available Fix tests accordingly and fix misuse of hbool_t in various places Fix initialization of H5Pgcpl/ocpl structs in property decoding routines Tested on: Linux/32 (jam) Linux/64 (platypus) Linux/PPC64 (ostrich) MacOSX/64 10.11
* [svn-r27548] Revert r27545Jerome Soumagne2015-08-211-35/+105
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* [svn-r27545] Add first support for _Bool and make hbool_t a "real" _Bool if ↵Jerome Soumagne2015-08-211-105/+35
| | | | | | available Fix tests accordingly
* [svn-r27237] Description:Quincey Koziol2015-06-181-0/+3
| | | | | | | | | Merge v3 metadata cache changes to trunk. Yay! :-) Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (daily tested on branch)
* [svn-r27204] Description:Quincey Koziol2015-06-151-32/+27
| | | | | | | | | Clean up compiler warnings before merging in v3 metadata cache changes from branch. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27199] Description:Quincey Koziol2015-06-131-177/+39
| | | | | | | | | Large code cleanups and optimizations, in preparation for the upcoming v3 metadata cache merge. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27084] Description:Quincey Koziol2015-05-151-21/+37
| | | | | | | | Clean up cache tests, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r26333] Eliminates gcc warnings due to -Wunsuffixed-float-constants.Dana Robinson2015-03-011-4/+4
| | | | | | | | | | | | - Adds 'F' suffixes for most float constants. - A few constants MUST be of type double. These now receive the long double L suffix and are then cast to double. I do this via a new H5_DOUBLE() macro which was added to H5private.h. Fixes: HDFFV-9148 Tested on: h5committest
* [svn-r25496] Description:Quincey Koziol2014-07-301-7/+7
| | | | | | | | | Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r24869] Description:Quincey Koziol2014-03-231-4/+0
| | | | | | | | | | | | | | | | | | | | | | | | | Clean up more compiler warnings, plus merge a few Coverity bug fixes from the hdf5_1_8_coverity branch back to the trunk: r20877: Purpose: Fix coverity issue 1723 Description: Modified test_generate in hl/test_image to close file "f" before exit, even if an error occurs. r20879: Issue 63: change check of return of H5Tget_nmembers to <=0. No need to go futher if call fails as well as empty. r20881: Coverity #659 in Run 46: I changed the Line 442 where it tries to check whether FLAG_PRINTED is TRUE. But it had just been set to FALSE. I took out the condition check in the print statement. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & Parallel (too minor to require h5committest)
* [svn-r24030] Description:Quincey Koziol2013-08-191-398/+398
| | | | | | | | Clean up more compiler warnings. Tested on: Mac OSX/64 10.8.4 (amazon) w/gcc, C++ & FORTRAN (too minor to require h5committest)
* [svn-r19096] Description:Quincey Koziol2010-07-191-53/+182
| | | | | | | | | | | | | | | | | | | | | Bring "round robin" metadata write strategy code from 'round_robin' branch to the trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18926] Description:Quincey Koziol2010-05-311-4/+4
| | | | | | | | Get down to just one "resize_configs_are_equal" comparison routine. Tested on: Mac OS X/32 10.6.3 (amazon) (too minor to require h5committest)
* [svn-r18917] Description:Quincey Koziol2010-05-271-515/+5
| | | | | | | | | | | | | | | | | | | | | | | | Bring r18911 (plus some adaptions to match the code on the trunk) from the metadata journaling "merging" branch to the trunk: More general changes to align trunk with eventual changes from metadata journaling branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18702] Description:Quincey Koziol2010-05-051-4/+5
| | | | | | | | | | | | | | | | | | | | | | | Bring r18672 from metadata journaling "merging" branch to trunk: Mostly changes to move to only using one 'user data' parameter for calls to H5AC_protect(), along with some minor reformatting code cleanups. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18171] Description:Quincey Koziol2010-01-271-15/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r18169 from 'merge_metadata_journaling' branch back to trunk: Converge changes on metadata_journaling branch and trunk: - Remove H5F_t* parameter from H5HL_unprotect() - Remove H5F_t* parameter from H5HL_dirty() - Remove H5F_t* parameter from H5O_unprotect() - Bring changes to metadata caching routines back: - H5AC_pin_protected_entry() - H5AC_resize_pinned_entry() - H5AC_unpin_entry() - H5AC_mark_pinned_entry_dirty() - H5AC_mark_pinned_or_protected_entry_dirty() - Revise internal H5C routines to drop H5F_t* and/or H5C_t* as parameter where possible - Revise tests to follow internal routine changes Also, drop file/cache pointer parameter from create/destroy flush dependency internal cache calls. Also, other minor changes to speedup the 'cache' test. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
* [svn-r18109] Description:Quincey Koziol2010-01-151-115/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r18076-18096 from hdf5_1_8_coverity branch to trunk: r18076: Correct Coverity issue #1 by removing dead code r18077: Fix coverity item 142. When an error occurred while copying a linked list in H5S_point_copy, the library would not free the partially allocated list. Added code to free the list in this case. r18078: Correct Coverity issue #2 by removing impossible to reach code. r18079: Correct #3 by removing impossible to reach code. r18080: Correct Coverity issue #4 by removing impossible to reach code. r18081: fix coverity 26 , check (dblik->parent) before calls H5HF_man_iblock_detach(). r18082: Fixed coverity issues 321 and 316. 321: freed sm_buf in error handling to remove resource leak. Also set sm_buf to NULL after other instances in which it is freed to prevent double free. 316: initialized nmembs to 0. r18083: Correct Coverity issue #6 by removing debugging knob from error reporting code. r18084: Fix coverity item 269 + others. When a error occurred in a function using the h5tools error framework, the "past_catch" variable would not be set to true because that statement was before the label that goto jumped to. This could cause a failure in the cleanup section to go back to the start of the section, freeing variables twice, etc. Moved the label infront of past_catch=TRUE. r18085: fixed coverity #27, check if (heap) before use heap->obj.... r18086: fixed coverity #28, check curr_span not null before use it at if(curr_span && (io_bytes_left==0 || curr_seq>=maxseq)) r18087: Correct Coverity issue #7 by cleaning up correctly on error r18088: Correct Coverity #8 by removing unchanged variable checking code. r18089: Correct Coverity issue #9 - remove impossible to reach code. r18090: Correct Coverity issue #11 by removing impossible to reach code. Also clean up some minor style issues. r18091: Fix coverity items 314 and 318. Changed the improper assertion of the return value of a library function to a check, and a return(void) on failure. r18092: Fix coverity item 70. Changed the improper assertion of the return value of a library function to a check, and a return(void) on failure. r18093: Correct Coverity issue #12 by removing dead code. r18094: Correct Coverity issue #16 by removing debugging code. r18095: Fixed coverity issue # 271. Removed redundant checking and freeing of sm_buf1 and sm_buf2. r18096: Correct Coverity issue #17 by refactoring test to remove dead code. Also, removed previous "coverity" statements in comments, we'll review those issues again and see if we can figure them out, now that we have more experience with Coverity. Tested on: Mac OS X/32 10.6.2 (amazon)
* [svn-r17268] Description:Quincey Koziol2009-07-301-4/+4
| | | | | | | | | | | Bring r17266 from 1.8 branch to trunk: Clean up various compiler warnings from IRIX64 build Tested on: Mac OS X/32 (amazon) debug & production (yes, I know it's not an IRIX64 system :-) Too minor to require h5committest
* [svn-r15628] Description:Quincey Koziol2008-09-161-4/+4
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r14445] Added code to detect the situation in which a metadata cache ↵John Mainzer2008-01-201-11/+16
| | | | | | | | | | | | | | entry flush callback functions modifies the skip list or LRU out from under a partial or complete flush of the cache. This is a test for a situation that should not occur, but we test anyway. Also added code to skip longer tests in cache_api in express tests. Tested serial and parallel on phoenix (debian --x86-32), and commit test. Elena commit tested as well, and ran a manual test under MacOS X.
* [svn-r14442] Modified metadata cache to adapt more quickly to the insertion of aJohn Mainzer2008-01-181-18/+371
| | | | | | | | | | | | | | | | | large entry, or to a large increases in the size of an existing entry. This required some additions to the cache configuration structure, and thus will require changes in the metadata cache documentation. The basic idea is to monitor the size of entries as they are loaded, inserted, or increased in size. If the size of the entry (or increase) exceeds some user selected fraction of the size of the cache, increase the size of the cache. Note that this fix was designed quickly -- while it deals with the use case that exposed the problem, we may have to revisit the issue later. Tested serial and parallel on Phoenix, and h5committest.
* [svn-r14199] Description:Quincey Koziol2007-10-111-3/+3
| | | | | | | | | | | | | | | | | | | | | Add H5Dcreate to API versioned routines, replacing internal usage with H5Dcreate2 Fix thread-safe error stack initialization for API versioned error stack printing routines. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
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