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* VFD SWMR: Normalization with develop (#1078)Dana Robinson2021-10-061-5/+373
| | | Brings many changes from develop, particularly VOL changes for async
* VFD SWMR: sync with develop (#830)Dana Robinson2021-07-121-17/+26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Normalization with develop * Removes checks and work-arounds for strtoll and strtoull (#769) * Removes checks for (v)snprintf, which are C99 (#772) * Update missing release note info. (#776) * Replaces the H5_OVERRIDE macro with override (#773) The macro is no longer necessary now that we require C++11. * Cleans up some POSIX header bits in H5private.h (#783) * Removes outdated checks for ways inline might be defined (#781) These are obsolete now that we require C99. * Removes checks for system(), which is C89/90 (#782) * Removes C++ dependency on H5private.h (#774) * Removes C++ dependency on H5private.h Most C API calls have been removed, aside from a few uses of free, where we just dropped the 'HD'. A couple of H5_ATTR_UNUSED macros were also replaced with (void) statements. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Further simplifies Autotools type size checks (#789) Also fixes an issue where clock_gettime and difftime are not detected due to earlier simplifications of this code. * Release Note (#784) * Normalization of CMake H5pubconf.h with Autotools (#791) Mostly just moving things around and changing the comments to keep the delta small. The only symbol change is that for curl/curl.h which I changed to H5_HAVE_CURL_CURL_H to match the Autotools. This symbol is not used in the library and is just an artifact of the checks. * Fix tools test (#794) * Removes ancient Autotools cruft (#790) * Reorganization of C and POSIX headers in H5public.h & H5private.h (#793) * Reorganization of C and POSIX headers in H5public.h & H5private.h Consolidated and removed duplicates * It turns out Windows has sys/types.h Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Removes checks for signal and set/longjmp, which are C89 (#798) Also removes checks for setjmp.h and stddef.h * Assume frexpl/f and fabsl/f, which are C99 (#799) * Assume the library has C99 types in C++ type code (#806) * Assume the library has C99 types in C++ type code * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes obsolete equivalents of C99's __func__ (#800) * Cleans up POSIX/C bits in H5private.h (#804) * Cleans up POSIX/C bits in H5private.h * Assume difftime exists (C89) * Reorg AC_CHECK_HEADERS so headers are in alphabetical order * Split off networking-related AC_CHECK_HEADERS * Remove unused UNAME_CYGWIN from configure.ac * Remove checks for unused sys/timeb.h * Tidying pass over H5private.h HD prefix macros * Tidy H5win32defs.h * Add HD prefix to various scanf calls * Committing clang-format changes * Fixes to the alarm(2) code used in the tests to make Windows happy Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Brings the tools getopt(3) replacement into the main library (#803) * Moves get_option from the tools library to the C library * Adds H5 prefix to get_option call and variables * Renames the H5_get_option long options struct and enum * Removes type guesses when C99 types are missing (#807) * Assume C99 types exist in H5detect.c (#808) * Fixes parallel issues from recent C99 changes * Adds MPE FUNC --> __func__ changes missed in earlier PRs * Fix typo * Fixes parallel issues from recent C99 changes (#809) * Fixes parallel issues from recent C99 changes * Adds MPE FUNC --> __func__ changes missed in earlier PRs * Even more missed FUNC --> __func__ macros * Removes remaining H5_TIME_WITH_SYS_TIME cruft (#810) Mostly from CMake * Merges with develop * Committing clang-format changes * Normalization with develop * direct_chunk test and H5Dget_chunk_storage_size changes * Removes unused H5O call * Brings some dataspace changes from the combo branch merge Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Much normalization with develop (#701)Dana Robinson2021-05-281-7/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Brings CMake updates from develop * Brings reduction in pedantic casts from develop * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Formatted source * Bring over some VOL registration changes * VOL cleanup * H5VL_request_status_t substitutions * H5F.c cleanup * Minor API tweaks from develop * Moves H5G package init/teardown to H5Gint.c * H5G cleanup * H5M cleanup * H5SM cleanup * H5T cleanup * H5R cleanup * H5Lpublic.h cleanup * H5L cleanup * H5O cleanup * H5A, H5CS, and H5AC cleanup * Moved H5A init/teardown code to H5Aint.c * Moves H5D I/O functions to H5D.c * H5D cleanup * Misc minor cleanup * H5P close cleanup * H5Tpublic.h cleanup * Fixes err_compat test * H5PLpublic.h cleanup * Updates H5Ppublic.h * H5Fpublic.h updates * H5A.c cleanup * Brings over H5Aexists and related changes * Brings CMake shell testing changes from develop * Close callback changes * H5R and H5Tcommit normalization * err_compat test works now * H5O tweaks * Updates VOL registration code * Brings over H5VL_create_object * H5Tconv.c reformatting * H5T.c tweaks * Brings datatype and reference updates from develop * Brings VOL plugin loading changes from develop * Brings event sets from develop * Brings async functions over * Tools changes * Brings over many tools changes from develop * Brings VOL flags from develop * Fixes h5dump double/float tests * Updates h5repack tests * Brings h5diff test changes from develop * Last h5dump changes * Brings test changes from develop * Committing clang-format changes * Tidied h5_testing() * Brings chunk iteration code + misc from develop * Updates vds test * Enables external link parallel test * Brings updated property lists from develop * H5G changes from develop * H5MF cleanup * Brings vfd_swmr test back into CMake * Updates threadsafe test * Updates plist test * Brings recent changes from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Brings optional filters from developDana Robinson2021-05-071-0/+112
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* Misc normalization from developDana Robinson2021-05-071-2/+2
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* Brings H5CX_pop() changes from developDana Robinson2021-04-081-54/+63
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* Updates license url and history docsDana Robinson2021-03-251-1/+1
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* Formats the source and updates the gcc warning pragmasDana Robinson2021-03-251-5504/+6872
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* Use H5_ATTR_NDEBUG_UNUSED instead of H5_ATTR_SANITY_CHECK.David Young2020-05-201-1/+1
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* Avoid allocating a chunk index for datasets with 0-sized dimensions, untilQuincey Koziol2020-05-201-19/+212
| | | | the dataset is extended.
* Trim trailing whitespaceQuincey Koziol2020-05-201-6/+6
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* testpar/t_2Gio.c: Fix a typo that I think was introduced by aDavid Young2020-05-201-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2]. fortran/src/H5Pf.c: move conditional compilation controlled by H5_NO_DEPRECATED_SYMBOLS outside of a function for readability. fortran/src/H5match_types.c: put a variable's declaration under the same conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its use. For now, skip compilation of some unused debug dump routines in the JNI. While I'm in the JNI, delete a set-but-unused variable. src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS so that it's not declared but unused or vice versa. test/cache_common.h: add an #include in to get some symbols we need to avoid implicit declaration warnings. test/dsets.c: use a more conventional conditional-compilation syntax. test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized variables before use. test/vfd.c: pass the expected type of `void **` to posix_memalign(3) instead of `int **`. testpar/t_bigio.c: explicitly compare with 0 instead of using ! when "equal to 0?" is the question not "is false?" Repair some indentation while I'm here. testpar/testpar.h: repair misaligned line-continuation backslashes in a macro that probably should be a function so that we don't have to fiddle with the line continuation to begin with. tools/src/h5repack/h5repack_main.c: fix some compiler fussing about enums. tools/test/perform/pio_engine.c: the compiler fusses if you cast a function call returning double directly to off_t. It's ok if you cast a variable that's a double to off_t, however. Write and use a new function, sqrto(), to avoid the cast warnings.
* Revert "Revert "Moved -Wunsuffixed-float-constants to the developer warnings.""Dana Robinson2020-05-201-10/+10
| | | | This reverts commit 6486e06545bf637d46e18a787395542f4fca143a.
* Revert "Moved -Wunsuffixed-float-constants to the developer warnings."Dana Robinson2020-05-201-10/+10
| | | | This reverts commit 12bc75c6172ca7b64c33b17cf538a7629500cf2f.
* Moved -Wunsuffixed-float-constants to the developer warnings.Dana Robinson2020-05-201-10/+10
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* squash cast warning fixkmu2020-05-201-12/+12
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* fix unused related warningskmu2020-05-201-4/+4
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* Tidying from code review.Dana Robinson2020-05-201-6/+20
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* Fixed stack and frame size warnings. Not complete, but fixes most ofDana Robinson2020-05-201-204/+469
| | | | the easier cases.
* Squashed commit of the token_refactoring branch:Dana Robinson2020-05-201-23/+27
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* remove unnecessary check macrokmu2020-05-201-4/+4
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* fix intel compile warningskmu2020-05-201-4/+4
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* Revert "fix warnings from Intel compiler"kmu2020-05-201-4/+4
| | | | This reverts commit 8b9338ab57eec0cc8fa5a36c44d7b28e52e9a466.
* Revert "fix issues from previous PR comments"kmu2020-05-201-3/+3
| | | | This reverts commit d242a900f420b040e364f6c0976c01593e955db3.
* Revert "using a different MACRO"kmu2020-05-201-3/+3
| | | | This reverts commit fc61b7a9f3a38331809ebcb6247482943947cdb8.
* using a different MACROkmu2020-05-201-3/+3
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* fix issues from previous PR commentskmu2020-05-201-3/+3
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* fix warnings from Intel compilerkmu2020-05-201-4/+4
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* Small changes from the token_refactoring branch, to reduce the delta to developQuincey Koziol2020-05-201-7/+10
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* Remove constAllen Byrne2020-05-201-1/+1
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* Fix compile error - declaration after executable statementAllen Byrne2020-05-201-2/+3
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* Yanked -Wc++-compat from the flags used to build the C library in bothDana Robinson2020-05-201-12/+12
| | | | the Autotools and CMake.
* Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings ↵David Young2020-05-201-4/+5
| | | | level and fixing some code.' (commit 5c911d8baf3)"
* Quiet decleration-after-statement warnings.David Young2020-05-201-5/+4
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* Use HD prefix.David Young2020-05-201-8/+8
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* Merge all of my changes from merge-back-to-feature-vfd_swmr-attempt-1,David Young2019-12-091-597/+736
| | | | | | | | including the merge of `hdffv/hdf5/develop`, back to the branch that Vailin and I share. Now I need to put this branch on a fork with a less confusing name than vchoi_fork!
* I've changed `test/dsets` so that every time it needs to visit allDavid Young2019-10-171-32/+121
| | | | | | | | | | | | | | | | | cells in a matrix in an arbitrary order, first it chooses a random starting `offset` in [0, rows * columns - 1]. Then it chooses a random `increment` that's relatively prime to `rows * columns`. Then it visits every cell in `rows * columns` steps: for (i = 0; i < rows * columns; i++) { visit(cell[offset / columns][offset % columns]); offset = (increment + offset) % (rows * columns); } By moving the HDrandom() calls outside of the main loop and visiting each cell only once, this probably speeds things up quite a bit. It's also more resilient to a crummy random sequence. The new code visits cells in an order that's probably arbitrary enough for testing purposes.
* Develop normalization with vol_integration.Dana Robinson2018-09-191-51/+50
| | | | | Mostly peripheral things like the tools and wrappers, with just enough core library code to support that.
* Changes made based on feedback from pull request #1039.Vailin Choi2018-05-141-7/+7
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* Fix for HDFFV-10180 Performance issues with H5Oget_info.Vailin Choi2018-04-241-7/+7
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* Cleanup API context function usage.Quincey Koziol2018-03-191-0/+12
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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-136/+432
|\ | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| * Improving testsBinh-Minh Ribler2018-02-171-4/+4
| | | | | | | | | | | | | | | | | | | | | | | | Description: - Added test for version bounds with nested datatypes - Added script for additional version bound test in h5repack - Cleaned up tests for consistency - Removed extra included header files Platforms tested: Linux/64 (jelly) Linux/64 (moohan) Darwin (osx1010test)
| * More includes cleanupAllen Byrne2018-02-141-78/+77
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| * Additional testsBinh-Minh Ribler2018-02-131-61/+358
| | | | | | | | | | | | | | | | | | | | Description: - Revised and add more variety to version bound tests per review - Revised gen_bounds.c per review Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* | Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-2/+4
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* Correct linkage of filters and other libsAllen Byrne2017-11-161-1/+1
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* HDFFV-10297 update calls to H5Zfilter_availAllen Byrne2017-10-091-1499/+1380
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* Fix for HDFFV-10217 infinite loop in H5VM_power2up().Vailin Choi2017-07-101-2/+95
| | | | | | The function H5VM_power2up() returns the next power of 2 for n. When n exceeds 2^63, it overflows and becomes 0 causing the infinite looping. The fix ensures that the function checks for n >= 2^63 and returns 0.
* Merge branch 'develop' into windows_openDana Robinson2017-05-311-2/+117
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