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* Source formattedAllen Byrne2020-10-011-5527/+6784
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* Sync with developDana Robinson2020-08-011-216/+495
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* Avoid allocating a chunk index for datasets with 0-sized dimensions, untilQuincey Koziol2020-05-041-9/+202
| | | | the dataset is extended.
* Squashed commit of the following:David Young2020-01-311-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | commit ff7a9a34de2fcd78f5d32a1532f3d0e224b20d94 Author: Kimmy Mu <kmu@hdfgroup.org> Date: Wed Jan 29 14:12:18 2020 -0600 Merge pull request #2324 in HDFFV/hdf5 from ~KMU/hdf5:hdf5_1_12 to hdf5_1_12 * commit '781fa57f6ee816e037dd12fff02d37ff7ec9c2b1': pick up missing piece from merge Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop remove redundent definition Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop Merge pull request #2315 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop missing prototype warning prototype issue Merge pull request #2306 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop Merge pull request #2300 in HDFFV/hdf5 from ~KMU/hdf5:squashed_cast to develop Merge pull request #2291 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/uninitialized to develop Merge pull request #2295 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/float to develop Merge pull request #2292 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/prototype to develop Merge pull request #2094 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/unused to develop commit 9f3d808c05d2a3b308f32c958c6671fcac0a432c Author: David Young <dyoung@hdfgroup.org> Date: Wed Jan 29 11:43:55 2020 -0600 testpar/t_2Gio.c: Fix a typo that I think was introduced by a previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2]. fortran/src/H5Pf.c: move conditional compilation controlled by H5_NO_DEPRECATED_SYMBOLS outside of a function for readability. fortran/src/H5match_types.c: put a variable's declaration under the same conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its use. For now, skip compilation of some unused debug dump routines in the JNI. While I'm in the JNI, delete a set-but-unused variable. src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS so that it's not declared but unused or vice versa. test/cache_common.h: add an #include in to get some symbols we need to avoid implicit declaration warnings. test/dsets.c: use a more conventional conditional-compilation syntax. test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized variables before use. test/vfd.c: pass the expected type of `void **` to posix_memalign(3) instead of `int **`. testpar/t_bigio.c: explicitly compare with 0 instead of using ! when "equal to 0?" is the question not "is false?" Repair some indentation while I'm here. testpar/testpar.h: repair misaligned line-continuation backslashes in a macro that probably should be a function so that we don't have to fiddle with the line continuation to begin with. tools/src/h5repack/h5repack_main.c: fix some compiler fussing about enums. tools/test/perform/pio_engine.c: the compiler fusses if you cast a function call returning double directly to off_t. It's ok if you cast a variable that's a double to off_t, however. Write and use a new function, sqrto(), to avoid the cast warnings. commit 43a4b80b21c0329fbc1f9a0e2854795189f0bb50 Author: David Young <dyoung@hdfgroup.org> Date: Wed Jan 29 10:47:30 2020 -0600 Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required. Reduce gratuitous casts---e.g., (size_t)1. Use the right format string for a pointer. In the H5C sanity checks, change a "size increase" variable from ssize_t (too narrow) to int64_t (wide enough). Parenthesize every appearance of `storage` in the macro `H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an expression like &sc and it works properly. Disallow re-assignment of the `dset` parameter to H5D__chunk_init() because it helped assure me that it's safe to replace the repeating expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout. Replace lengthy expressions such as `&dset->shared->layout.storage.u.chunk` with `sc` throughout several functions in H5Dchunk.c ISTR that the compiler warned that `sc` was declared but unused in a couple of functions, and then I found that `sc` could be used in many places. Maybe the disused `sc` appeared because a bunch of code was copied and pasted, I don't know. Anyway, it's a lot tighter code now that I use `sc`. In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete() I actually expand `sc` and another temporary variable, `pline`, because they're used only in !defined(NDEBUG) code. This squashes unused-variable warnings in the defined(NDEBUG) configuration. Don't drop the `volatile` qualification with a cast in tools/src/h5import/h5import.c. commit 035bfa0769a4012881fc659b673bacf44d146537 Author: David Young <dyoung@hdfgroup.org> Date: Tue Jan 28 20:35:28 2020 -0600 Reduce differences between my -Werror branch and `develop`: Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC shadowed declaration warnings about index(3). Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
* Merge pull request #2300 in HDFFV/hdf5 from ~KMU/hdf5:squashed_cast to developKimmy Mu2020-01-281-12/+12
| | | | | | * commit 'af5c33afabdae2e39bb45eb1b3e9c8366da01145': remove unnecessary stuff squash cast warning fix
* Merge pull request #2094 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/unused to developKimmy Mu2020-01-281-4/+4
| | | | | | | | | | | * commit '145ef3ceee20c28a443bd11507c58858bea3f889': more cleanup change it back pick up missing piece fix unused related warnings removed unused parameter more fix and address comments remove unsed var,function,macro, etc
* Merge pull request #2238 in HDFFV/hdf5 from ~KMU/hdf5:hdf5_1_12 to hdf5_1_12Kimmy Mu2020-01-241-4/+4
|\ | | | | | | | | | | | | * commit '48cc850199901c5b67a40183262f4ead975b884f': fix test assert fail error Merge pull request #2071 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings to develop Merge pull request #2234 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings to develop
| * Merge pull request #2071 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings ↵Kimmy Mu2020-01-081-4/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '0a2bb11b248df6841daabca3970df5d8504adfc7': address problems from comments fix and address comments change according to previous comments add missing piece remove unnecessary check macro fix intel compile warnings Revert "fix warnings from Intel compiler" Revert "fix warnings and some text alignment" Revert "let hdf5 pick up the right compiler in Intel environment" Revert "fix issues from previous PR comments" Revert "using a different MACRO" using a different MACRO fix issues from previous PR comments let hdf5 pick up the right compiler in Intel environment fix warnings and some text alignment fix warnings from Intel compiler
* | Squashed commit of the token_refactoring branch:Dana Robinson2020-01-191-23/+27
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* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12)Allen Byrne2020-01-071-7/+10
|\ \ | |/ | | | | | | | | | | | | | | | | | | * commit '7116d82f6b685261b5b4e64fada1a0a031cd7341': Remove mismerged code Cherry pick of 0225e6d5969 Cleanups from PR reviews Remove unnecessary H5CX call Refactor H5Dvlen_get_buf_size to use optional dataset operation, with generic fallback for VOL connectors that don't implement operation Refactor all the 'H5VL_*_optional' callbacks to move the type of operation out of the va_list, so it's at least possible for another connector to know what the operation is and decide whether to implement it or not. Update h5debug to retrieve file pointer through VOL framework
| * Cherry pick of 0225e6d5969Quincey Koziol2020-01-041-7/+10
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* | Correct compile statement orderAllen Byrne2019-12-201-2/+3
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* Use HD prefix.David Young2019-12-191-8/+8
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* Fix HDFFV-10937: use a more reliable (and probably faster) scheme forDavid Young2019-12-191-32/+121
| | | | visiting all elements of a matrix in an arbitrary order.
* Yanked -Wc++-compat from the flags used to build the C library in bothDana Robinson2019-12-161-12/+12
| | | | the Autotools and CMake.
* Revert "Merge branch 'hdf5_1_12' of ↵Jerome Soumagne2019-12-091-120/+32
| | | | | | | https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into hdf5_1_12" This reverts commit 9f9336a5bd541752f472bab4c93da8de89f862cd, reversing changes made to 437a1919e7ba60fe75a33a466d264183a0255319.
* Merged HDFFV-10929_2GB_testing to hdf5_1_12Richard Warren2019-12-061-32/+120
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* Make wrappers, tests and tools use H5Treclaim() instead of H5Dvlen_reclaim()Jerome Soumagne2019-10-081-2/+2
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* Fixed some exit calls.Dana Robinson2019-09-071-4/+3
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* Merge reconciliation and VFD test fixesAllen Byrne2019-08-041-259/+260
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* Merge cleanup mostly whitespaceAllen Byrne2019-07-301-120/+125
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* Add support for GCC 7.x warnings, update warnhist script to account for them,Quincey Koziol2019-06-211-6/+10
| | | | clean up warnings.
* Set V112 as the latest format and extend the arrays of version bounds.Vailin Choi2019-04-041-1/+1
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* Used the H5_INC_ENUM macro to squash enum value increment warnings.Dana Robinson2019-03-211-6/+6
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* Remove "bad" statements at end of TEST_ERROR.Jacob Smith2019-01-041-24/+17
| | | | Formerly arguments to FAIL_PUTS_ERROR
* Add semicolon at end of TEST_ERROR() invocation for consistency.Jacob Smith2019-01-041-1/+1
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* Change FAIL_PUTS_ERROR to TEST_ERROR.Jacob Smith2019-01-041-17/+17
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* Fix mistake with H5E_BEGIN_TRY {...} H5E_END_TRY block containing ↵Jacob Smith2018-12-201-15/+26
| | | | | | ERROR-raising macros. Formatting tweaks.
* Formatting adjustments.Jacob Smith2018-12-181-226/+217
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* Merge branch 'develop' into dset_ohdr_minimizeJacob Smith2018-12-181-1/+8
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* | Re-format test/ohdr_mindset.cJacob Smith2018-12-141-1/+1
| | | | | | | | Fix a few transcription errors in other test files.
* | Reformat to be more consistent with existing code.Jacob Smith2018-12-131-6/+2
| | | | | | | | Fix a few typos.
* | Merge branch 'develop' into dset_ohdr_minimizeJacob Smith2018-12-121-54/+66
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| * Squashed commit of private branch changes to support stackable VOL plugins.Quincey Koziol2018-10-251-1/+14
| | | | | | | | modified: test/dsets.c
| * VOL FEATUREDana Robinson2018-10-101-2/+2
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| * Develop normalization with vol_integration.Dana Robinson2018-09-191-51/+50
| | | | | | | | | | Mostly peripheral things like the tools and wrappers, with just enough core library code to support that.
* | Incorporate minimized dset ohdr tests into extant suite.Jacob Smith2018-11-191-8/+18
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* | Stash work on object header reduction code and tests.Jacob Smith2018-09-111-0/+109
|/ | | | CMake stuff is not verified.
* Changes made based on feedback from pull request #1039.Vailin Choi2018-05-141-7/+7
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* Fix for HDFFV-10180 Performance issues with H5Oget_info.Vailin Choi2018-04-241-7/+7
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* Cleanup API context function usage.Quincey Koziol2018-03-191-0/+12
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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-136/+432
|\ | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| * Improving testsBinh-Minh Ribler2018-02-171-4/+4
| | | | | | | | | | | | | | | | | | | | | | | | Description: - Added test for version bounds with nested datatypes - Added script for additional version bound test in h5repack - Cleaned up tests for consistency - Removed extra included header files Platforms tested: Linux/64 (jelly) Linux/64 (moohan) Darwin (osx1010test)
| * More includes cleanupAllen Byrne2018-02-141-78/+77
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| * Additional testsBinh-Minh Ribler2018-02-131-61/+358
| | | | | | | | | | | | | | | | | | | | Description: - Revised and add more variety to version bound tests per review - Revised gen_bounds.c per review Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* | Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-2/+4
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* Correct linkage of filters and other libsAllen Byrne2017-11-161-1/+1
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* HDFFV-10297 update calls to H5Zfilter_availAllen Byrne2017-10-091-1499/+1380
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* Fix for HDFFV-10217 infinite loop in H5VM_power2up().Vailin Choi2017-07-101-2/+95
| | | | | | The function H5VM_power2up() returns the next power of 2 for n. When n exceeds 2^63, it overflows and becomes 0 causing the infinite looping. The fix ensures that the function checks for n >= 2^63 and returns 0.
* Merge branch 'develop' into windows_openDana Robinson2017-05-311-2/+117
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