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Removes redundant C library headers from hl library
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Description:
Applied the typo fixes from user's report.
The previous pull request couldn't be merged because it was too old,
and it was too complicated for me to resolve conflicts.
Platform tested:
Linux/64 (jelly) - very minor
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hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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followup commit for the test of the conversion function H5T__conv_enum_numeric (numeric type means integer or floating number).
Tested on tejeda - failed on tejeda and ostrich in the daily test.
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Clean up a few warnings and minor code issues during review of enum ->
int/float conversion changes.
Tested on:
Mac OSX/64 10.8.2 (amazon) w/debug
(too minor to require h5committest)
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(numeric type means integer or floating number) and the C test for it. This is the work for Chicago.
Tested on jam, koala, and ostrich.
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pending a careful evaluation of enum conversion behavior.
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When no conversion is involved in reading or writing the
data, overflowing values are retained. When conversion happens, the values become -1. The conversion function puts -1
when overflow happens. I added two new dataset transfer property to control whether to fill 0xff in the destination
data or convert to the destination data when overflow happens. The two new functions are H5Pset(get)_enum_conv_overflow. I also added test cases in enum.c and dtypes.c.
Tested on jam, koala, and heiwa.
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Description:
Added internal tesitng routines to traverse a file and verify that symbol table
information is *always* cached, whenever possible. Added this check to the end
of many tests to check all the test files, right before the call to h5_cleanup.
Tested: jam, amani, heiwa (h5committest)
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unresolved issues - r19441 and 19467.
Bug 1707 is that H5Eset_auto causes a seg fault when an application uses -DH5_USE_16_API with
the 1.8 library to compile.
I created a branch off the trunk called set_auto to continue working on the problem.
Tested on jam - backing out, simple.
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application uses -DH5_USE_16_API with the 1.8 library to compile. The cause is from the mismatch of H5Eprint1 and H5Eprint2 set
through H5Eset_auto. I changed the union in the structure H5E_auto_t. Another change is to
make H5Eget_auto fail if H5Eset_auto is called to set the printing function. I'll write a
document for it.
Tested on heiwa, jam, and amani.
The property change in configure.in, config, and Makefile.am came from the merge of the 1.8
library change.
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Whack a few more memory errors exposed by valgrind.
Make the debugging dump output a little bit prettier.
Tested on:
Mac OS X/32 10.6.4 (amazon) w/debug
(h5committest forthcoming)
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Remove another call to H5E_clear_stack() from within the library.
Clean up lots of compiler warnings.
Tested on:
Mac OS X/32 10.5.6 (amazon)
(followup on other platforms forthcoming)
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Correct a minor error in file free space allocation which was affecting
the 'multi' VFD and preventing some tests from fully working with it.
Wholesale revisitation of all the places where tests were disabled
with various VFDs and remove or correct all these so that _only_ the tests
which _really_ can't work with particular VFDs are skipped during a
'make check-vfd' test.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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Remove trailing whitespace from C/C++ source files, with the following
script:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Tested on:
Mac OS X/32 10.5.5 (amazon)
No need for h5committest, just whitespace changes...
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Add H5Dcreate to API versioned routines, replacing internal usage with
H5Dcreate2
Fix thread-safe error stack initialization for API versioned error
stack printing routines.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
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Add API versioning to H5Tcommit()
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
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Pursue calls to H5Gcreate() relentlessly and ruthlessly exterminate
them, leaving only a few tame specimens in text files and comments. ;-)
Tested on:
Mac OS X/32 10.4.10 (amazon)
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
Solaris/32 5.10 (linew)
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Rename new error handling API routines from H5E<foo>_stack() to
H5E<foo>2().
Tested on:
Mac OS X/32 10.4.9 (amazon)
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
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Check in changes from Elena and I to get pgcc compiler working again.
Primarily (all?) changes to move from using 'hsize_t' as array index to using
something else ('size_t') mostly.
Tested on:
Linux/32 2.4 kagiso w/pgcc
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copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
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"make check-vfd" will now run all tests in the test directory with different
file drivers (at least, all of those tests that use the testing framework's
FAPL). Tests that fail will be skipped.
This is not a perfect fix, but is better than nothing.
Along with this change, check-vfd should be added to the Daily Tests.
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Clean up some compiler warnings.
Tested on:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
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Code cleanup
Description:
Trim trailing whitespace in Makefile.am and C/C++ source files to make
diffing changes easier.
Platforms tested:
None necessary, whitespace only change
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Description: Test some data type functions that are and aren't supposed to work
with some data types.
Platforms tested: h5committest and fuss.
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Code cleanup
Description:
Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.
Solution:
Ran this script in each directory:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
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Description: Restore 6 old error API functions back to the library to be backward
compatible with v1.6. They are H5Epush, H5Eprint, H5Ewalk, H5Eclear, H5Eset_auto,
H5Eget_auto. These functions do not have error stack as parameter.
Solution: Internally, these functions use default error stack.
Platforms tested: h5committest and fuss.
Misc. update: RELEASE.txt
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removed specific code warrior debugging information
Platforms tested:
code warrior
Misc. update:
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Update
Description:
Updated the Copyright statement
Platforms tested:
Linux (This change is only in the comments, so I just check that the
modules still compile)
Misc. update:
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Code cleanup
Description:
Clean up a few warnings which were showing up with --enable-production
turned on.
Platforms tested:
FreeBSD 4.6 (sleipnir) serial & parallel
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Code cleanup
Description:
Clean up some compiler warnings...
Platforms tested:
FreeBSD 4.5 (sleipnir)
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Purpose:
Bug #774 fix
Description:
Added a test for the H5Tenum_nameof and H5Tenum_valueof functions.
Values that do not exists in the enumeration type are supplied to
the functions; functions should fail instead of succeeding.
Platforms tested:
Solaris 2.7 and Linux 2.2.18
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Update
Description:
Changed includes of the form:
#include <hdf5_file.h>
to
#include "hdf5_file.h"
so that gcc can pick them up easier without including the system
header files since we don't care about them.
Platforms tested:
Linux
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Portability tweaks
Description:
Certain features (signal for FPE, some assertions, etc) used in testing
are not available in certain non-UNIX platforms.
Solution:
Ifdef'd out the test code on the platforms which don't have that support.
Platforms tested:
FreeBSD 4.3 (hawkwind)
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Clean up warnings
Description:
The "FAILED" macro is defined by Windows and is causing warnings and
potential errors when compiled on that platform.
Solution:
Change our macro from FAILED to H5_FAILED.
Platforms tested:
FreeBSD 4.2 (hawkwind)
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The "FILENAME" declared extern in h5test.h is not always used.
It was used in h5_cleanup to remove temporary files created
during tests. Not all tests codes have used this routine.
Indeed, quite a few of test programs do "#define FILENAME ".
Also, h5_cleanup needs to work in tandem with h5_fixname.
h5_fixname accepts an explicite base_name argument instead
of using the global variable FILENAME. That is cleaner.
Solution:
Added char *base_name[] as a new argument to h5_cleanup, in
the same style as h5_fixname. Removed "extern char *FILENAME..."
from use. Also, undo some unnecessary declaration of "char *FILENAME"
from some tests which don't use it at all (yet).
Platforms tested:
modi4-64(irix64), arabica(solari2.7), eirene(linux)
(arabica could not launch tests automatically. I had to hack
in LD_LIBRARY_PATH to make them run.)
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working now.
Some other memory leaks in the tests fixed.
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----------------------
./config/irix64
The old (-32) compiler is now supported by setting envrionment
CC='cc -32'. The -64 compiler is the default or you can set
CC='cc -64'.
./src/H5A.c
./src/H5D.c
./src/H5F.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5G.c
./src/H5I.c
./src/H5Ocomp.c
./src/H5P.c
./src/H5R.c
./src/H5RA.c
./src/H5T.c
./src/H5Tbit.c
./src/H5Tconv.c
./src/H5Z.c
./src/H5detect.c
./test/big.c
./test/cmpd_dset.c
./test/dsets.c
./test/dtypes.c
./test/enum.c
./test/mtime.c
./test/ohdr.c
./tools/h5ls.c
Fixed lots of warnings on Irix64. Mailed a few remaining
warnings in H5S to Quincey and a few in the dumper to
Ruey-Hsia.
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----------------------
./configure.in
./acconfig.h
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
./src/H5public.h
./src/H5Omtime.c
Check for <stddef.h>
Checks for `__tm_gmtoff' in `struct tm' because old versions
of GNU libc are different than recent versions. This fixes the
failing mtime test.
./bin/config.guess
./config/freebsd2.2.7 [REMOVED]
./config/freebsd [ADDED]
Changed the name so it works with all versions of FreeBSD.
./src/H5.c
Moved H5F after H5T and H5G in H5_term_library() to satisfy
dependencies.
./src/H5G.c
Fixed a bug that caused H5Gcreate() to fail if the group name
had trailing slashes.
./src/H5Gpublic.h
Changed `group_name' to `name' in a prototype.
./src/Makefile.in
Dynamic library on Linux, but needs for work to be generally
useful.
./src/H5HG.c
./src/H5HGprivate.h
Fixed alignment problems when using old GCC compilers (like
the one shipped with RedHad Linux).
./tools/h5ls.c
Fixed a bug where the contents of the root group could be
listed twice if there was a link back to the root
group. Similarly for groups that are mentioned on the command
line.
Fixed a bug where unknown types were printed with a random
type class number.
./src/H5T.c
./src/H5Tconv.c
./src/H5Tprivate.h
Fixed O(log N) conversion bugs.
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