| Commit message (Collapse) | Author | Age | Files | Lines |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
* Normalization with develop
* Removes checks and work-arounds for strtoll and strtoull (#769)
* Removes checks for (v)snprintf, which are C99 (#772)
* Update missing release note info. (#776)
* Replaces the H5_OVERRIDE macro with override (#773)
The macro is no longer necessary now that we require C++11.
* Cleans up some POSIX header bits in H5private.h (#783)
* Removes outdated checks for ways inline might be defined (#781)
These are obsolete now that we require C99.
* Removes checks for system(), which is C89/90 (#782)
* Removes C++ dependency on H5private.h (#774)
* Removes C++ dependency on H5private.h
Most C API calls have been removed, aside from a few uses of free,
where we just dropped the 'HD'. A couple of H5_ATTR_UNUSED macros
were also replaced with (void) statements.
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Further simplifies Autotools type size checks (#789)
Also fixes an issue where clock_gettime and difftime are not detected
due to earlier simplifications of this code.
* Release Note (#784)
* Normalization of CMake H5pubconf.h with Autotools (#791)
Mostly just moving things around and changing the comments to keep the
delta small. The only symbol change is that for curl/curl.h which I
changed to H5_HAVE_CURL_CURL_H to match the Autotools. This symbol
is not used in the library and is just an artifact of the checks.
* Fix tools test (#794)
* Removes ancient Autotools cruft (#790)
* Reorganization of C and POSIX headers in H5public.h & H5private.h (#793)
* Reorganization of C and POSIX headers in H5public.h & H5private.h
Consolidated and removed duplicates
* It turns out Windows has sys/types.h
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Removes checks for signal and set/longjmp, which are C89 (#798)
Also removes checks for setjmp.h and stddef.h
* Assume frexpl/f and fabsl/f, which are C99 (#799)
* Assume the library has C99 types in C++ type code (#806)
* Assume the library has C99 types in C++ type code
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Removes obsolete equivalents of C99's __func__ (#800)
* Cleans up POSIX/C bits in H5private.h (#804)
* Cleans up POSIX/C bits in H5private.h
* Assume difftime exists (C89)
* Reorg AC_CHECK_HEADERS so headers are in alphabetical order
* Split off networking-related AC_CHECK_HEADERS
* Remove unused UNAME_CYGWIN from configure.ac
* Remove checks for unused sys/timeb.h
* Tidying pass over H5private.h HD prefix macros
* Tidy H5win32defs.h
* Add HD prefix to various scanf calls
* Committing clang-format changes
* Fixes to the alarm(2) code used in the tests to make Windows happy
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Brings the tools getopt(3) replacement into the main library (#803)
* Moves get_option from the tools library to the C library
* Adds H5 prefix to get_option call and variables
* Renames the H5_get_option long options struct and enum
* Removes type guesses when C99 types are missing (#807)
* Assume C99 types exist in H5detect.c (#808)
* Fixes parallel issues from recent C99 changes
* Adds MPE FUNC --> __func__ changes missed in earlier PRs
* Fix typo
* Fixes parallel issues from recent C99 changes (#809)
* Fixes parallel issues from recent C99 changes
* Adds MPE FUNC --> __func__ changes missed in earlier PRs
* Even more missed FUNC --> __func__ macros
* Removes remaining H5_TIME_WITH_SYS_TIME cruft (#810)
Mostly from CMake
* Merges with develop
* Committing clang-format changes
* Normalization with develop
* direct_chunk test and H5Dget_chunk_storage_size changes
* Removes unused H5O call
* Brings some dataspace changes from the combo branch merge
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
|
| |
|
| |
|
| |
|
| |
|
| |
|
|
|
|
| |
the Autotools and CMake.
|
|
|
|
| |
a do-while wrapper.
|
|
|
|
|
|
|
|
| |
including the merge of `hdffv/hdf5/develop`, back to the branch that Vailin and
I share.
Now I need to put this branch on a fork with a less confusing name than
vchoi_fork!
|
| |
|
| |
|
| |
|
|
|
|
|
|
|
|
|
|
| |
hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
|
|
|
|
|
|
|
|
| |
metadata optimizations.
- rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library
tested on bb-8 with parallel and serial.
|
|
|
|
|
|
| |
(H5_DEBUG_BUILD)
tested on bb-8 with Serial and Parallel, debug and production builds.
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring r28708 from revise_chunks branch:
Fix earray, farray and btree2 use of incorrect file pointer when two files
are opened and used to access the data structure. Misc. minor code cleanups
as well.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
h5committest forthcoming
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.
This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.
Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)
Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/64 3.10.x (kituo) w/serial & parallel
Linux/64 2.6.x (ostrich) w/serial
|
|
|
|
|
|
|
|
|
|
|
| |
gcc 4.9.2 was used to create the warning list
- implicit casts
- shadowed variables
- various enum issues
- other minor fixes (comments, unused macros, etc.)
Tested on: h5committest
|
|
|
|
|
|
|
|
| |
* H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN
tested with h5committest.
|
|
|
|
|
|
|
|
|
|
|
|
| |
project for
view objects. The addition of view objects in the fastforward project
is expected to be brough into the trunk sometimes in the future, which
is why we need to make this change.
Tested Manually on Jam and Ostrich.
Tested with h5commitest - Koala with intel compilers failed, but nothing had to do with those changes.
error on Koala: error while loading shared libraries: libirng.so
|
|
|
|
|
|
|
|
|
| |
Description:
Added internal tesitng routines to traverse a file and verify that symbol table
information is *always* cached, whenever possible. Added this check to the end
of many tests to check all the test files, right before the call to h5_cleanup.
Tested: jam, amani, heiwa (h5committest)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Commit metadata tagging framework.
Description:
This check-in contains a new framework whose goal is to apply
a tag value to each new entry in the metadata cache as it is created.
This tag value is such that it relates each piece of metadata to the
HDF5 object that it belongs to (dataset, group, et cetera).
This changeset includes the framework that applies the tags as
well as a suite of tests to verify correct tag application, though does
not yet make use of the tag values to flush/evict individual objects.
Please refer to the "flush/evict individual objects" RFC for further
discussion of these changes.
Tested:
jam, amani, linew (h5committest)
liberty, abe, blue print
|
|
|
|
|
|
|
|
|
| |
Trim trailing whitespace from source code files with this command:
find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//'
Tested on:
None - eyeballed only
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Correct & simplify client callback context for extensible and fixed
array data structures.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.2 (amazon) in debug mode
Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
|
|
Bring most of Vailin's changes to the fixed array data structure back
to the trunk, including new regression test for data structure.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.5.8 (amazon) in debug mode
Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
|