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* [svn-r7308] Purpose:Quincey Koziol2003-08-081-3/+5
| | | | | | | | | | | | Code cleanup Description: Made automatic error printing routine, h5_errors(), static. Passed along error stack in h5_errors() Platforms tested: h5committested
* [svn-r7265] *** empty log message ***Raymond Lu2003-07-261-2/+2
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* [svn-r7181] Purpose:Quincey Koziol2003-07-071-13/+0
| | | | | | | | | | | Version update Description: Removed 1.4 compatibility code in the library. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r7109] Purpose:Quincey Koziol2003-06-261-0/+2
| | | | | | | | | | | Code cleanup Description: Clean up varios compiler warnings flagged by SGI compiler and gcc 3.3 Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r7055] Purpose:Quincey Koziol2003-06-181-0/+29
| | | | | | | | | | | | Refactored code Description: Moved duplicated "get_file_size()" function from a couple of tests into a central location. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r6901] Purpose:Albert Cheng2003-05-191-2/+8
| | | | | | | | | | | | | | | | Small feature. Description: Change the wording for the use of HDF5_PARAPREFIX from Remark to hint. Also made process 0 be the only one printing the hint rather all processes duplicating the same hints. Platforms tested: Copper, both serial and parallel. Did not do h5commit test since this is very localized and the above tests covered both cases already. Misc. update:
* [svn-r6834] Purpose:Albert Cheng2003-05-081-3/+16
| | | | | | | | | | | | | | | | | Feature change Description: HDF5_PARAPREFIX has been default to various values like /tmp, /var/tmp, ... None of these solve all problems and all of them created new problems. For LLNL GPFS, '.' is more appropriate since they can do the build right inside gpfs. Same for NCSA Copper. The special setting for Janus is still retained since that is a one of a kind machine and the uses could use all the help. Platforms tested: h5committested (using sol instead of arabica) plus eirene(pp). Misc. update:
* [svn-r6538] Purpose:Bill Wendling2003-03-311-3/+14
| | | | | | | | | | | | | Update Description: Updated the Copyright statement Platforms tested: Linux (This change is only in the comments, so I just check that the modules still compile) Misc. update:
* [svn-r6143] *** empty log message ***Quincey Koziol2002-12-021-1/+1
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* [svn-r5991] Purpose:Quincey Koziol2002-10-141-1/+8
| | | | | | | | | | | | | New feature Description: If backing store for a core VFD file is turned on, remove the file created. Platforms tested: FreeBSD 4.6 (sleipnir) w and w/o parallel Linux 2.2.x (eirene) w/FORTRAN & C++ Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/FORTRAN & parallel
* [svn-r5895] Purpose:Quincey Koziol2002-08-271-1/+1
| | | | | | | | | | | | Code cleanup/More tests Description: Cleaned up some compiler warnings and wrote additional tests for space allocation and storage size routines. Platforms tested: FreeBSD 4.6 (sleipnir) w/serial & parallel. Will be testing on IRIX64 6.5 (modi4) in serial & parallel shortly.
* [svn-r5674] Purpose:Quincey Koziol2002-06-191-2/+2
| | | | | | | | | | Code cleanup Description: Removed more compiler warnings, etc. Platforms tested: Linux 2.2.x (eirene) w/parallel
* [svn-r5491] Purpose:Bill Wendling2002-05-311-23/+74
| | | | | | | | | | | Feature Enhancement Description: We can now set the MPI_Info object to more than one key/value pairing. By setting the HDF5_MPI_INFO environment variable to a semicolon separated list of "key=value" pairs, we can set the MPI_Info variable to them. Platforms tested: Linux
* [svn-r5481] Description:Albert Cheng2002-05-291-4/+4
| | | | | | | Renamed pio_info_g as h5_io_info_g to better reflect its general purpose. Platforms tested: eirene(pp)
* [svn-r5446] Purpose:Albert Cheng2002-05-211-1/+82
| | | | | | | | | Feature Description: moved the routines of setting up and dumping MPI-info object to test library so that it is avaiable for all tests too. Platforms tested: modi4(pp), eirene (serial)
* [svn-r5444] Purpose:Quincey Koziol2002-05-201-2/+2
| | | | | | | | | | Code cleanup Description: Clean up warnings on IRIX64 6.5 (modi4) Platforms tested: IRIX64 6.5 (modi4)
* [svn-r5245] MuQun Yang2002-04-241-0/+31
| | | | | | | | | | | | | | Purpose: windows support of socket function Description: gethostname is treated as socket function in windows and it is defined at winsock.h. for every windows socket function to be called, it must start with WSAStartup and end with WSACleanup Solution: Add WSAstartup and WSACleanup with WIN32 macro. Platforms tested: windows 2000, confirmed at linux 2.2.18
* [svn-r5219] Purpose:Quincey Koziol2002-04-221-1/+1
| | | | | | | | | | Code cleanup Description: Clean up warnings from gcc 3.1 Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5218] Purpose:Albert Cheng2002-04-221-0/+44
| | | | | | | | | | New feature Description: Added h5_show_hostname to display the hostname of the host in which the process runs. It can help identify location of process in multiple processes or batch launching environments. Platforms tested: Eirene (pp)
* [svn-r5205] Purpose:Albert Cheng2002-04-191-1/+1
| | | | | | | | | | | | | | Code cleanup Description: Platform dependent code related to the struct stat and fstat calls polluted source codes. Hard to maintain. Solution: Platform dependent code are moved to H5private.h and then internal code can #include H5private.h. Repeat those macro definition for the stdio and multi drivers since they area examples for writing a virtual file driver. They must not use any internal code. Platforms tested: eirene (parallel), modi4 (serial including gass driver.)
* [svn-r4978] Purpose:Quincey Koziol2002-02-171-1/+1
| | | | | | | | Code cleanup Description: Cleanup compiler warnings found by the SGI compiler and gcc 3.0 Platforms tested: FreeBSD 4.5 w/gcc 3.0 (hack) && IRIX64 (modi4)
* [svn-r4673] Purpose:Quincey Koziol2001-12-051-0/+13
| | | | | | | | | | | | | | Backward Compatibility Fix Description: H5Pset_fapl_log's parameters have changed from a simple "verbosity" level to bit-masked flags to enable various behaviors. Solution: Added in v1.4 compat stuff, on the unlikely chance that others are actually using this code in some production way. There are no C++ or FORTRAN wrappers for this call. Platforms tested: FreeBSD 4.4 (hawkwind)
* [svn-r4665] Purpose:Quincey Koziol2001-12-031-3/+3
| | | | | | | | | Code cleanup Description: Changed the logging file driver to use bitmasked flags for features to enable, instead of using a verbosity level. Platforms tested: Solaris 2.6 (baldric)
* [svn-r4643] Purpose:Quincey Koziol2001-11-271-2/+2
| | | | | | | | | | | | | | | | | | | | | | Code cleanup Description: Windows is generating hundreds of warnings from some of the practices in the library. Mostly, they are because size_t is 32-bit and hsize_t is 64-bit on Windows and we were carelessly casting the larger values down to the smaller ones without checking for overflow. Also, some other small code cleanups,etc. Solution: Re-worked some algorithms to eliminate the casts and also added more overflow checking for assignments and function parameters which needed casts. Kent did most of the work, I just went over his changes and fit them into the the library code a bit better. Platforms tested: FreeBSD 4.4 (hawkwind)
* [svn-r4473] Purpose:Quincey Koziol2001-09-251-3/+3
| | | | | | | | | | | | | | | | | | | | | Code cleanup for better compatibility with C++ compilers Description: C++ compilers are choking on our C code, for various reasons: we used our UNUSED macro incorrectly when referring to pointer types we used various C++ keywords as variables, etc. we incremented enum's with the ++ operator. Solution: Changed variables, etc.to avoid C++ keywords (new, class, typename, typeid, template) Fixed usage of UNUSED macro from this: char UNUSED *c to this: char * UNUSED c Switched the enums from x++ to x=x+1 Platforms tested: FreeBSD 4.4 (hawkwind)
* [svn-r4312] Purpose:Quincey Koziol2001-08-061-98/+0
| | | | | | | | | Feature shift Description: Take out the v1.2.x compatibility stubs and put in the hooks for v1.4.x compatibility when needed. Platforms tested: FreeBSD 4.3 (hawkwind)
* [svn-r4069] Purpose:Quincey Koziol2001-06-221-6/+3
| | | | | | Code cleanup... Description: Took out Windows ifdef and switched back to just using HDmkdir
* [svn-r4047] MuQun Yang2001-06-211-2/+7
| | | | | | | | | | | Purpose: bug fix for windows Description: adding various windows macros Solution: see above Platforms tested: windows 2000, confirmed on linux.
* [svn-r4012] Purpose:Quincey Koziol2001-06-181-58/+60
| | | | | | | | Clean up compiler warnings. Description: Just code neatening mostly, some casts, etc. Platforms tested: FreeBSD 4.3 (hawkwind)
* [svn-r3944] Purpose:Bill Wendling2001-05-251-7/+6
| | | | | | | | | | Fixlet Description: Some variables weren't being assigned before being used. Solution: Initialized with '\0'. Platforms tested: Linux
* [svn-r3941] Purpose:Bill Wendling2001-05-251-49/+48
| | | | | | | | | | | | | | Small Fix Description: Don't delete the /tmp/${USER,LOGIN} directory when we're done with it. Also, only do the /tmp/${USER,LOGIN} if this is a parallel configured library. Solution: Removed the removal of the /tmp/${USER,LOGIN} directory and added checks to determine if we're in a parallel configured library before munging the filename... Platforms tested: Linux
* [svn-r3936] Purpose:Bill Wendling2001-05-221-49/+142
| | | | | | | | | | | | | | Feature Add Description: Added the feature (not a bug, a FEATURE!) that, if the person has the env variables USER or LOGIN set, then it will place the temporary files in the "/tmp/$USER" or "/tmp/$LOGIN" directory (in that order). This is only if the prefix the user gives is the default one "/tmp". After the tests are finished, it will remove the directory for the user. Platforms tested: Linux
* [svn-r3770] Purpose:Bill Wendling2001-04-031-1/+2
| | | | | | | | | | | | | | | | | Update Description: Changed includes of the form: #include <hdf5_file.h> to #include "hdf5_file.h" so that gcc can pick them up easier without including the system header files since we don't care about them. Platforms tested: Linux
* [svn-r3744] Purpose:Quincey Koziol2001-04-011-5/+1
| | | | | | | | | | | Code cleanup Description: Code had ifdef's instead of using standard macro wrappers for getpid() call. Solution: Took out ifdef's and changed to use standard H5getpid() macro. Platforms tested: FreeBSD 4.3 (hawkwind)
* [svn-r3326] Purpose:Quincey Koziol2001-01-251-1/+1
| | | | | | | | | | | Clean up warnings Description: The "FAILED" macro is defined by Windows and is causing warnings and potential errors when compiled on that platform. Solution: Change our macro from FAILED to H5_FAILED. Platforms tested: FreeBSD 4.2 (hawkwind)
* [svn-r3252] Purpose:Quincey Koziol2001-01-091-2/+33
| | | | | | | | | | | | | Code cleanup. Description: Fixed _lots_ (I mean _tons_) of warnings spit out by the gcc with the extra warnings. Including a few show-stoppers for compression on IRIX machines. Solution: Changed lots of variables' types to more sensible and consistent types, more range-checking, more variable typecasts, etc. Platforms tested: FreeBSD 4.2 (hawkwind), IRIX64-64 (modi4)
* [svn-r3242] MuQun Yang2001-01-041-0/+7
| | | | | | | | | | Purpose: bug fix for windows Description: in windows use _getpid instead of getpid Solution: Platforms tested: windows 2000
* [svn-r3005] Purpose:Quincey Koziol2000-11-271-0/+50
| | | | | | | | Backward compatibility code Description: Add in code to allow the library to emulate the v1.2 API and behavior. Platforms tested: FreeBSD 4.2 (hawkwind)
* [svn-r2875] Purpose:Quincey Koziol2000-11-131-1/+1
| | | | | | | | Code cleanup Description: Eliminated some warnings on O2K platform. Platforms tested: SGI O2K (modi4)
* [svn-r2650] Purpose:Albert Cheng2000-10-101-2/+2
| | | | | | | | | | | | Bug fix Description: The predefined HDF5_PARAPREFIX has a trailing slash. The parallel testfile names end up with two adjacent slashes that made some system unhappy. Solution: Removed the trailing slash. Platforms tested: Arabica (solaris 2.7).
* [svn-r2531] Description:Albert Cheng2000-09-101-7/+11
| | | | | | | | | | | | | | | | | | | The "FILENAME" declared extern in h5test.h is not always used. It was used in h5_cleanup to remove temporary files created during tests. Not all tests codes have used this routine. Indeed, quite a few of test programs do "#define FILENAME ". Also, h5_cleanup needs to work in tandem with h5_fixname. h5_fixname accepts an explicite base_name argument instead of using the global variable FILENAME. That is cleaner. Solution: Added char *base_name[] as a new argument to h5_cleanup, in the same style as h5_fixname. Removed "extern char *FILENAME..." from use. Also, undo some unnecessary declaration of "char *FILENAME" from some tests which don't use it at all (yet). Platforms tested: modi4-64(irix64), arabica(solari2.7), eirene(linux) (arabica could not launch tests automatically. I had to hack in LD_LIBRARY_PATH to make them run.)
* [svn-r2468] Changed type of variable to long since that's what it should ↵Bill Wendling2000-08-041-7/+8
| | | | | | hold after a call to the strtol() function.
* [svn-r2411] Added support for log VFL driver.Robb Matzke2000-06-231-0/+7
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* [svn-r1946] Added a the PARA-Prefix for parallel test files for the needs thatAlbert Cheng2000-01-261-20/+61
| | | | | | serial and parallel test files are tested in different file systems. Added the global variable, paraprefix, so that it can be set via command line option.
* [svn-r1837] Cleaned up a few warnings from the SGI compiler.Quincey Koziol1999-11-171-3/+3
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* [svn-r1832] * 1999-11-16Robb Matzke1999-11-161-105/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | ** configure.in ** configure [REGENERATED] ** src/H5private.h ** src/H5public.h ** src/Makefile.in Generates an H5pubconf.h file which is just like H5config.h except all the preprocessor symbols have `H5_' prepended. This was done so that the configuration results can be used in public header files without polluting the namespace. ** src/H5.c Added H5I_REFERENCE and H5I_VFL to the API tracing code so their names are printed instead of just numbers. ** src/H5FDstdio.c ** tools/h5import.c ** tools/h5repart.c ** tools/pdb2hdf.c Changed to use the `H5_' versions of configure results since these files include only the public API. ** test/big.c Removed a compiler warning. ** test/h5test.c Removed unused code.
* [svn-r1786] Added stdio VFL driver to the list of VFL drivers the user can test.Quincey Koziol1999-10-201-0/+3
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* [svn-r1753] Changes since 19991007Robb Matzke1999-10-151-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in ./src/H5config.h.in [REGENERATED] The /usr/ncsa/{include,lib} directories are only added if they actually exist. This fixes a warning on some systems. Checks for the <pdb.h> header file and also for either the PDB or Silo library, and if found prepares to compile the pdb2hdf program. ./config/distdep Relative path names for include files are changed to base names since the makefile contains the logic for searching and since it's likely that building the .distdep files happed from a location other than where they would be used in the file system. ./config/conclude.in Fixed shell errors when `for' loops iterate over nothing for the `uninstall' target. ./src/H5D.c ./src/H5Oefl.c File names for the external files are added to the heap when the dataset is created instead of when the object header is written. This fixes a rare infinite recursion bug. ./src/H5FD.c ./src/H5FDpublic.h Optimization to the free list causes H5FD_alloc() usage to go from >10 seconds to <0.4 second for one example (converting a 30MB equation of state file from PDB to HDF5 format). The optimization is to simply keep track of the largest item in the free list and not search the free list when the largest item is not big enough to satisfy the request. ./src/H5FDcore.c ./src/H5FDcore.h ./test/h5test.c If the `backing_store' property is true then a flush causes the entire contents of memory to be written to the specified file. This is in preparation for the ASCI/red optimizations and is currently tested by the pdb2hdf `--cached' switch. ./src/H5Odtypes.c Wrapped three long lines. ./tools/Makefile.in ./tools/pdb2hdf.c [NEW] A PDB-to-HDF5 translator. It only translates meta data -- the resulting HDF5 points into the PDB file for the raw data.
* [svn-r1585] Changes since 19990820Robb Matzke1999-08-241-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5D.c Added additional elements to a variable initializer in H5Dvlen_get_buf_size() to shut up a warning message. Also added the API tracing call. ./src/H5F.c Added file opening optimizations. If the driver doesn't support the ability to determine when two file handles refer to the same file (like MPIO and GASS) then H5F_open() makes fewer calls to the driver's open callback. Also, if the tentative file access flags are the same as the original flags then H5F_open() makes fewer calls to the file device. ./src/H5FD.c ./src/H5FDprivate.h ./src/H5FDpublic.h Added H5FD_get_class() so the library can get information about what file driver callbacks are defined. This will be useful when more optimization functions are added to the VFL, such as for MPIO derived datatype I/O. ./src/H5FDcore.c ./src/H5FDfamily.c ./src/H5FDmpio.c ./src/H5FDmulti.c ./src/H5FDsec2.c The driver symbols (like H5FD_CORE, etc) are actually function calls. The functions were fixed to return correct values even after calling H5close(). ./src/H5FDmulti.c ./src/H5FDmulti.h Added support for opening a file when parts are missing (only if the caller explicitly allows that in the file access property list). Moved some common code sequences into macros or functions. Added better support for reopening files. All the application has to know is that the file is a multi file and the base name from which all the member names are created. More debugging output when the file is opened with the H5F_ACC_DEBUG flag. Fixed various bugs. ./src/H5Fistore.c Chunked raw data was accidently allocated as meta data instead of raw data. ./src/H5I.c The H5Iget_type() function fails when invoked with an old object ID (an ID which has been closed down). ./test/h5test.c Added an extra argument when setting the multi file access property lists so the test fails if it can't open one of the sub-files. ./tools/h5ls.c Improved the algorithm for deciding what file driver to use. It basically tries all of the predefined drivers and is now able to open family, split, and multi files without looking for special characters in the file name. Added `-e' and `--errors' switches which cause errors from libhdf5 to be reported on stderr in addition to the simple error message displayed by h5ls.
* [svn-r1572] Changes since 19990810Robb Matzke1999-08-171-34/+51
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./src/H5FDmulti.c [NEW] ./src/H5FDmulti.h [NEW] ./src/Makefile.in ./src/hdf5.h The split driver was reimplemented as a more general "multi" driver which is capable of splitting data into multiple files like the family driver except the partioning is done by memory usage type instead of address. The H5Pset_fapl_split() function just calls H5Pset_fapl_multi() with arguments which prepare to split the address space into two files: meta and raw data. This is the first version. I plan to allow the open() call to relax a bit which would allow one to open an hdf5 file when only the meta-data file is present. This would allow a very large file to be split and stored on tape and the relatively small meta file to be mirrored on disk to allow limited browsing of the file (any request for raw data would fail). ./src/H5private.h ./src/H5F.c ./src/H5FD.c ./src/H5FDprivate.h ./src/H5FDpublic.h ./src/H5FDcore.c ./src/H5FDfamily.c ./src/H5FDmpio.c ./src/H5FDsec2.c Added the ability for a file driver to store information in the superblock which would be needed if the file were opened again later for reading. The format is driver-defined which allows users to extend it however they like. ./doc/html/H5.format.html Added information about the new driver information block of the superblock. This is where file drivers store information they need in order to reopen the file later. ./src/H5F.c ./src/H5Fprivate.h ./src/H5FD.c ./src/H5FDprivate.h ./src/H5FDpublic.h ./src/H5FDcore.c ./src/H5FDfamily.c ./src/H5FDmpio.c ./src/H5FDsec2.c ./src/H5Fistore.c ./src/H5R.c The file access properties and the file access property list were decoupled, which allows the property list to more cleanly contain properties for various levels of the file and which allows the property list to be modified more cleanly when opening files. ./src/H5.c ./src/H5FDpublic.h Removed H5FD_MEM_META and H5FD_MEM_GROUP since they're never used. ./src/H5D.c Changed the way we detect the MPIO driver in all these special cases. ./src/H5F.c ./src/H5Rpublic.h ./test/tfile.c The default file sizeof(offset) was changed to be a function of haddr_t instead of hsize_t. THE H5RPUBLIC.H DEFINITIONS WILL HAVE PROBLEMS IF THE USER CREATES A FILE WITH NON-DEFAULT OFFSET AND SIZE SIZES! ./src/H5F.c Fixed an uninitialized memory access bug in file closing related to the VFL. ./src/H5T.c ./src/H5Tpublic.h Added an H5T_NATIVE_HADDR predefined datatype which corresponds to the `haddr_t' type. ./test/Makefile.in Reformatted long lines. ./test/big.c ./test/cmpd_dset.c ./test/dsets.c ./test/dtypes.c ./test/extend.c ./test/external.c Removed the H5F_ACC_DEBUG flag from file creation/open calls. ./test/big.c Plugged a memory leak. ./test/h5test.c Added support for the `multi' driver. Removed #warning about not having the stdio driver. Plans are to not implement it since the sec2 driver serves the same purpose and testing didn't show any difference in execution times between the two.
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