| Commit message (Collapse) | Author | Age | Files | Lines |
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floating-point values.
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avoid compiler's
warning of comparing values with "==" or "!=".
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copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
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floating-point values in hyperslab.c. A few
macros are defined in h5test.h to check if the difference between two values is smaller than Epsilon.
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File format is not stable, don't keep files produced!
Description:
First stage of checkins modifying the format of groups to support creation
order. Implement "dense" storage for links in groups.
Try to clarify some of the symbols for the H5L API.
Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest
file format options (including "dense" link storage in groups)
Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation
order tracking in groups (although no index on creation order yet).
Remove --enable-group-revision configure flag, as file format issues are
now handled in a backwardly/forwardly compatible way.
Clean up lots of compiler warnings and other minor formatting issues.
Tested on:
FreeBSD/32 4.11 (sleipnir) w/threadsafe
Linux/32 2.4 (heping) w/FORTRAN & C++
Linux/64 2.4 (mir) w/enable-v1.6 compa
Mac OSX/32 10.4.8 (amazon)
AIX 5.3 (copper) w/parallel & FORTRAN
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Clean up whitespace/formatting.
Tested on:
Mac OS/PPC 10.4 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Feature
Description:
Sometimes the parallel prefix is given in the form of nfs:/mnt/pfs which
if given to a non-MPIO VFD like the default H5Fcreate, it would fail.
Added a new routine h5_rmprefix which would return the non-prefix component
part of the file name which would be okay for the default H5Fcreate and
such.
Platforms tested:
Tested in heping parallel.
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Description:
The file size test in C++ library failed on Copper because the
value returned by h5_get_file_size was intepreted incorrectly
due to different interger sizes.
Solution:
H5private.h: Added check to use stat64 and off64_t where appropriate.
h5test.c and h5test.h: used h5_stat_size_t in place of off_t.
tattr.cpp: used h5_stat_size_t in place of off_t.
Platforms tested:
Linux 2.4 (heping)
AIX 5.1 (copper)
SunOS 5.8 64-bit (sol) - still on going
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feature
Description:
Added the GetTestExpress and SetTestExpress to support the TestExpress mode
according to $HDF5TextExpress. For now, it is just defined or not, the
actual value does not matter.
Platforms tested:
heping(serial), mir (PP).
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Bug fix.
Description:
getenv_all will be called even when it is NOT an MPI application.
Solution:
Moved the use of getenv_all("HDF5_NOCLEANUP") to fix_name so that it will
be invoked only if a parallel driver is used.
Platforms tested:
hand tested in copper.
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Maintenance on Windows
Description:
No Alarm function on Windows
Solution:
Platforms tested:
MSVS 6.0 on Windows XP
Misc. update:
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new features
Description:
add support for compiling the library and testphdf5 in Windows
Solution:
Platforms tested:
Linux
AIX
Solaris
Windows VC6
Misc. update:
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Feature.
Description:
Added ALARM_ON, ALARM_OFF feature to terminate tests that run more than
the default time limit. So far, the feature is applied in the standard test
frame.
Platforms tested:
heping PP.
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Code cleanup
Description:
Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.
Solution:
Ran this script in each directory:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
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New feature
Description:
Initial checkin of B+ Tree code.
Platforms tested:
FreeBSD 4.11 (sleipnir)
h5committest
Misc. update:
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Description: Renamed test/dt_atomic.c to test/dt_arith.c(an abbreviation
of "arithmetic data types") to better describe the program. This checkin
broke down into three sections when the floating-point numbers are the
source, normalized, denormalized, and special values. If there's any
difference of destination values, only normalized value test reports
failure. The other 2 report only as warning.
Platforms tested: h5commitest and fuss
Misc. update: MANIFEST
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Feature
Description:
Added new function, getenv_all (only for parallel builds)
Solution:
getenv_all is a collective version of getenv. It is used to the return the value of
an environment variable in another task and can be used to synchronize all of the
environment variables used by all of the tasks. This helps to fix problems that commonly crop up
(like with HDF5_PARAPREFIX) when an environment variable does not propogate to other tasks.
This commit only includes the function. Future commits will replace the various getenv calls with getenv_all calls.
Platforms tested:
heping, sol, copper
Misc. update:
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Description:
Added function IncTestNumErrs to increment the number of errors
that is defined in testframe.c
Platforms tested:
Linux 2.4 (heping)
AIX 5.1 (copper)
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Fix SZIP filter to dynmically detect encoder.
Description:
Solution:
See:
http://hdf.ncsa.uiuc.edu/RFC/SZIP/Szip_dynamic_12_Oct.pdf
Changes to library tests, contingent on detecting SZIP encoder.
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feature
Description:
Another revamp of the test interface.
TestInit: is used to register Test Program name, test program specific
Usage and option parsing routines.
TestUsage: will invoke extra usage routine if provided.
TestParseCmdLine: will invoke extra option parsing routine if provided.
GetTestSummary() and GetTestCleanup() replaces the previous Summary and
CleanUp arguments of TestParseCmdLine.
test/testhdf5, test/ttsafe.c, testpar/t_mpi.c, testpar/testphdf5.c:
All have been updated to use the new Test Routines.
testpar/t_mpi.c:
Also a fix of a compiler optimization bug when pgcc in Linux is
used to compile it. Changed buf[] and expected to unsigned char
type to avoid a bug that failed to do sign-extension.
Platforms tested:
"h5committested"
Also tested thread-safe option in eirene.
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Feature
Description:
Changed TestParseCmdLine to accept an optional extra_parse()
function provided by indidivual test application. Extra_parse()
can handle extra options special to that test application.
Updated testhdf5.c to use the new syntax of TestParseCmdLine().
Platforms tested:
On eirene both serial and parallel.
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Feature
Description:
Added a feature such that if the test name starts with '-', do not run it
by default.
Platforms tested:
Eirene both serial and parallel.
Misc. update:
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Code cleanup
Description:
Remove bogus "#undef NDEBUG" at top of file, which was blocking compiler
flags from setting NDEBUG properly.
Platforms tested:
Solaris 2.7 (arabica)
FreeBSD 4.9 (sleipnir)
too minor to require h5committest
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Code cleanup
Description:
Added SetTest() to handle test controls.
Platforms tested:
h5committested.
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Feature.
Description:
Added GetTestParameters() to provide Test Parameters to
individual test programs.
Platforms tested:
"h5committested"
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Feature
Description:
Added to AddTest() a generic parameters pointer argument to
allow some extra parameters for some tests. E.g., test file
names can be customized during runtime and passed into the
test routines.
Platforms tested:
"h5committested".
Also run compat test in eirene.
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Code cleanup.
Description:
The routines residing in testframe.c was defined in testhdf5.h due to
historical reason. It really belongs to h5test.h because those routines
reside in libh55test.a.
Solution:
Moved them to the right place. Also removed the duplicated occurance
of testframe.c in the TEST_SRC.
Platforms tested:
Tested in o2 (SGI) parallel.
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New feature.
Description:
Added function SetTestVerbosity() so that other applications can
set the verbosity explicitedly without the whole testframe taking
over.
Added Verbose queries shorthands to make code more readable and
easier to change the levels of low, medium and high.
Platforms tested:
Eirene (both serial and parallel).
Misc. update:
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Improvement.
Description:
Verbosity level were specified by numbers which are not meaningful
and prone to typos.
Solution:
Adapted the Verbosity predefined level symbols from HDF4
and changed all numberic verbosity to symbolic values.
(Still need to convert some left over macros like MESSAGE.)
Platforms tested:
Eirene.
No h5committest since this is trivial.
Misc. update:
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Code cleanup & reorganization
Description:
Move further in the testing framework cleanup, eliminating all the
global variables (moving them into testframe.c as static variables) from the
testing framework code and moving it into the libh5test.a.
Platforms tested:
FreeBSD 4.9 (sleipnir) w & w/o thread-safety, c++ & parallel
h5committested
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Code cleanup
Description:
Refactor library testing framework (used for the testhdf5 & ttsafe tests)
to remove almost all of the duplicated code, moving the common code into a
new 'testframe.c' source file.
Platforms tested:
FreeBSD 4.9 (sleipnir) w & w/o thread-safety
h5committest
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Bug fix.
Description:
Cleaned up a duplicated definition of MAXNUMOFTEST that copper could
not tolerate.
Platforms tested:
"h5committested"
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Code reorg.
Description:
Move the InitTest() from individual tests (testhdf5 and ttsafe) to
libh5test (h5test.c) so that it can be shared among all tests.
Platforms tested:
Only tested in Eirene via serial with thread-safe enabled.
No other platforms test since this is pretty trivial.
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Code cleanup
Description:
Made automatic error printing routine, h5_errors(), static.
Passed along error stack in h5_errors()
Platforms tested:
h5committested
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Refactored code
Description:
Moved duplicated "get_file_size()" function from a couple of tests into a
central location.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committest
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Add windows specified macro H5_TESTDLL for test routines.
Description:
See the previous CVS message.
Solution:
Platforms tested:
windows2000(will not affect other platforms)
Misc. update:
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Purpase: Fortran Windows DLL support
Description: Fortran test uses functions h5_fixname and h5_cleanup from h5test.c.
Those were not exported, and Fortran could not link while using DLLs.
Solution: Added H5_DLL to functions prototype to export them from C DLL.
Platforms tested: Windows, h5committested.
Misc. update:
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Code cleanup
Description:
Added macro for reporting line #'s of test failures more easily.
Platforms tested:
FreeBSD 4.8 (sleipnir) w/C++
Linux 2.4 (burrwhite) w/FORTRAN
Solaris 2.7 (arabica) w/FORTRAN
IRIX64 6.5 (modi4) w/parallel & FORTRAN
(h5committest not run due to my ongoing difficulties with C++ on burrwhite).
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Bug fix
Description:
This fixes a bug in the low-level metadata caching code in the library
which could possibly lose metadata during file I/O when a lot of objects are
inserted into a group.
This also fixes a couple of (similar) fencepost bugs in the B-tree
deletion code.
Solution:
For the metadata bug - call the low-level driver's 'write' routine instead
of H5FD_write.
For the B-tree bug - include the correct number of keys.
Platforms tested:
FreeBSD 4.8 (sleipnir) w/C++
Linux 2.4 (burrwhite) w/FORTRAN
Solaris 2.7 (arabica) w/FORTRAN
IRIX64 6.5 (modi4) w/FORTRAN & parallel
(h5committest is still not working for me on burrwhite)
Misc. update:
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Update
Description:
Updated the Copyright statement
Platforms tested:
Linux (This change is only in the comments, so I just check that the
modules still compile)
Misc. update:
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Code cleanup
Description:
Clean up some compiler warnings...
Platforms tested:
FreeBSD 4.5 (sleipnir)
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Renamed pio_info_g as h5_io_info_g to better reflect its
general purpose.
Platforms tested:
eirene(pp)
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Feature
Description:
moved the routines of setting up and dumping MPI-info object to
test library so that it is avaiable for all tests too.
Platforms tested:
modi4(pp), eirene (serial)
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Migrate from configure macros of XYZ_ABC to H5_XYZ_ABC
Description:
configure generates many macros definitions on the fly and
were stored in src/H5config.h which is included by H5public.h.
But other software that uses hdf5 may also run their own configure.
There can be a clash in macro name space. We decided awhile ago
to prepend all generated macros with "H5_" to avoid conflicts.
The process has started and this commit completes it (at least attempt
to).
Solution:
Many macros symbols (e.g. SIZEOF_xxx and HAVE_xxx were changed to
H5_SIZEOF_xxx and H5_HAVE_xxx). Then H5private.h no longer includes
H5config.h. This cuts H5config.h away from HDF5 source code.
Pending issues:
The module of fortran and pablo are to be resolved in a different
commit.
Platforms tested:
eirene (parallel), arabica (solaris 7 --enable-fortran, --enable-cxx)
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New feature
Description:
Added h5_show_hostname to display the hostname of the host in
which the process runs. It can help identify location of process
in multiple processes or batch launching environments.
Platforms tested:
Eirene (pp)
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Update
Description:
Changed includes of the form:
#include <hdf5_file.h>
to
#include "hdf5_file.h"
so that gcc can pick them up easier without including the system
header files since we don't care about them.
Platforms tested:
Linux
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Clean up warnings
Description:
The "FAILED" macro is defined by Windows and is causing warnings and
potential errors when compiled on that platform.
Solution:
Change our macro from FAILED to H5_FAILED.
Platforms tested:
FreeBSD 4.2 (hawkwind)
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The "FILENAME" declared extern in h5test.h is not always used.
It was used in h5_cleanup to remove temporary files created
during tests. Not all tests codes have used this routine.
Indeed, quite a few of test programs do "#define FILENAME ".
Also, h5_cleanup needs to work in tandem with h5_fixname.
h5_fixname accepts an explicite base_name argument instead
of using the global variable FILENAME. That is cleaner.
Solution:
Added char *base_name[] as a new argument to h5_cleanup, in
the same style as h5_fixname. Removed "extern char *FILENAME..."
from use. Also, undo some unnecessary declaration of "char *FILENAME"
from some tests which don't use it at all (yet).
Platforms tested:
modi4-64(irix64), arabica(solari2.7), eirene(linux)
(arabica could not launch tests automatically. I had to hack
in LD_LIBRARY_PATH to make them run.)
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serial and parallel test files are tested in different file systems.
Added the global variable, paraprefix, so that it can be set via
command line option.
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----------------------
./src/H5public.h
We undefine a bunch of things that could get redefined in the config
file because some customers have applications that include headers
from multiple packages, all of which might be using autoconf.
Include <stdint.h> for the C9x types.
./test/h5test.h
More flushing of stdout for when testing is redirected down a pipe.
./tools/h5ls.c
Added a `-S' or `--simple' switch which causes the output to be
simplified somewhat for easier parsing by other scripts. For instance,
characters are escaped using a very simple mechanism instead of C's
more complicated backslash notation, data doesn't have `{}' or `[]'
characters interspersed for compound and array types, and data is
printed with exactly one element per line. This switch is now used by
an HDF5-to-HTML CGI script being developed for the DMF people.
./tools/h5tools.c
./tools/h5tools.h
The repeat threshold which controls how strings are printed when a
character repeats a bunch of times is now settable at runtime instead
of compile time. The default is to show all characters, like
"abceeeeeeeeeeeeeeeeeeeeeeeeeeeeeefgh"
But if you set it to something like 5 then any sequence of 5 or more
characters is replaced by something shorter, like:
"abc" 'e'x30 "fgh" or
Added an `str_locale' property which describes how to escape special
characters in strings. The default is C-like escapes but an
alternative is ESCAPE_HTML which replaces all non-alphanumeric
characters with a 3-character HTML escape of the form `%XX'
Fixed a bug where empty strings didn't even have the quote characters
printed. Now empty strings show up as `""' instead of absolutely
nothing.
Added a `per_line' property which controls the maximum number of
elements which will appear per line of output. The default is infinity
but in practice the right margin causes line breaks. By setting the
`per_line' value to one and the right margin to a very large value one
can achieve output with exactly one element per line.
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