| Commit message (Collapse) | Author | Age | Files | Lines |
| |
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
* Warnings fixes (#1680)
* Clean stack size warnings in sio_engine (#1687)
* Fixes stack size warnings in tcoords.c (#1688)
* Address some warnings from casting away of const (#1684)
* Fixes stack size warnings in ntypes (#1695)
* Fixes stack size warnings in dtransform (#1696)
* Fixes stack size warnings in set_extent test (#1698)
* Be a bit safer with signed arithmetic, thus quieting some signed-overflow warnings from GCC (#1706)
* Avoid a signed overflow: check the range of `entry_ptr->age` before
increasing it instead of increasing it and then checking the range.
This quiets a GCC warning.
* Avoid the potential for signed overflow by rewriting expressions
`MAX(0, fwidth - n)` as `MAX(n, fwidth) - n` for various `n`.
This change quiets some GCC warnings.
* Change some local variables that cannot take sensible negative values
from signed to unsigned. This quiets GCC warnings about potential
signed overflow.
* In a handful of instances, check the range of a signed integer before
increasing/decreasing it, just in case the increase/decrease overflows.
This quiets a handful of GCC signed-overflow warnings.
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix object size warnings in cache.c test (#1701)
* Fix some const cast and stack/static object size warnings (#1700)
* Fix various warnings
* Move HDfree_const to H5private.h for wider use
* Print output from all ranks in parallel tests on allocation failure
* Move const pointer freeing macro to h5test.h for now
* Stop lying about H5S_t const-ness (#1209)
Hyperslabs can be reworked inside several H5S callbacks, making H5S_t
non-const in some places where it is marked const. This change switches
these incorrectly const H5S_t pointer parameters and variables to
non-const where appropriate.
* Fix a few warnings after recent H5S const-related changes (#1225)
* Adjustments for HDF5 1.12
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: David Young <dyoung@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
* OESS-98 fix tools test for plugins
* sync fork
* Merge of changes from dev
* Move problem option to bottom of the list until fixed
* HDFFV-11106 - fix parsing optional args
* HDFFV-11106 add note
* grammer fix
* Whitespace after clang formatting
* Undo format version 11 changes
* Update check to working version
* Merge workflow and minor changes from develop
* Update supported platforms
* PR#3 merge from develop
* Merge gcc 10 diagnostics option from develop
* Merge #318 OSX changes from develop
* Merge serval small changes from dev
* fix typo
* Minor non-space formatting changes
* GH #386 copyright corrections for java folder
* revert because logic requires false return
* Merges from develop
#358 patches from vtk
#361 fix header guard spelling
* Remove case statement for H5I_EVENTSET
* Correct call with versioning
* Remove tabs
* Double underscore change
|
|
|
|
| |
file - src and test directories.
|
|
|
|
| |
Brings all features from develop. Note that RELEASE.txt has not been
updated (will be done in a future PR).
|
| |
|
| |
|
| |
|
| |
|
| |
|
|
|
|
|
|
| |
in tfile.c.
* General code tidying.
* Expanded tests to work with multi-file VFDs.
|
| |
|
|
|
|
|
|
|
|
| |
This implicitly adds support for changing the VOL connector for command-line
tools or any application linked with the library.
Also, add 'make check-vol' support for all directories, clearing up necessary
issues in testing scripts, etc.
|
|\
| |
| |
| |
| | |
* commit 'fe6bed2ad722578d0b701e29d22f591923d2fe9f':
Fix TESTING_2 macro to align output with TESTING macro
|
| |
| |
| |
| | |
Add more indentation to TESTING_2 macro
|
|/
|
|
|
|
|
| |
src/H5VLpassthru.c, switched to stashing VOL connector ID & info in
API context (in src/H5CX.c, src/H5CXprivate.h, src/H5F.c, src/H5Fint.c, and
src/H5Fefc.c), patched up all sorts of issues in the tests, to make them work
with 'check-vfd' (and 'check-vol' again).
|
|
|
|
|
|
| |
variables during testing, including connecting native, pass-through, and
dynamically loaded VOL connectors. Also bring native and pass-through
VOL connectors into alignment, removing the "H5VLnative_private.h" header.
|
| |
|
| |
|
|
|
|
|
|
|
| |
This required adding some code to generate a fake VFD class
to pass to H5FDregister().
Also, a bunch of whitespace and comment tidying.
|
|
|
|
|
|
|
|
|
|
| |
hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
|
|
|
|
| |
flushrefresh test. (Also refactor of message send / wait code)
|
|
|
|
|
|
|
|
|
| |
Switch test framework to dynamically allocate the testing array, and
expand the length of the description field.
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial & parallel
(h5committest forthcoming)
|
|
|
|
|
|
|
|
|
|
|
| |
replace functions like h5_clean_files() that also do things like
reset the error handler and close fapls.
Existing tests have not yet been updated to use these new
functions.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
autotools serial
|
|\
| |
| |
| |
| |
| |
| |
| | |
Sync w/trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.
This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.
Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)
Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/64 3.10.x (kituo) w/serial & parallel
Linux/64 2.6.x (ostrich) w/serial
|
| |
| |
| |
| | |
Tested: ummon
|
|\ \
| |/
| |
| | |
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
- Updated the preprocessor logic that defines the H5_ATTR_* macros. The Solaris
Studio compiler understands __attribute__ but not the specific attributes
that we use. The H5_ATTR_* macros are now defined as blank with that
compiler which significantly cleans up the warnings, making debugging
easier.
- Replaced a few lingering __attribute__ macros with H5_ATTR_* markup.
Tested on: h5committest
Solaris w/ Solaris Studio (emu)
|
|\ \
| |/
| |
| | |
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Clean up compiler warnings before merging in v3 metadata cache changes
from branch.
Tested on:
MacOSX/64 10.10.3 (amazon) w/serial & parallel
Linux/32 2.6.x (jam) w/serial & parallel
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Add testing for this.
Fix bug in printf string parsing.
Add test for this.
Other minor fixes/cleanup.
Tested: ummon
|
|/
|
|
|
|
|
| |
Various bug fixes, including a temporary fix for printf with FIRST_MISSING view.
Other cleanup.
Tested: ummon
|
|
|
|
| |
tested h5commitest, jam & platypus parallel.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Add encode/decode API routines for property lists: H5Pencode/H5Pdecode.
Tested on:
FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode
FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-ia64 2.6 (ember) w/Intel compilers, w/parallel, C++ & FORTRAN,
in production mode
Mac OS X/32 10.7.3 (amazon) in debug mode
Mac OS X/32 10.7.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Mac OS X/32 10.7.3 (amazon) w/parallel, in debug mode
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring generic improvements from encode/decode property list branch to
the trunk. This includes a better version of the property list comparison
routine, cleaned up compiler warnings, and some cleaned up property list
callbacks. Also, started on changes to clean up parallel test output, so that
it doesn't report successful tests from each process.
Tested on:
Mac OSX/64 10.7.4 (amazon) w/debug, GCC 4.7.x, FORTRAN, C++, threadsafe and parallel
Linux 2.6/32 (jam) w/debug
Solaris 2.7/64 (linew) w/debug
|
|
|
|
|
|
|
|
|
| |
Remove some leftover uses of the __FUNCTION__ macro, replacing them with
FUNC macro, as used everywhere else.
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
(too minor to require h5committest)
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
| |
Correct error in loading local heap prefix & data block from the file.
Sometimes the local heap's prefix could be loaded before the data block (e.g.
using H5Oget_info), but then when the data block was loaded later, the free
list information would get lost, causing the heap's size to grow larger than
necessary. This is Jira bug #HDFFV-7767
Tested on:
Mac OS X/32 10.7.2 (amazon) w/debug
(h5committest coming up)
|
|
|
|
|
|
|
|
|
| |
Description:
Added internal tesitng routines to traverse a file and verify that symbol table
information is *always* cached, whenever possible. Added this check to the end
of many tests to check all the test files, right before the call to h5_cleanup.
Tested: jam, amani, heiwa (h5committest)
|
|
|
|
|
|
| |
in h5private.h.
Tested: local linux, windows
|
|
|
|
|
|
|
|
| |
header. This corrects the
inconsistent dll linkage warning and matches the other linkage defines. Changed H5_DLLVAR to H5TEST_DLLVAR.
Tested: windows
|
|
|
|
|
|
|
|
|
| |
Add in override for testing timeout alarm to allow "HDF5_ALARM_SECONDS"
environment variable to change the timeout value from the default value.
Tested on:
Mac OS X/32 10.6.4 (amazon) w/debug & production
(Too minor to require h5committest)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
honest3 v1.8 failed in parallel test. It got stuck in the same
testpar/testphdf5 subtest (cbhsssdrpio). This is an old problem.
Upon closer inspection, the testphdf5, when terminated, had clocked
up 1hr 9min 46 sec wall clock time. Honest1 system also sent a message
that an mpi process has used up 30+ CPU minutes which exceeded their login
node cpu time limit and they killed the process. I also did a hand-run
of testphdf5. All subtests before cbhsssdrpio completed in a few minutes.
Therefore, it is safe to say the majority of the 70 minutes of wall clock
time are spent in the sub-test cbhsssdrpio. It also used up lots of CPU
time. cbhsssdrpio is likely infinite looping.
Since MPI application is prone to infinite looping due to message deadlock,
the testphdf5 has a built-in protection to give each subtest at most 20 minutes
of wall-clock time to run. When the 20 minutes wall-clock time is exceeded,
the testphdf5 will attempt to terminate itself. This prevents unnecessary
CPU time consumption in infinite looping.
But that clock limit was changed to 30 and then 60 minutes. I should have
but failed to, noticed the change mentioned by Quincey. IMO, 20 wall clock
time is more than sufficient for each subtest of testphdf5 to complete.
If a subtest takes longer than 20 minutes, it is likely infinite looping.
Giving it more time will not help.
If a subtest of testphdf5 takes more than 20 minutes, it should be broken
down to small tests that will finish way under 20 minutes so that it is
much easier to see progress and identify any deadlock problems.
In view of this, I am changing the testphdf5 time limit back to 20 minutes.
This will at least stop the CPU TIME exceeding limits and annoying the
system administrators.
Maybe there could be a provision, such as environment variable like
$HDF5_ALARM_SECOND to modify the alarm duration on individual execution.
Even so, that should be used temporary to see if an execution just needs
a little more time.
Tested: just eyeballed as the change is trivia.
|
|
|
|
|
|
|
| |
Bump the testing timer value from 30 to 60 minutes.
Tested on:
None, just eyeballed, too simple to require test
|
|
|
|
|
|
|
|
|
|
| |
Fix const pointer issues for projection construction routine and also
bump time before alarm kicks in to terminate a test from 20 minutes to 30
minutes, to give the PGI compiler tests w/debugging enabled a chance to finish.
Tested on:
Mac OS X/32 10.6.4 (amazon) w/debug
Linux/32 2.6.18 (jam) w/PGI & debug
|
|
|
|
|
|
|
|
|
| |
Re-run bin/reconfigure to catch up with recent rearrangements, remove some
unused srcdir headers and duplicated code in main test header.
Tested on:
Mac OS X/32 10.6.2 (amazon) w/debug & prod
Linux/32 2.6 (jam)
|
|
|
|
|
|
|
|
| |
Centralize common code for srcdir lookups.
Tested on:
Mac OS X/32 10.6.2 (amazon) w/debug & prod
Linux/32 2.6 (jam)
|