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* Update Copyright headers. (#2534)Larry Knox2023-03-131-1/+0
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* clang 13 format #1933 (#1939)Allen Byrne2022-07-271-5/+5
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* Merge test changes from develop (#959)Allen Byrne2021-08-251-3/+3
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* Update URL in source file Copyright headers for web copy of COPYINGLarry Knox2021-02-201-1/+1
| | | | file - src and test directories.
* Manual sync with develop (#95)Dana Robinson2020-11-171-7/+7
| | | | Brings all features from develop. Note that RELEASE.txt has not been updated (will be done in a future PR).
* Merge changes from developAllen Byrne2020-10-081-2/+2
| | | | | Comments and whitespace Skip file-locking and cache changes
* Cleanup comments in tests, align comments better, update vfd testAllen Byrne2020-10-051-1/+1
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* Source formattedAllen Byrne2020-10-011-452/+411
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* Sync with developDana Robinson2020-08-011-7/+7
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* Fixed some exit calls.Dana Robinson2019-09-071-7/+5
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* Add HD prefix to testsAllen Byrne2019-08-151-73/+73
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* Add support for GCC 7.x warnings, update warnhist script to account for them,Quincey Koziol2019-06-211-6/+2
| | | | clean up warnings.
* Cleanup overuse of include filesAllen Byrne2018-02-141-207/+205
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Changes to be committed:Frank.Willmore2016-10-251-4/+4
| | | | | | | | | | | | | | | | | | | | | | | | modified: bittests.c modified: cmpd_dset.c modified: dsets.c modified: dt_arith.c modified: dtypes.c modified: extend.c modified: fillval.c modified: filter_fail.c modified: flush1.c modified: gen_cross.c modified: hyperslab.c modified: istore.c modified: links.c modified: links_env.c modified: objcopy.c modified: plugin.c modified: tcheck_version.c modified: unlink.c modified: unregister.c Minor fixes to replace numeric exit codes with MACRO declarations. Not all codes found were boolean, and those cases were not changed.
* [svn-r30285] Description:Quincey Koziol2016-08-131-10/+10
| | | | | | | | | More warning cleanups, bringing the build down to 25 unique types of warnings, with 550 warnings in 122 files (down from 28, 770, and 134). Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r27204] Description:Quincey Koziol2015-06-151-1/+1
| | | | | | | | | Clean up compiler warnings before merging in v3 metadata cache changes from branch. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r26333] Eliminates gcc warnings due to -Wunsuffixed-float-constants.Dana Robinson2015-03-011-3/+3
| | | | | | | | | | | | - Adds 'F' suffixes for most float constants. - A few constants MUST be of type double. These now receive the long double L suffix and are then cast to double. I do this via a new H5_DOUBLE() macro which was added to H5private.h. Fixes: HDFFV-9148 Tested on: h5committest
* [svn-r24709] rename H5V to H5VM since H5V is needed in the fastforward ↵Mohamad Chaarawi2014-02-131-19/+19
| | | | | | | | | | | | project for view objects. The addition of view objects in the fastforward project is expected to be brough into the trunk sometimes in the future, which is why we need to make this change. Tested Manually on Jam and Ostrich. Tested with h5commitest - Koala with intel compilers failed, but nothing had to do with those changes. error on Koala: error while loading shared libraries: libirng.so
* [svn-r19272] Description:Quincey Koziol2010-08-201-15/+15
| | | | | | | | | | | | Close out various resource leaks and usages of uninitialized memory that were flagged by valgrind. [There's still some more valgrind warnings, but it's better now... :-/ ] Also clean up warnings and code formatting. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug & valgrind (h5committest forthcoming)
* [svn-r18388] Description:Quincey Koziol2010-03-061-844/+871
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring changes from Coverity session from branch into trunk: r18378: Fixed coverity issues 207 and 322. Pointer hdr was checked for NULL after being asserted and dereferenced. Check was removed. r18379: Fix coverity issues # 88 and # 435. r18380: Fixed Coverity issue # 85. Added check of returned pointer for NULL before use. r18381: Resolve coverity issues # 214 and # 215 r18382: Issue 131: Add null checks to allocations and check for free in error handling r18383: Issue 421: Reorganized code to make intention clearer. Also, set local variable fl to NULL after transfer to tail. Heap->freelist will take care of all allocations r18384: Coverity #249 and #250 - STRING_ATT_CHECK wasn't allocated before being used and freed in function test_write_vl_string_attribute and test_read_vl_string_attribute. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & prod (h5committested in daily tests)
* [svn-r17980] Description:Quincey Koziol2009-12-101-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring Coverity changes into the trunk: (also other minor cleanups) r17955: Fix Coverity item 24. Add missing error condition to H5AC_ext_config_2_int_config. r17956: Fix Coverity item 24. Improve error checking in H5A_compact_build_table_cb. r17957: Fix Coverity item 150. Fix warning in H5A_compact_build_table_cb. r17958: Fix Coverity item 117. Fix error handling in H5B_shared_new. r17959: Fix Coverity item 209. Added an assertion for leaf->shared in H5B2_cache_leaf_dest. r17960: Fix Coverity item 208. Added an assertion for internal->shared in H5B2_cache_internal_dest. r17961: Fix Coverity item 89. Reworked the code to avoid array overrun in H5C__autoadjust__ageout__insert_new_marker. r17962: Fix for coverity Resource_leak 195,203,204,205. r17963: Fix Coverity item 44. Prevented potential NULL dereference in H5D_btree_debug. r17964: Fix Coverity issues #197, 198 & 199: memory not being released. (Also clean up other resource leaks in nearby and/or similar code). r17965: Fix Coverity issue #151: release resources on error r17966: Fix Coverity issue #187: Remove leftover code remnant from prior bugfix which was causing resource leak of open files. r17967: Fixed Coverity issues # 193 & 194. Removed unnecessary memory allocation and added comparison of length of path parameter to the size of the destination buffer in h5import.h/h5import.c. r17968: Fix Coverity item 144. Fixed memory leak on error in H5D_chunk_copy. r17969: Fix for coverity Resource_leak #196. r17970: Coverity 167-173: Initialized pointer of buffers. In error handling, closed types and free memory. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r15628] Description:Quincey Koziol2008-09-161-1/+1
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15150] Purpose: Separate Windows function macro definitions to win32defs.hScott Wegner2008-06-051-9/+9
| | | | | | | | | | | | | | Description: In library code, we try not to use system calls directly, but instead use the HD{function} macro instead. This way, we can map special versions of the call on particular systems. Previously, it was all done in H5private.h. However, in an effort to clean up platform-specific definitions, we move all of the Windows macros into a separate file, win32defs.h. This way, we can use the non-Posix versions that Visual Studio sends warnings about. Some macros are set specifically in the platform-specific header files. Then, any macros left unset will be set by the "default" implementation in H5private.h. This checkin also cleans up various source files to use the HD* macros when possible. Tested: VS2005 on WinXP VS.NET on WinXP h5committest (kagiso, linew, smirom)
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13238] A trial fix for the comparison of equality between ↵Raymond Lu2007-02-051-1/+5
| | | | | | floating-point values in hyperslab.c. A few macros are defined in h5test.h to check if the difference between two values is smaller than Epsilon.
* [svn-r12833] Description:Quincey Koziol2006-10-311-55/+55
| | | | | | | | Clean up more warnings... Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12295] Purpose:James Laird2006-04-211-1/+3
| | | | | | | | | | | | | | | | | | | Several bug fixes Description: Added config file for Cray X1 (previous file was misnamed) Simplified some code in hyperslab.c test that seemed to have been confusing compiler on Cray X1. Fixed typo in config/commence.am Cleaned up hl/src/Makefile.am Solution: All four fixes should be straightforward. The failure on Cray was very difficult to debug, but involved arithmetic errors. This change seems to fix it. Platforms tested: heping, copper, sol, some Cray X1 (more testing when system comes back up)
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-10/+10
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10628] Purpose:Quincey Koziol2005-04-181-3/+3
| | | | | | | | | | | Code cleanup Description: Clean up various warnings reported by the Windows team. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r9727] Purpose:Quincey Koziol2004-12-291-29/+29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r8383] Purpose:Quincey Koziol2004-04-181-5/+5
| | | | | | | | | | | | | Code cleanup Description: Clean up lots of warnings based on those reported from the SGI compilers as well as gcc. Platforms tested: SGI O3900, IRIX64 6.5 (Cheryl's SGI machine) FreeBSD 4.9 (sleipnir) w/ & w/o parallel h5committest
* [svn-r7829] Purpose:Quincey Koziol2003-11-081-70/+39
| | | | | | | | | | | | | | | | | Bug fix & code cleanup Description: Allowing the library to call malloc with a size of 0 bytes causes problems for some users, so we check for allocations of 0 bytes and disallow them now. Cleaned up some code which could call malloc with 0 size. Changed some code calling HDmalloc directly to call H5MM_malloc(), which allows us to check for 0 sized allocations. Platforms tested: FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r6825] Purpose:Quincey Koziol2003-05-071-4/+171
| | | | | | | | | | | | | | | | | | | | | | | | | New feature/enhancement Description: Chunked datasets are handled poorly in several circumstances involving certain selections and chunks that are too large for the chunk cache and/or chunks with filters, causing the chunk to be read from disk multiple times. Solution: Rearrange raw data I/O infrastructure to handle chunked datasets in a much more friendly way by creating a selection in memory and on disk for each chunk in a chunked dataset and performing all of the I/O on that chunk at one time. There are still some scalability (the current code attempts to create a selection for all the chunks in the dataset, instead of just the chunks that are accessed, requiring portions of the istore.c and fillval.c tests to be commented out) and performance issues, but checking this in will allow the changes to be tested by a much wider audience while I address the remaining issues. Platforms tested: h5committested, FreeBSD 4.8 (sleipnir) serial & parallel, Linux 2.4 (eirene)
* [svn-r6434] Purpose:Quincey Koziol2003-02-241-9/+15
| | | | | | | | | | | | | | Code cleanup Description: Removed extraneous __FUNCTION__ declaration that was causing warnings on Windows. Updated copyright information. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)}
* [svn-r6383] Purpose:Quincey Koziol2003-02-071-0/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | New feature for developers. Description: Added "function stack" tracing to library. This allows developers (there is no public API) to call H5FS_print within the library and get a listing of the functions traversed to reach that point in the library. Eventually, I may add support for reporting the parameters to each function also... Mainly for debugging parallel I/O programs, but I think it will come in handy in other cases also. The function stack tracking is controlled with a configure switch: --enable-funcstack, which defaults to enabled currently. When we branch for 1.6, we should change the default setting on the branch to be disabled. Also, added a destructor to the thread-specific keys when thread-safety is turned on in the library. Otherwise, they were leaking memory and causing difficult to debug errors in threaded programs (like the test/ttsafe test). Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) w/thread-safety enabled. Misc. update: Updated MANIFEST with new files added (src/H5FS.c & src/H5FDprivate.h) Update release_docs/RELEASE with thread-safety bug fix.
* [svn-r5468] Purpose:Quincey Koziol2002-05-281-0/+1
| | | | | | | | | | Code cleanup. Description: Included H5Eprivate.h for a couple of tests which needed it... Platforms tested: IRIX64 6.5 (modi4)
* [svn-r4643] Purpose:Quincey Koziol2001-11-271-3/+3
| | | | | | | | | | | | | | | | | | | | | | Code cleanup Description: Windows is generating hundreds of warnings from some of the practices in the library. Mostly, they are because size_t is 32-bit and hsize_t is 64-bit on Windows and we were carelessly casting the larger values down to the smaller ones without checking for overflow. Also, some other small code cleanups,etc. Solution: Re-worked some algorithms to eliminate the casts and also added more overflow checking for assignments and function parameters which needed casts. Kent did most of the work, I just went over his changes and fit them into the the library code a bit better. Platforms tested: FreeBSD 4.4 (hawkwind)
* [svn-r4355] Purpose:Quincey Koziol2001-08-141-14/+14
| | | | | | | | | | | | | | | | | | | | | | Code cleanup (sorta) Description: When the first versions of the HDF5 library were designed, I remembered vividly the difficulties of porting code from a 32-bit platform to a 16-bit platform and asked that people use intn & uintn instead of int & unsigned int, respectively. However, in hindsight, this was overkill and unnecessary since we weren't going to be porting the HDF5 library to 16-bit architectures. Currently, the extra uintn & intn typedefs are causing problems for users who'd like to include both the HDF5 and HDF4 header files in one source module (like Kent's h4toh5 library). Solution: Changed the uintn & intn's to unsigned and int's respectively. Platforms tested: FreeBSD 4.4 (hawkwind)
* [svn-r3770] Purpose:Bill Wendling2001-04-031-3/+3
| | | | | | | | | | | | | | | | | Update Description: Changed includes of the form: #include <hdf5_file.h> to #include "hdf5_file.h" so that gcc can pick them up easier without including the system header files since we don't care about them. Platforms tested: Linux
* [svn-r3252] Purpose:Quincey Koziol2001-01-091-2/+2
| | | | | | | | | | | | | Code cleanup. Description: Fixed _lots_ (I mean _tons_) of warnings spit out by the gcc with the extra warnings. Including a few show-stoppers for compression on IRIX machines. Solution: Changed lots of variables' types to more sensible and consistent types, more range-checking, more variable typecasts, etc. Platforms tested: FreeBSD 4.2 (hawkwind), IRIX64-64 (modi4)
* [svn-r2866] Purpose:Quincey Koziol2000-11-111-1/+1
| | | | | | | | Code cleanup Description: Found more "Have_foo" usage and converted them to "H5_HAVE_foo" Platforms tested: FreeBSD 4.1.1 (hawkwind)
* [svn-r2533] Rolled back the changes I committed since Albert fixed the ↵Bill Wendling2000-09-111-4/+0
| | | | | | problem with FILENAME being extern global...
* [svn-r2532] Added a trivial FILENAME definition to those programs linked withBill Wendling2000-09-111-0/+4
| | | | h5test.o, which requires the definition to work...
* [svn-r2531] Description:Albert Cheng2000-09-101-4/+0
| | | | | | | | | | | | | | | | | | | The "FILENAME" declared extern in h5test.h is not always used. It was used in h5_cleanup to remove temporary files created during tests. Not all tests codes have used this routine. Indeed, quite a few of test programs do "#define FILENAME ". Also, h5_cleanup needs to work in tandem with h5_fixname. h5_fixname accepts an explicite base_name argument instead of using the global variable FILENAME. That is cleaner. Solution: Added char *base_name[] as a new argument to h5_cleanup, in the same style as h5_fixname. Removed "extern char *FILENAME..." from use. Also, undo some unnecessary declaration of "char *FILENAME" from some tests which don't use it at all (yet). Platforms tested: modi4-64(irix64), arabica(solari2.7), eirene(linux) (arabica could not launch tests automatically. I had to hack in LD_LIBRARY_PATH to make them run.)
* [svn-r2528] Linking errors occured with these files. They link with ↵Bill Wendling2000-09-081-0/+4
| | | | | | | libh5test, but libh5test wants FILENAME to be defined. I have no clue why this was working before...
* [svn-r1241] fixed some errors in my conditional compile statements from ↵Patrick Lu1999-04-301-5/+5
| | | | | | | yesterday. changed ifdef WIN32 && _HDF5USEDLL_ to if defined(WIN32) && defined(_HDF5USEDLL_) and did something similar for the not cases.
* [svn-r1236] i had to change some of the h5mm_xfree calls to just hdfree for ↵Patrick Lu1999-04-291-4/+19
| | | | | | the dll version it was causing some crashes otherwise
* [svn-r1211] Took out linefeeds from hyperslab.c and changed a datatype in ↵Quincey Koziol1999-04-231-2/+1
| | | | | | tselect.c to make it more portable.
* [svn-r1191] moved some code around to fix a crash.Patrick Lu1999-04-161-2/+18
| | | | code is surounded by #ifdef WIN32
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