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* VFD SWMR: sync with develop (#830)Dana Robinson2021-07-121-2/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Normalization with develop * Removes checks and work-arounds for strtoll and strtoull (#769) * Removes checks for (v)snprintf, which are C99 (#772) * Update missing release note info. (#776) * Replaces the H5_OVERRIDE macro with override (#773) The macro is no longer necessary now that we require C++11. * Cleans up some POSIX header bits in H5private.h (#783) * Removes outdated checks for ways inline might be defined (#781) These are obsolete now that we require C99. * Removes checks for system(), which is C89/90 (#782) * Removes C++ dependency on H5private.h (#774) * Removes C++ dependency on H5private.h Most C API calls have been removed, aside from a few uses of free, where we just dropped the 'HD'. A couple of H5_ATTR_UNUSED macros were also replaced with (void) statements. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Further simplifies Autotools type size checks (#789) Also fixes an issue where clock_gettime and difftime are not detected due to earlier simplifications of this code. * Release Note (#784) * Normalization of CMake H5pubconf.h with Autotools (#791) Mostly just moving things around and changing the comments to keep the delta small. The only symbol change is that for curl/curl.h which I changed to H5_HAVE_CURL_CURL_H to match the Autotools. This symbol is not used in the library and is just an artifact of the checks. * Fix tools test (#794) * Removes ancient Autotools cruft (#790) * Reorganization of C and POSIX headers in H5public.h & H5private.h (#793) * Reorganization of C and POSIX headers in H5public.h & H5private.h Consolidated and removed duplicates * It turns out Windows has sys/types.h Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Removes checks for signal and set/longjmp, which are C89 (#798) Also removes checks for setjmp.h and stddef.h * Assume frexpl/f and fabsl/f, which are C99 (#799) * Assume the library has C99 types in C++ type code (#806) * Assume the library has C99 types in C++ type code * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes obsolete equivalents of C99's __func__ (#800) * Cleans up POSIX/C bits in H5private.h (#804) * Cleans up POSIX/C bits in H5private.h * Assume difftime exists (C89) * Reorg AC_CHECK_HEADERS so headers are in alphabetical order * Split off networking-related AC_CHECK_HEADERS * Remove unused UNAME_CYGWIN from configure.ac * Remove checks for unused sys/timeb.h * Tidying pass over H5private.h HD prefix macros * Tidy H5win32defs.h * Add HD prefix to various scanf calls * Committing clang-format changes * Fixes to the alarm(2) code used in the tests to make Windows happy Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Brings the tools getopt(3) replacement into the main library (#803) * Moves get_option from the tools library to the C library * Adds H5 prefix to get_option call and variables * Renames the H5_get_option long options struct and enum * Removes type guesses when C99 types are missing (#807) * Assume C99 types exist in H5detect.c (#808) * Fixes parallel issues from recent C99 changes * Adds MPE FUNC --> __func__ changes missed in earlier PRs * Fix typo * Fixes parallel issues from recent C99 changes (#809) * Fixes parallel issues from recent C99 changes * Adds MPE FUNC --> __func__ changes missed in earlier PRs * Even more missed FUNC --> __func__ macros * Removes remaining H5_TIME_WITH_SYS_TIME cruft (#810) Mostly from CMake * Merges with develop * Committing clang-format changes * Normalization with develop * direct_chunk test and H5Dget_chunk_storage_size changes * Removes unused H5O call * Brings some dataspace changes from the combo branch merge Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Much normalization with develop (#701)Dana Robinson2021-05-281-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Brings CMake updates from develop * Brings reduction in pedantic casts from develop * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Formatted source * Bring over some VOL registration changes * VOL cleanup * H5VL_request_status_t substitutions * H5F.c cleanup * Minor API tweaks from develop * Moves H5G package init/teardown to H5Gint.c * H5G cleanup * H5M cleanup * H5SM cleanup * H5T cleanup * H5R cleanup * H5Lpublic.h cleanup * H5L cleanup * H5O cleanup * H5A, H5CS, and H5AC cleanup * Moved H5A init/teardown code to H5Aint.c * Moves H5D I/O functions to H5D.c * H5D cleanup * Misc minor cleanup * H5P close cleanup * H5Tpublic.h cleanup * Fixes err_compat test * H5PLpublic.h cleanup * Updates H5Ppublic.h * H5Fpublic.h updates * H5A.c cleanup * Brings over H5Aexists and related changes * Brings CMake shell testing changes from develop * Close callback changes * H5R and H5Tcommit normalization * err_compat test works now * H5O tweaks * Updates VOL registration code * Brings over H5VL_create_object * H5Tconv.c reformatting * H5T.c tweaks * Brings datatype and reference updates from develop * Brings VOL plugin loading changes from develop * Brings event sets from develop * Brings async functions over * Tools changes * Brings over many tools changes from develop * Brings VOL flags from develop * Fixes h5dump double/float tests * Updates h5repack tests * Brings h5diff test changes from develop * Last h5dump changes * Brings test changes from develop * Committing clang-format changes * Tidied h5_testing() * Brings chunk iteration code + misc from develop * Updates vds test * Enables external link parallel test * Brings updated property lists from develop * H5G changes from develop * H5MF cleanup * Brings vfd_swmr test back into CMake * Updates threadsafe test * Updates plist test * Brings recent changes from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Brings a lot of smaller changes from developDana Robinson2021-04-091-133/+146
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* Updates license url and history docsDana Robinson2021-03-251-1/+1
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* Formats the source and updates the gcc warning pragmasDana Robinson2021-03-251-7031/+11340
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* Minor normalizations with hdf5_1_10Dana Robinson2020-07-311-10/+9
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-161-371/+4627
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* Small changes from the token_refactoring branch, to reduce the delta to developQuincey Koziol2020-01-041-143/+242
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* Yanked -Wc++-compat from the flags used to build the C library in bothDana Robinson2019-12-041-16/+17
| | | | the Autotools and CMake.
* Fixed a bug (HDFFV-10899) where the behavior of the deprecatedDana Robinson2019-10-041-2/+7
| | | | | | | | H5Gget_objinfo() call had changed and passing in a non-existing soft link with a statbuf of NULL passed instead of failed (as it should as per the RM). The HDF5 1.8 and 1.10 behavior was restored and H5Gget_objinfo() will now fail and return -1 as before.
* Fixed some exit calls.Dana Robinson2019-09-071-4/+3
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* Mostly whitespace in testpar, addl changes for tmp dirAllen Byrne2019-08-151-97/+97
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* Changed the directory name left out from the previous commit.Songyu Lu2019-08-141-1/+1
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* Changed the name of the temporary directory from 'tmp' to a special name to ↵Songyu Lu2019-08-141-1/+1
| | | | avoid possible conflicts.
* Added the map (H5M) APIDana Robinson2019-08-131-0/+6
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* Mostly whitespace cleanup and consistent test formatAllen Byrne2019-07-311-2413/+1407
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* Correct format of drive checkAllen Byrne2019-07-221-5/+9
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* HDFFV-10845 fix comment syntaxAllen Byrne2019-07-211-2/+2
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* HDFFV-10845 Windows drive can only goto ZAllen Byrne2019-07-211-946/+950
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* Updated configure & CMake compiler flags for GCC 8.x, along with correspondingQuincey Koziol2019-06-281-99/+99
| | | | | changes to warnhist script (and some extra improvements for condensing C++ and Java warnings), and fixed a bunch of warnings.
* Add support for GCC 7.x warnings, update warnhist script to account for them,Quincey Koziol2019-06-211-0/+2
| | | | clean up warnings.
* Align H5Lcreate_ud behavior with documentation for NULL udata pointerJordan Henderson2019-01-031-0/+6
| | | | Add test for H5Lcreate_ud fix
* Add error checking to the minimized dset header size calculation.Jacob Smith2018-12-211-16/+16
| | | | Update printf->HDprintf statements.
* Fix mistake with H5E_BEGIN_TRY {...} H5E_END_TRY block containing ↵Jacob Smith2018-12-201-1/+1
| | | | | | ERROR-raising macros. Formatting tweaks.
* Merge branch 'develop' into dset_ohdr_minimizeJacob Smith2018-12-181-2/+0
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| * Removed H5I_REFERENCE from the library. It has always been unusedDana Robinson2018-12-081-2/+0
| | | | | | | | and has been marked 'deprecated' since 1.10.0. Fixes HDFFV-10252.
* | Reformat to be more consistent with existing code.Jacob Smith2018-12-131-8/+8
| | | | | | | | Fix a few typos.
* | Merge branch 'develop' into dset_ohdr_minimizeJacob Smith2018-12-121-7/+10
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| * VOL FEATUREDana Robinson2018-10-101-0/+2
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| * Develop normalization with vol_integration.Dana Robinson2018-09-191-8/+8
| | | | | | | | | | Mostly peripheral things like the tools and wrappers, with just enough core library code to support that.
* | Incorporate minimized dset ohdr tests into extant suite.Jacob Smith2018-11-191-160/+191
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* Changes made based on feedback from pull request #1039.Vailin Choi2018-05-141-44/+44
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* Fix for HDFFV-10180 Performance issues with H5Oget_info.Vailin Choi2018-04-241-57/+57
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* Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-6/+10
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* Rework of the POSIX file open permissions and macros to clean upDana Robinson2017-04-281-6/+6
| | | | | | HDopen() calls. Also fixed a minor const warning in the core VFD.
* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Final merge of page buffering branch to developQuincey Koziol2017-03-141-0/+2
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* Misc. small cleanups to sync against incoming page buffering changes.Quincey Koziol2017-03-021-1/+1
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* Correct issues from pull request reviews.Quincey Koziol2017-02-281-1/+1
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* Corrected version of 4b5e05c084f93c35dae946c2c9e814d565a613b0:Quincey Koziol2017-02-281-4/+8
| | | | | Fix some more signed -> unsigned value issues with cache data structures, also misc. style cleanups. All to align w/incoming page_buffering changes.
* Revert "Fix some more signed -> unsigned value issues with cache data ↵Quincey Koziol2017-02-281-8/+4
| | | | | | structures, also" This reverts commit 4b5e05c084f93c35dae946c2c9e814d565a613b0.
* Fix some more signed -> unsigned value issues with cache data structures, alsoQuincey Koziol2017-02-231-4/+8
| | | | misc. style cleanups. All to align w/incoming page_buffering changes.
* Cleanups and normalizations against incoming page_buffering changes.Quincey Koziol2017-02-201-2/+1
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* Merge SWMR-related testing to existing tests.Quincey Koziol2016-12-181-2/+99
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* Changes to be committed:Frank.Willmore2016-10-251-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | modified: bittests.c modified: cmpd_dset.c modified: dsets.c modified: dt_arith.c modified: dtypes.c modified: extend.c modified: fillval.c modified: filter_fail.c modified: flush1.c modified: gen_cross.c modified: hyperslab.c modified: istore.c modified: links.c modified: links_env.c modified: objcopy.c modified: plugin.c modified: tcheck_version.c modified: unlink.c modified: unregister.c Minor fixes to replace numeric exit codes with MACRO declarations. Not all codes found were boolean, and those cases were not changed.
* [svn-r30189] Description:Quincey Koziol2016-07-181-1/+0
| | | | | | | | | Clean up more warnings: drop the warning count from ~1310 down to ~940, with only 31 types of warnings in 148 files (down from 38 types in 167 files). Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30151] Fix daily test failures for checkin #30143 for HDFFV-9940.Vailin Choi2016-07-061-3/+3
| | | | Tested on osx1010test, moohan, emu, kituo.
* [svn-r30143] Fix for HDFFV-9940.Vailin Choi2016-07-041-0/+277
| | | | Tested on jam, osx1010test, moohan, platypus, emu, kite, kituo, mayll, ostrich, quail.
* [svn-r29035] Removed external links test from external storage test.Dana Robinson2016-02-021-1/+1
| | | | | | | | This test is duplicated more comprehensively in the links.c file so there is no need to copy it over. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial autotools
* [svn-r28761] Description:Quincey Koziol2016-01-011-18/+39
| | | | | | | | | | | | Clean up many mismatches between malloc/free and H5MM_malloc/H5MM_xfree in the library and tests (and use of H5free_memory and H5Dvlen_reclaim). Also make H5Ocopy use a private version of H5Lexists, which doesn't internally throw (and suppress) errors when an object (or the path to it) isn't found in the destination. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
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