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* Align H5Lcreate_ud behavior with documentation for NULL udata pointerJordan Henderson2019-01-031-0/+6
| | | | Add test for H5Lcreate_ud fix
* Add error checking to the minimized dset header size calculation.Jacob Smith2018-12-211-16/+16
| | | | Update printf->HDprintf statements.
* Fix mistake with H5E_BEGIN_TRY {...} H5E_END_TRY block containing ↵Jacob Smith2018-12-201-1/+1
| | | | | | ERROR-raising macros. Formatting tweaks.
* Merge branch 'develop' into dset_ohdr_minimizeJacob Smith2018-12-181-2/+0
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| * Removed H5I_REFERENCE from the library. It has always been unusedDana Robinson2018-12-081-2/+0
| | | | | | | | and has been marked 'deprecated' since 1.10.0. Fixes HDFFV-10252.
* | Reformat to be more consistent with existing code.Jacob Smith2018-12-131-8/+8
| | | | | | | | Fix a few typos.
* | Merge branch 'develop' into dset_ohdr_minimizeJacob Smith2018-12-121-7/+10
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| * VOL FEATUREDana Robinson2018-10-101-0/+2
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| * Develop normalization with vol_integration.Dana Robinson2018-09-191-8/+8
| | | | | | | | | | Mostly peripheral things like the tools and wrappers, with just enough core library code to support that.
* | Incorporate minimized dset ohdr tests into extant suite.Jacob Smith2018-11-191-160/+191
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* Changes made based on feedback from pull request #1039.Vailin Choi2018-05-141-44/+44
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* Fix for HDFFV-10180 Performance issues with H5Oget_info.Vailin Choi2018-04-241-57/+57
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* Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-6/+10
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* Rework of the POSIX file open permissions and macros to clean upDana Robinson2017-04-281-6/+6
| | | | | | HDopen() calls. Also fixed a minor const warning in the core VFD.
* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Final merge of page buffering branch to developQuincey Koziol2017-03-141-0/+2
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* Misc. small cleanups to sync against incoming page buffering changes.Quincey Koziol2017-03-021-1/+1
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* Correct issues from pull request reviews.Quincey Koziol2017-02-281-1/+1
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* Corrected version of 4b5e05c084f93c35dae946c2c9e814d565a613b0:Quincey Koziol2017-02-281-4/+8
| | | | | Fix some more signed -> unsigned value issues with cache data structures, also misc. style cleanups. All to align w/incoming page_buffering changes.
* Revert "Fix some more signed -> unsigned value issues with cache data ↵Quincey Koziol2017-02-281-8/+4
| | | | | | structures, also" This reverts commit 4b5e05c084f93c35dae946c2c9e814d565a613b0.
* Fix some more signed -> unsigned value issues with cache data structures, alsoQuincey Koziol2017-02-231-4/+8
| | | | misc. style cleanups. All to align w/incoming page_buffering changes.
* Cleanups and normalizations against incoming page_buffering changes.Quincey Koziol2017-02-201-2/+1
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* Merge SWMR-related testing to existing tests.Quincey Koziol2016-12-181-2/+99
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* Changes to be committed:Frank.Willmore2016-10-251-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | modified: bittests.c modified: cmpd_dset.c modified: dsets.c modified: dt_arith.c modified: dtypes.c modified: extend.c modified: fillval.c modified: filter_fail.c modified: flush1.c modified: gen_cross.c modified: hyperslab.c modified: istore.c modified: links.c modified: links_env.c modified: objcopy.c modified: plugin.c modified: tcheck_version.c modified: unlink.c modified: unregister.c Minor fixes to replace numeric exit codes with MACRO declarations. Not all codes found were boolean, and those cases were not changed.
* [svn-r30189] Description:Quincey Koziol2016-07-181-1/+0
| | | | | | | | | Clean up more warnings: drop the warning count from ~1310 down to ~940, with only 31 types of warnings in 148 files (down from 38 types in 167 files). Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30151] Fix daily test failures for checkin #30143 for HDFFV-9940.Vailin Choi2016-07-061-3/+3
| | | | Tested on osx1010test, moohan, emu, kituo.
* [svn-r30143] Fix for HDFFV-9940.Vailin Choi2016-07-041-0/+277
| | | | Tested on jam, osx1010test, moohan, platypus, emu, kite, kituo, mayll, ostrich, quail.
* [svn-r29035] Removed external links test from external storage test.Dana Robinson2016-02-021-1/+1
| | | | | | | | This test is duplicated more comprehensively in the links.c file so there is no need to copy it over. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial autotools
* [svn-r28761] Description:Quincey Koziol2016-01-011-18/+39
| | | | | | | | | | | | Clean up many mismatches between malloc/free and H5MM_malloc/H5MM_xfree in the library and tests (and use of H5free_memory and H5Dvlen_reclaim). Also make H5Ocopy use a private version of H5Lexists, which doesn't internally throw (and suppress) errors when an object (or the path to it) isn't found in the destination. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28696] Minor normalization with revise_chunks.Dana Robinson2015-12-171-6/+5
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28138] Add first support for _Bool and make hbool_t a "real" _Bool if ↵Jerome Soumagne2015-10-201-11/+11
| | | | | | | | | | | | | | available Fix tests accordingly and fix misuse of hbool_t in various places Fix initialization of H5Pgcpl/ocpl structs in property decoding routines Tested on: Linux/32 (jam) Linux/64 (platypus) Linux/PPC64 (ostrich) MacOSX/64 10.11
* [svn-r27834] Description:Quincey Koziol2015-09-211-1/+5
| | | | | | | | Close FAPL for external link test, to fix infinite loop closing the library. Tested on: MacOSX/64 10.10.5 (amazon) w/serial (too minor to require h5committest)
* [svn-r27811] Description:Quincey Koziol2015-09-161-10/+4
| | | | | | | | | | | Refactor property list code to "deep copy" properties in the correct way, retraining the rest of the library to copy & release things correctly. This cleans up another batch of memory leaks, etc. within the library. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (h5committest forthcoming)
* [svn-r27768] Description:Quincey Koziol2015-09-141-1/+1
| | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* [svn-r27572] Removed VMS-specific code from the library.Dana Robinson2015-08-241-28/+1
| | | | | | | | | The only remaining code consists of a few floating-point tests that rely on pre-generated and checked-in VMS files. These have been left alone, even though they will not be possible to recreate, since testing VMS float behavior is still important. Tested on: h5committest
* [svn-r27548] Revert r27545Jerome Soumagne2015-08-211-11/+11
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* [svn-r27545] Add first support for _Bool and make hbool_t a "real" _Bool if ↵Jerome Soumagne2015-08-211-11/+11
| | | | | | available Fix tests accordingly
* [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-011-34/+34
| | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* [svn-r26986] Removed H5F_ACC_DEBUG and H5FD_DEBUG functionality.Dana Robinson2015-04-301-4/+0
| | | | | | | | | | | | The H5F_ACC_DEBUG symbol remains but has been defined to zero and has been listed as deprecated. Fixes: HDFFV-1074 Tested on: h5committest 32-bit Linux w/ C++ and Fortran and multi VFD 32-bit Linux w/ C++ and Fortran and multi VFD (no deprec symbols)
* [svn-r26333] Eliminates gcc warnings due to -Wunsuffixed-float-constants.Dana Robinson2015-03-011-1/+1
| | | | | | | | | | | | - Adds 'F' suffixes for most float constants. - A few constants MUST be of type double. These now receive the long double L suffix and are then cast to double. I do this via a new H5_DOUBLE() macro which was added to H5private.h. Fixes: HDFFV-9148 Tested on: h5committest
* [svn-r25994] revert adding the has_mpi_atomicity feature flag and use the ↵Mohamad Chaarawi2015-01-211-1/+2
| | | | | | has_mpi flag instead.
* [svn-r25531] remove use of C99 PRI that failed on windows in dtypes.cMohamad Chaarawi2014-08-111-2/+2
| | | | fix bugs where hid_t were assumed to be 32 bit ints or herr_t.
* [svn-r25500] fix HDFFV-8888 - H5Ldelete_by_idx fails on non-existent group name.Mohamad Chaarawi2014-07-311-0/+6
| | | | tested Jam. minor change.
* [svn-r25496] Description:Quincey Koziol2014-07-301-4/+4
| | | | | | | | | Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r25450] Description:Quincey Koziol2014-07-211-1/+0
| | | | | | | | Initial tweaks to align with VOL branch. Tested on: Mac OSX/64 10.9.3 (amazon) w/gcc 4.9 (h5committest not required, too small)
* [svn-r24864] Description:Quincey Koziol2014-03-211-2/+1
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
* [svn-r24476] Description:Quincey Koziol2013-11-301-2/+4
| | | | | | | | | Remove duplicate "intent" flags from top & shared file structures, leaving them only in the shared file structure. Tested on: Mac OSX/64 10.9.0 (amazon) w/gcc 4.8, both parallel & serial (too minor to require h5committest)
* [svn-r23812] Added the HD prefix to the system functions used in the links.c ↵Allen Byrne2013-06-241-58/+58
| | | | | | file. Tested: local linux
* [svn-r22915] Description:Quincey Koziol2012-10-171-57/+30
| | | | | | | | | | | | | | | | | | | | | | | Bring Coverity changes back to trunk: r20399: Change parse_command_line to free hand structure on error and only "leave()" at end of main. r20400: Purpose: Fix coverity issue 592 Description: Added void cast to call to H5F_sfile_assert_num() in H5F_term)interface(). There is no need to check the return value of this function in general, and there would be nothing to do even if it did fail. r20401: Added free(src_sizes) and free(src_offset). --gh Tested on: Mac OSX/64 10.8.2 (amazon) w/C++, FORTRAN, threadsafe (too minor for h5committest)
* [svn-r21923] Description:Quincey Koziol2012-02-101-106/+106
| | | | | | | | | Add FUNC_ENTER macros for package-private routines and begin process of switching package routines to use them. All H5G routines are currently finished. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
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