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* Fix several warnings (#747)jhendersonHDF2021-06-161-0/+12
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* Removes gratuitous (double)x.yF casts (#632)Dana Robinson2021-05-071-1/+1
| | | | | | | | | * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Update clang config (#473)Quincey Koziol2021-03-171-2/+7
| | | | | | | * Update clang config to put H5E_BEGIN_TRY / H5E_END_TRY on separate lines, empty C++ methods on separate lines, understand that ALL_MEMBERS / UNIQUE_MEMBERS are foreach macros, and properly skip the 'config' directory in the find command without emiting a warning * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixed all clang-tidy bugprone-suspicious-string-compare warnings (#451)Sean McBride2021-03-101-13/+13
| | | | | | | | | * Fixed all clang-tidy bugprone-suspicious-string-compare warnings This change was generated entirely by clang-tidy itself. * Reformat code with clang v10.0.1. Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Update license url (#332)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories.
* develop revert source to clang-format version 11 (#293)Allen Byrne2021-01-291-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction
* Basic alignment with async branch (#115)Quincey Koziol2020-11-231-3/+3
| | | | | | | * Basic alignment with async branch - trivial changes to reduce clutter in overall diff. * Update minor error code to reflect change within library * Update the error output to match library
* HD prefix updates in src/ and test/Dana Robinson2020-10-241-3/+3
| | | | | | | Adds missing HD prefixes to API calls in src and test. Adds some extra processing to bin/checkposix to keep the noise levels down when running the script (not comprehensive).
* Clang-format of source filesAllen Byrne2020-09-301-5204/+8298
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-161-487/+565
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* Small changes from the token_refactoring branch, to reduce the delta to developQuincey Koziol2020-01-041-20/+27
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* Yanked -Wc++-compat from the flags used to build the C library in bothDana Robinson2019-12-041-2/+2
| | | | the Autotools and CMake.
* Make wrappers, tests and tools use H5Treclaim() instead of H5Dvlen_reclaim()Jerome Soumagne2019-10-081-39/+39
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* Fixed some exit calls.Dana Robinson2019-09-071-5/+5
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* Add HD prefix to testsAllen Byrne2019-08-151-7/+7
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* Added the map (H5M) APIDana Robinson2019-08-131-1/+10
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* Cleanup HD prefixAllen Byrne2019-08-051-13/+13
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* Add H5Sselect_shape_same and H5Sselect_intersect_block API routines, alongQuincey Koziol2019-07-301-68/+22
| | | | with tests and minor cleanups and refactorings.
* Updated configure & CMake compiler flags for GCC 8.x, along with correspondingQuincey Koziol2019-06-281-6/+6
| | | | | changes to warnhist script (and some extra improvements for condensing C++ and Java warnings), and fixed a bunch of warnings.
* Fix memory leak in objcopy test after H5Aread of vlen dataJerome Soumagne2019-06-191-1/+27
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* Fix for HDFFV-10800 H5Ocopy failure:Vailin Choi2019-06-121-4/+5
| | | | | The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format version bounds array for fill value message, should be version 3 not 2.
* Merge remote-tracking branch 'origin/develop' into env_vol_loadQuincey Koziol2019-04-031-2/+2
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| * Used the H5_INC_ENUM macro to squash enum value increment warnings.Dana Robinson2019-03-211-2/+2
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* | Specify the default VOL connector to use with an environment variable.Quincey Koziol2019-03-101-1/+1
|/ | | | | | | | This implicitly adds support for changing the VOL connector for command-line tools or any application linked with the library. Also, add 'make check-vol' support for all directories, clearing up necessary issues in testing scripts, etc.
* Align develop with incoming hyperslab_updates branch changes.Quincey Koziol2019-02-131-3/+1
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* Corrected comment in src/H5VLint.c, fixed pass-through info size inQuincey Koziol2019-01-061-1/+1
| | | | | | | src/H5VLpassthru.c, switched to stashing VOL connector ID & info in API context (in src/H5CX.c, src/H5CXprivate.h, src/H5F.c, src/H5Fint.c, and src/H5Fefc.c), patched up all sorts of issues in the tests, to make them work with 'check-vfd' (and 'check-vol' again).
* Squashed commit of private branch changes to support stackable VOL plugins.Quincey Koziol2018-10-251-2/+10
| | | | modified: test/dsets.c
* VOL FEATUREDana Robinson2018-10-101-1/+2
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* Normalization with vol_integration (test code and H5Xtest.c)Dana Robinson2018-09-201-1/+0
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* Changes made based on feedback from pull request #1039.Vailin Choi2018-05-141-81/+81
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* Fix for HDFFV-10180 Performance issues with H5Oget_info.Vailin Choi2018-04-241-83/+83
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* Minor warning cleanup while working on VOL issues.Dana Robinson2018-04-061-1/+0
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* Improving testsBinh-Minh Ribler2018-02-171-2/+2
| | | | | | | | | | | | Description: - Added test for version bounds with nested datatypes - Added script for additional version bound test in h5repack - Cleaned up tests for consistency - Removed extra included header files Platforms tested: Linux/64 (jelly) Linux/64 (moohan) Darwin (osx1010test)
* More includes cleanupAllen Byrne2018-02-141-812/+811
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* Additional testsBinh-Minh Ribler2018-02-131-0/+199
| | | | | | | | | | Description: - Revised and add more variety to version bound tests per review - Revised gen_bounds.c per review Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* Fix for HDFFV-7853 H5Ocopy doesn't work with open identifiersVailin Choi2017-06-111-117/+475
| | | | Changes made so that raw data for dataset objects are copied from cached info when possible instead of flushing objects to file and read them back in again.
* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Misc. small cleanups to sync against incoming page buffering changes.Quincey Koziol2017-03-021-1/+1
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* Merge pull request #100 in HDFFV/hdf5 from ↵Frank Willmore2016-11-031-1/+1
|\ | | | | | | | | | | | | ~FRANK.WILLMORE/hdf5:HDFFV-8882-replace-numeric-exit-code-with to develop * commit '526bcc242d03a6fc4fd28d3a0f68cc31f4f2a850': Changes to be committed: modified: bittests.c modified: cmpd_dset.c modified: dsets.c modified: dt_arith.c modified: dtypes.c modified: extend.c modified: fillval.c modified: filter_fail.c modified: flush1.c modified: gen_cross.c modified: hyperslab.c modified: istore.c modified: links.c modified: links_env.c modified: objcopy.c modified: plugin.c modified: tcheck_version.c modified: unlink.c modified: unregister.c
| * Changes to be committed:Frank.Willmore2016-10-251-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | modified: bittests.c modified: cmpd_dset.c modified: dsets.c modified: dt_arith.c modified: dtypes.c modified: extend.c modified: fillval.c modified: filter_fail.c modified: flush1.c modified: gen_cross.c modified: hyperslab.c modified: istore.c modified: links.c modified: links_env.c modified: objcopy.c modified: plugin.c modified: tcheck_version.c modified: unlink.c modified: unregister.c Minor fixes to replace numeric exit codes with MACRO declarations. Not all codes found were boolean, and those cases were not changed.
* | Uncomment line in test/objcopy.c, clean up whitespace and POSIX call wrappingQuincey Koziol2016-11-031-1/+1
|/ | | | in tools code.
* [svn-r30308] Fix for HDFFV-7991--error when copying dataset with attribute ↵Vailin Choi2016-08-191-2/+317
| | | | | | | which is a compound datatype consisting of a variable length string. Tested on mayll, platypus, osx1010test, emu, kituo, kite, quail, moohan, ostrich.
* [svn-r30238] Follow-on to HDFFV-9928: remove unconditional call of time.h ↵Allen Byrne2016-08-011-1/+0
| | | | type headers. Also remove duplicated includes when h5private.h is used.
* [svn-r29770] Description:Quincey Koziol2016-04-231-6/+6
| | | | | | | | Bring 'none' chunk index from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd) (h5committest forthcoming)
* [svn-r29738] Description:Quincey Koziol2016-04-191-11/+11
| | | | | | | | Bring "single" chunk index from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd) (h5committest forthcoming)
* [svn-r29718] Description:Quincey Koziol2016-04-161-3/+938
| | | | | | | | Bring changes from revise_chunks branch to trunk Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel, and production (h5committest forthcoming)
* [svn-r29612] Description:Quincey Koziol2016-04-031-38/+1
| | | | | | | | | Bring updated layout and EFL property comparisons and new "latest format" flags from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29607] Description:Quincey Koziol2016-04-021-0/+141
| | | | | | | | | Bring "don't filter partial edge chunks" capability from revise_chunks to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/debug, production & parallel (h5committest forthcoming)
* [svn-r28972] Removed option to clear file buffers from autotools, CMake, and ↵Dana Robinson2016-01-261-2/+0
| | | | | | | | | | | | library. Buffers that will be written to disk will now always be cleared since not doing this has huge security implications. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0, x86_64) gcc 5.2.1 serial autotools parallel autotools (MPICH 3.1.4) serial CMake
* [svn-r28761] Description:Quincey Koziol2016-01-011-18/+132
| | | | | | | | | | | | Clean up many mismatches between malloc/free and H5MM_malloc/H5MM_xfree in the library and tests (and use of H5free_memory and H5Dvlen_reclaim). Also make H5Ocopy use a private version of H5Lexists, which doesn't internally throw (and suppress) errors when an object (or the path to it) isn't found in the destination. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
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