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* Purged the unused H5I_REFERENCE from the library.Dana Robinson2017-07-011-1/+0
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* Merge branch 'develop' into windows_openDana Robinson2017-05-311-3/+3
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| * A few more warnings fixed.Dana Robinson2017-05-251-3/+3
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* | Rework of the POSIX file open permissions and macros to clean upDana Robinson2017-04-281-4/+4
| | | | | | | | | | | | HDopen() calls. Also fixed a minor const warning in the core VFD.
* | Changed the Windows POSIX open() file permissions to be correctDana Robinson2017-04-281-6/+6
|/ | | | according to MSDN. Partial fix for HDFFV-9630.
* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Correct double sourcedir name on copied datafiles.Quincey Koziol2017-03-151-6/+2
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* Final merge of page buffering branch to developQuincey Koziol2017-03-141-435/+1639
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* Cleanups and normalizations against incoming page_buffering changes.Quincey Koziol2017-02-201-61/+62
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* Merge SWMR-related testing to existing tests.Quincey Koziol2016-12-181-2/+4
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* Bring SWMR support in to the main development branch. (Finally!) More testsQuincey Koziol2016-12-021-64/+77
| | | | and the tool and API wrappers will be coming in over the weekend.
* Added vlen reclaim functions to a test in tfile.cDana Robinson2016-11-231-2/+8
| | | | that leaks memory.
* [svn-r30285] Description:Quincey Koziol2016-08-131-9/+10
| | | | | | | | | More warning cleanups, bringing the build down to 25 unique types of warnings, with 550 warnings in 122 files (down from 28, 770, and 134). Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29975] Description:Quincey Koziol2016-05-301-5/+5
| | | | | | | | | | Bring r29909 from revise_chunks to trunk: Cleaned up "conflicts with C++ keyword" warnings. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29776] Description:Quincey Koziol2016-04-241-0/+352
| | | | | | | | Bring "file pointer patching" code & test from revise_chunks to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29545] Minor normalization w/ trunk in preparation for big merge.Dana Robinson2016-03-241-2/+4
| | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial autotools parallel (MPICH 3.1.4)
* [svn-r29183] Fixed missing reopen test call in tfile from HDFFV-8740 fix.Dana Robinson2016-02-221-0/+1
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ fortran and C++
* [svn-r29182] Re-commit of HDFFV-8740 fix, which adds the ability to configureDana Robinson2016-02-221-2/+58
| | | | | | | | | | | | external dataset storage path behavior. This check-in fixes a bug in the original check-in where the external path stored in the file struct was not copied on reopen causing subsequent dataset operations to fail. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ fortran and C++ autotools parallel (MPICH 3.1.4) w/ fortran
* [svn-r28792] Added cleanup for new test files to tfile.c.Dana Robinson2016-01-041-0/+2
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28138] Add first support for _Bool and make hbool_t a "real" _Bool if ↵Jerome Soumagne2015-10-201-3/+3
| | | | | | | | | | | | | | available Fix tests accordingly and fix misuse of hbool_t in various places Fix initialization of H5Pgcpl/ocpl structs in property decoding routines Tested on: Linux/32 (jam) Linux/64 (platypus) Linux/PPC64 (ostrich) MacOSX/64 10.11
* [svn-r27811] Description:Quincey Koziol2015-09-161-3/+5
| | | | | | | | | | | Refactor property list code to "deep copy" properties in the correct way, retraining the rest of the library to copy & release things correctly. This cleans up another batch of memory leaks, etc. within the library. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (h5committest forthcoming)
* [svn-r27768] Description:Quincey Koziol2015-09-141-7/+7
| | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* [svn-r27626] Various minor warning fixes before major SWMR and VDS merges.Dana Robinson2015-08-311-47/+63
| | | | | | | | | | | gcc 4.9.2 was used to create the warning list - implicit casts - shadowed variables - various enum issues - other minor fixes (comments, unused macros, etc.) Tested on: h5committest
* [svn-r27572] Removed VMS-specific code from the library.Dana Robinson2015-08-241-13/+1
| | | | | | | | | The only remaining code consists of a few floating-point tests that rely on pre-generated and checked-in VMS files. These have been left alone, even though they will not be possible to recreate, since testing VMS float behavior is still important. Tested on: h5committest
* [svn-r27548] Revert r27545Jerome Soumagne2015-08-211-3/+3
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* [svn-r27545] Add first support for _Bool and make hbool_t a "real" _Bool if ↵Jerome Soumagne2015-08-211-3/+3
| | | | | | available Fix tests accordingly
* [svn-r26333] Eliminates gcc warnings due to -Wunsuffixed-float-constants.Dana Robinson2015-03-011-2/+2
| | | | | | | | | | | | - Adds 'F' suffixes for most float constants. - A few constants MUST be of type double. These now receive the long double L suffix and are then cast to double. I do this via a new H5_DOUBLE() macro which was added to H5private.h. Fixes: HDFFV-9148 Tested on: h5committest
* [svn-r26225] Removes broken open() call work-around that was specific to the nowDana Robinson2015-02-191-2/+0
| | | | | | | | | | unsupported Code Warrior compiler. Also removes the H5_NO_SHARED_WRITING symbol from the pubconf file. Fixes: HDFFV-9080 Tested on: jam only, after bin/reconfigure (all platforms should see no source changes)
* [svn-r25496] Description:Quincey Koziol2014-07-301-10/+10
| | | | | | | | | Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r24360] Jira issue 8528: H5Fget_obj_ids overfilled the list of object ↵Raymond Lu2013-10-251-0/+34
| | | | | | | | | IDs by one. This is the second round of checkin after receiving review comments from people. I put the safeguard in both H5F_get_objects and H5F_get_objects_cb to prevent overfill the list. tested with h5committest.
* [svn-r24234] Bug: tfile.c was failing in the ADA AIX system.Albert Cheng2013-09-301-1/+1
| | | | | | | | | The reason was typo in the index variable in the newly added test_get_obj_ids(). Solution: fixed the typo. Tested: AIX machine. (Did not run h5committest because the fix is in a remote machine and the fix is quite obvious.)
* [svn-r24210] Jira issue 8528: H5Fget_obj_ids overfilled the list of object ↵Raymond Lu2013-09-271-0/+97
| | | | | | | | | IDs by one. I moved the safeguard in H5F_get_objects_cb to the beginning of the function to prevent overfill the list. I added a new test case for this problem and fix in tfile.c. Tested with h5committest.
* [svn-r23354] Close prop list varAllen Byrne2013-03-151-4/+8
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* [svn-r23322] HDFFV-8322: Close resources, found from valgrind testingAllen Byrne2013-03-011-1/+10
| | | | Tested: local linux
* [svn-r22676] Changes needed to make the default free-list mapping from ↵Vailin Choi2012-08-131-3/+9
| | | | H5FD_FLMAP_SINGLE to H5FD_FLMAP_DICHOTOMY.
* [svn-r21904] This is a followup commit for Issue 7756 - Creating a dataset ↵Raymond Lu2012-02-021-3/+3
| | | | | | in a read-only file caused seg fault when the file is closed. I changed the error ID from H5E_CACHE to H5E_OHDR in the error report macro in H5O_create and fixed a minor problem in tfile.c. Tested on jam and MacGoblin - minor changes.
* [svn-r21891] Issue 7756 - Creating a dataset in a read-only file caused seg ↵Raymond Lu2012-01-251-0/+74
| | | | | | fault when the file is closed. I fixed the problem by putting a condition check early in H5O_create of H5O.c. The old code checked it too late, not until a file space is created. I added a test case in tfile.c to check the creation of group, dataset, attribute, and datatype. Tested on koala, jam, and linew.
* [svn-r21564] Improve testing for H5Pset_libver_bounds (bring in line with ↵Neil Fortner2011-10-141-23/+41
| | | | | | 1.8 branch) Tested: durandal (too minor for full h5committest)
* [svn-r21562] Improve testing for H5Pset_libver_boundsNeil Fortner2011-10-141-2/+34
| | | | Tested: durandal (too minor for full h5committest)
* [svn-r20262] In my previous checkin (20255), I used H5Gcreate instead of ↵Raymond Lu2011-03-161-1/+1
| | | | | | | | H5Gcreate2 in my test. I just corrected it . Tested on jam.
* [svn-r20255] Bug 2115 - add H5_VERSION_GE and H5_VERSION_LE macros. I added ↵Raymond Lu2011-03-151-1/+68
| | | | | | a new test case to show how to use them. Tested on jam and amani.
* [svn-r20180] I added 2 public macros to the H5public.h - H5_VERSION_GE and ↵Raymond Lu2011-03-021-0/+49
| | | | | | H5_VERSION_LE - and put some test cases in tfile.c. Tested on jam, heiwa, and amani.
* [svn-r19402] Description:Quincey Koziol2010-09-161-0/+61
| | | | | | | | | | | | | | | | | | | | | | | | | Correct Bz#1968 (Problem when opening new format file with H5F_LIBVER_EARLIEST) by initializing symbol table leaf information in a more universal way. Also cleaned up other superblock initialization a little bit while I'm here. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.4 (amazon) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
* [svn-r18419] Description:Quincey Koziol2010-03-181-0/+1
| | | | | | | | | Clean up srcdir querying code more, extracting it into single header file, to avoid compiler warnings. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & prod Linux/32 2.6 (jam)
* [svn-r18413] Description:Quincey Koziol2010-03-171-9/+1
| | | | | | | | | | | | | | Unify srcdir handling for test executables and allow them to use the srcdir setting from configure time without requiring the 'srcdir' environment variable be set (although you still can, to override the built in setting). Attempted to get this right for Windows builds also. Also add dependency between src/H5Tinit.c and src/libhdf5.settings, so that the test/testcheck_version.sh script works correctly. Tested on: Linux/32 2.6 (jam) Mac OS X/32 10.6.2 (amazon)
* [svn-r18224] Description:Quincey Koziol2010-02-091-36/+36
| | | | | | | | | | | | | | | | | | | | | Bring revisions from Coverity session from hdf5_1_8_coverity branch to trunk: r18214: Issue 423: cache_ptr was not initialized. if global 'pass' was false, cache_ptr could be used. Extended scope of if(pass) block to include whole function-flush_cache(). r18215: Fix coverity item 317. Removed unreachable code in H5B2_hdr_alloc. r18216: Fixed Coverity issues 57 & 67. Checked oid_count > 0 before memory allocation and oid_list != NULL before dereferencing. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & production (daily tested on Coverity branch already)
* [svn-r18197] Description:Quincey Koziol2010-01-301-10/+10
| | | | | | | | | Trim trailing whitespace from source code files with this command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - eyeballed only
* [svn-r17626] Description:Quincey Koziol2009-10-091-2/+2
| | | | | | | | | | Correct error with initializing test file name in non-srcdir situation (like Windows) Tested on: Mac OS X/32 10.6.1 (amazon) FreeBSD/32 6.3 (duty) Windows
* [svn-r17582] Description:Quincey Koziol2009-10-021-0/+705
| | | | | | | | | | | | | | | | | | | | | Bring changes from file free space branch back to the trunk. *yay!* Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17524] Description:Quincey Koziol2009-09-241-54/+46
| | | | | | | | Switch to using system call wrapper macros instead of "raw" system calls. Tested on: Mac OS X/32 10.5.8 (amazon) w/debug & production (too minor to require h5committest)
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