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* [svn-r14120] Description:Quincey Koziol2007-08-281-6/+6
| | | | | | | | | | | | Move H5Glink2 to deprecated routines section. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14115] Description:Quincey Koziol2007-08-281-48/+48
| | | | | | | | | | | | | | | | | Remove all plain calls to H5Gopen() from source, replacing them with either H5Gopen2(). Add test for H5Gopen1(). Reformatted several pieces of code, to clean them up. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14104] Description:Quincey Koziol2007-08-231-33/+33
| | | | | | | | | | | | | Pursue calls to H5Gcreate() relentlessly and ruthlessly exterminate them, leaving only a few tame specimens in text files and comments. ;-) Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew)
* [svn-r14082] Description:Quincey Koziol2007-08-141-2/+149
| | | | | | | | | Fix bug with moving object header messages forward into null messages of exactly the same size and located in an object header chunk with a gap. (Exposed by netCDF-4 test) Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13879] Purpose:HDF Tester2007-06-191-1/+1
| | | | | | | | | | | | Bug fix. Description: Test test_misc25b() open an existing test data file with RDWR unnecessarily. (This was discovered during read-only test.) Changed file open mode to RDONLY. Tested platform: Kagiso (readonly) only since it is a trivial change.
* [svn-r13636] Description:Quincey Koziol2007-04-111-78/+33
| | | | | | | | | | | | | | Change H5[D|G|T]<foo>_expand() "temporary" API routines to H5[D|G|T]<foo>2() "versioned" routines. Also added H5[D|G|T](create|commit)_anon() routines to continue to allow "anonymous" objects to be created in a file. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13512] Correct the typos where some "=="s should be "!="s.Raymond Lu2007-03-141-8/+8
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* [svn-r13501] Suppress the compiler warning about the equality comparison of ↵Raymond Lu2007-03-121-8/+8
| | | | floating-point values.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13151] Description:Quincey Koziol2007-01-171-2/+2
| | | | | | | | Clean up compiler warnings, esp. on Windows Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13113] Refactoring. Cleaned up code, added a few sanity checks.James Laird2007-01-051-1/+0
| | | | | | Extracted duplicated code into functions. Tested on Windows, juniper, and kagiso. Will test on copper next.
* [svn-r13085] Yesterday's checkin wasn't a complete fix for copying filters ↵James Laird2006-12-211-7/+53
| | | | | | | | in DCPLs. Extended the test so it broke again and then fixed it again. Tested on kagiso.
* [svn-r13084] Fixed a bug that occurrs when copying DCPLs with filters that ↵James Laird2006-12-201-0/+43
| | | | | | | | | | have filter data. Added a regression test for this bug. Tested on kagiso.
* [svn-r13004] Much improved shared object header message test, along with ↵James Laird2006-12-011-2/+2
| | | | | | | | | | | some bug fixes to make the test pass. These changes involve changes to the file format of SOHMs, but that's okay because nobody should have been using SOHMs yet anyway. Tested on Windows, kagiso, copper, and heping
* [svn-r12935] Added list-to-btree conversion, changed SOHM apis, and pushed ↵James Laird2006-11-171-9/+9
| | | | | | | | | | | SOHM table version and size information into the superblock to eliminate a read when loading it. This is a file format change, and hopefully the last one (knock on wood). Tested on kagiso and Windows (mostly just a SOHM change).
* [svn-r12902] Checkin of Shared Object Header Message work.James Laird2006-11-131-8/+18
| | | | | | | | | | | | This feature is still in progress; Shared Object Header Messages are not complete as a feature and are not thoroughly tested. There are still "TODO" comments in the code (comments with the word "JAMES" in them, so as not to be confused with other TODO comments). Hopefully this checkin will reduce the liklihood of conflicts as I finish implementing this feature. All current tests pass on juniper, copper (parallel), heping, kagiso, and mir.
* [svn-r12829] Description:Quincey Koziol2006-10-301-52/+52
| | | | | | | | Clean up more compiler warnings, esp. on Linux/64 platform. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12700] Alert:Quincey Koziol2006-10-021-7/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | File format is not stable, don't keep files produced! Description: First stage of checkins modifying the format of groups to support creation order. Implement "dense" storage for links in groups. Try to clarify some of the symbols for the H5L API. Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest file format options (including "dense" link storage in groups) Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation order tracking in groups (although no index on creation order yet). Remove --enable-group-revision configure flag, as file format issues are now handled in a backwardly/forwardly compatible way. Clean up lots of compiler warnings and other minor formatting issues. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 compa Mac OSX/32 10.4.8 (amazon) AIX 5.3 (copper) w/parallel & FORTRAN
* [svn-r12528] Added User-Defined links to the library.James Laird2006-08-021-23/+27
| | | | | | | | | | | | | | Users can create external links using H5L_create_external(). These links point to an object in another HDF5 file. Users can alter the behavior of external links or create new kinds of links by registering callbacks using the H5L interface. Added tests, tools support, etc. Also a number of other, minor changes have been made (some restructuring of the H5L interface, for instance). Additional documentation and examples are forthcoming.
* [svn-r12465] Add regression test to check that the library handles files ↵Quincey Koziol2006-07-141-47/+94
| | | | | | | | with merged object header messages properly. Too minor to require h5committest
* [svn-r12452] Purpose:James Laird2006-07-051-23/+66
| | | | | | | | | | | | | | | | | | | | | | Feature Description: Revised Link APIs. Solution: New link APIs use H5L* H5*create_expand do not create links to the objects created; this must be done manually with H5Llink. Added APIs to link an object given its ID (H5Llink), to copy links (H5Lcopy), and changed creation APIs (H5Lcreate_hard and H5Lcreate_soft) and query API (H5Lget_linkinfo instead of H5Gget_objinfo). All old APIs are still supported in H5Gdeprec.c . Platforms tested: sol, mir, copper Misc. update: Forgot to update MANIFEST and release docs. Will do after checkin.
* [svn-r12414] Purpose:Quincey Koziol2006-06-171-0/+320
| | | | | | | | | | | | | | | | | Bug fix Description: Fix bug which could lead to files with incorrect count of messages in the header for an object. The exact sequence of operations is complicated and is described in the release notes. Solution: Mark merged null header messages as dirty. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Mac OS/X (amazon)
* [svn-r12254] Purpose:Quincey Koziol2006-04-141-30/+30
| | | | | | | | | | | | | | Anti-feature Description: Revert changes to H5G_stat_t struct, to make it compatible with the 1.6.x branch again. The information that was added to the H5G_stat_t struct will be reported through other API routines. Platforms tested: FreeBSD 4.11 (sleipnir) w/C++ Linux 2.4/64 (mir) w/C++ & Fortran Solaris 2.9 (shanti)
* [svn-r12221] Purpose:Quincey Koziol2006-04-101-0/+4
| | | | | | | | | | | | | | | "Hide" file format changes (for now) Description: Add ifdef's (controlled by the --enable-group-revision configure flag) to disable group revision changes to the file format, in order to allow alpha release to go ahead without releasing an unsupported version into the wild. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 32-bit (heping) Linux 2.4 64-bit (mir) Solaris 2.9 (shanti)
* [svn-r12128] Purpose:Quincey Koziol2006-03-221-3/+3
| | | | | | | | | | | Code cleanup Description: Clean up some compiler warnings (esp. those flagged on Windows builds) Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11901] Purpose:Quincey Koziol2006-01-281-0/+82
| | | | | | | | | | | | | | Bug fix/additional tests Description: Add additional tests for holding open an object of a given type (dataset, group, etc) while incorrectly trying to open that object with a different type of API routine (i.e. using the group open call on a dataset, etc.) Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11712] Purpose:Quincey Koziol2005-11-151-6/+188
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | New feature Description: Check in baseline for compact group revisions, which radically revises the source code for managing groups and object headers. WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! This initiates the "unstable" phase of the 1.7.x branch, leading up to the 1.8.0 release. Please test this code, but do _NOT_ keep files created with it - the format will change again before the release and you will not be able to read your old files!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! Solution: There's too many changes to really describe them all, but some of them include: - Stop abusing the H5G_entry_t structure and split it into two separate structures for non-symbol table node use within the library: H5O_loc_t for object locations in a file and H5G_name_t to store the path to an opened object. H5G_entry_t is now only used for storing symbol table entries on disk. - Retire H5G_namei() in favor of a more general mechanism for traversing group paths and issuing callbacks on objects located. This gets us out of the business of hacking H5G_namei() for new features, generally. - Revised H5O* routines to take a H5O_loc_t instead of H5G_entry_t - Lots more... Platforms tested: h5committested and maybe another dozen configurations.... :-)
* [svn-r11386] Purpose:Quincey Koziol2005-09-121-5/+5
| | | | | | | | | | | | | | Code cleanup/reorganization Description: Merge back some more changes extracted from the "compact group" set. This bunch cleans up and prepares the H5G_* routines for eventual import of new features. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 Mac OS X.4
* [svn-r11307] Purpose:Quincey Koziol2005-08-291-0/+19
| | | | | | | | | | | | Code cleanup Description: Clean up internals of group creation & iteration code. Platforms tested: FreeBSD 4.11 (sleipnir) Mac OS X (nile) Too minor to require h5committest
* [svn-r11304] Purpose:Quincey Koziol2005-08-271-16/+16
| | | | | | | | | | | | | Code cleanup (sorta) Description: Adjust H5G_stat_t to prepare for eventual "external link" information. This also puts the information for regular objects and soft links into more obviously separate places. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-101/+101
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10958] Purpose:Quincey Koziol2005-06-201-1/+239
| | | | | | | | | | | | | New feature Description: Add group creation & access property lists, dataset access property lists and named datatype creation & access property lists. Currently have <foo>_extend() API names, which will need to be changed for the final release. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (heping)
* [svn-r9727] Purpose:Quincey Koziol2004-12-291-17/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9608] Purpose:Albert Cheng2004-12-011-0/+2
| | | | | | | Added comment of the fix. Platforms tested: only tested in heping as it is only a comment added.
* [svn-r9603] Purpose:Quincey Koziol2004-11-301-1/+1
| | | | | | | | | | | | | | | | Bug fix Description: Correct integer overflow situation for computing the size of a dataset. Solution: Rachet one of the dimensions down far enough that the total size of the dataset's raw data doesn't overflow a 64-bit int. Platforms tested: FreeBSD 4.10 (sleipnir) IRIX 6.? (tesla) w/-n32 Too minor to require h5committest
* [svn-r9494] Purpose:Robert E. McGrath2004-11-021-6/+10
| | | | | | | | | | | | Fix SZIP filter to dynmically detect encoder. Description: Solution: See: http://hdf.ncsa.uiuc.edu/RFC/SZIP/Szip_dynamic_12_Oct.pdf Changes to library tests, contingent on detecting SZIP encoder.
* [svn-r9073] Purpose: bug fixRaymond Lu2004-08-121-1/+1
| | | | | | | | | | Description: The test tried to read a dataset of H5T_STD_I32LE type and verify with the size of H5T_NATIVE_INT in function test_misc20(). This will fail on some machines like Crays where the size of H5T_NATIVE_INT is 8 bytes. Solution: Changed from H5T_NATIVE_INT to H5T_STD_I32LE. Platforms tested: Crays - very simple change.
* [svn-r9016] Purpose:Quincey Koziol2004-08-051-9/+10
| | | | | | | | | | | Code cleanup Description: Clean up ifdef's and close leaked ID. Platforms tested: FreeBSD 4.10 (sleipnir) Too minor to require h5committest
* [svn-r9014] Elena Pourmal2004-08-041-6/+9
| | | | | | | | | | | | | | | | Purpose: Small bug fix Description: When SZIP filter is present but encoding is not enabled test_misc21 and h5repack tests failed. Solution: Those tests should not run in this situation at all. Used conditonal compilation to disable the tests. Platforms tested: sol (today I will enable the daily tests with the szip library that doesn't have encoder for few other platforms) Misc. update:
* [svn-r9010] Purpose:Robert E. McGrath2004-08-041-1/+159
| | | | | | | | | | | | | Tests for SzIP n-bit precision (and other dt's) Description: See earlier checkins Solution: Platforms tested: Misc. update:
* [svn-r8969] Purpose:Quincey Koziol2004-07-301-5/+7
| | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: Address two problems: - The computation of the scanline in the szip filter was being performed in the "can apply" callback routine instead of the "set local" routine. - The routine which allocated all the chunks for an entire dataset (which is invoked when the allocation time is early or late, rather than incremental) wasn't recording a failed filter in the information for the chunk, causing the library to believe that the chunk had the filter applied when it really hadn't. Solution: - Move the scanline computation to the "set local" callback. - Record the filter mask with each chunk created when allocating them. Platforms tested: FreeBSD 4.10 (sleipnir) w/szip Too obscure to require h5committest
* [svn-r8960] Purpose:Quincey Koziol2004-07-281-0/+1
| | | | | | | | | | | Bug fix Description: Clean up new testfile from earlier checkin. Platforms tested: FreeBSD 4.10 (sleipnir) Too minor to require h5committest
* [svn-r8958] Purpose:Quincey Koziol2004-07-271-1/+78
| | | | | | | | | | | | | Bug fix Description: Always write fill values to chunks when initializing entire B-tree and any filters are defined. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r8614] Purpose:Quincey Koziol2004-06-051-2/+5
| | | | | | | | | | | | | | | Refactor code Description: Move chunk and contiguous cached raw data from file information to dataset information. This simplifies a number of internal interfaces, aligns the code with it's purpose better and should allow more optimizations to the chunked data I/O performance. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) h5committest
* [svn-r8600] Purpose:Quincey Koziol2004-05-311-2/+2
| | | | | | | | | | | | | Code optimization Description: Don't recompute the internal index value for looking up the chunk in the hash table, just use the value already computed from iterating through the chunks. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) w/parallel
* [svn-r8590] Purpose:Quincey Koziol2004-05-271-0/+189
| | | | | | | | | | | | | | | | | | | | | Code optimization & bug fix Description: When dimension information is being stored in the storage layout message on disk, it is stored as 32-bit quantities, possibly truncating the dimension information, if a dimension is greater than 32-bits in size. Solution: Fix the storage layout message problem by revising file format to not store dimension information, since it is already available in the dataspace. Also revise the storage layout data structures to be more compartmentalized for the information for contiguous, chunked and compact storage. Platforms tested: FreeBSD 4.9 (sleipnir) w/parallel Solaris 2.7 (arabica) h5committest
* [svn-r8331] Purpose: Last step of check-in for Null dataspaceRaymond Lu2004-04-081-82/+0
| | | | | | | | | | | | Description: Mainly are header message changes for dataspace. In last round of check-in, a new header message for dataspace to created, which is not a good way. Now, there will be no new message for dataspace, but just add the type of dataspace in the message while increment its version number. Backward compatibility is addressed. The attribute design is modified accordingly. Took out Null dataspace test from tmisc.c and put it in th5s.c. Platforms tested: h5committest
* [svn-r8315] *** empty log message ***Raymond Lu2004-04-061-2/+84
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* [svn-r8048] Purpose:Quincey Koziol2004-01-101-112/+58
| | | | | | | | | | | | | Code cleanup & reorganization Description: Move further in the testing framework cleanup, eliminating all the global variables (moving them into testframe.c as static variables) from the testing framework code and moving it into the libh5test.a. Platforms tested: FreeBSD 4.9 (sleipnir) w & w/o thread-safety, c++ & parallel h5committested
* [svn-r7932] Purpose:Quincey Koziol2003-12-111-2/+439
| | | | | | | | | | | Add new feature Description: Add new H5I{dec|get|inc}_ref() routines and tests for them. Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
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