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Bug Fix for bug #789
Description:
Creating a 1-D dataset region reference caused the library to hang (go into
an infinite loop).
Solution:
Corrected algorithm for serializing hyperslab regions.
Platforms tested:
FreeBSD 4.5 (sleipnir)
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Bug Fix.
Description:
The H5Rget_object_type function could not get the object type for dataset
region references.
Solution:
Added a new function, H5Rget_obj_type, to replace H5Rget_object_type.
The new function requires the reference type as an additional parameter,
in order to allow queries on different reference types to be performed
correctly.
Platforms tested:
FreeBSD 4.4. (sleipnir)
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Code cleanup
Description:
Windows is generating hundreds of warnings from some of the practices in
the library. Mostly, they are because size_t is 32-bit and hsize_t is
64-bit on Windows and we were carelessly casting the larger values down to
the smaller ones without checking for overflow.
Also, some other small code cleanups,etc.
Solution:
Re-worked some algorithms to eliminate the casts and also added more
overflow checking for assignments and function parameters which needed
casts.
Kent did most of the work, I just went over his changes and fit them into
the the library code a bit better.
Platforms tested:
FreeBSD 4.4 (hawkwind)
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Code cleanup (sorta)
Description:
When the first versions of the HDF5 library were designed, I remembered
vividly the difficulties of porting code from a 32-bit platform to a 16-bit
platform and asked that people use intn & uintn instead of int & unsigned
int, respectively. However, in hindsight, this was overkill and
unnecessary since we weren't going to be porting the HDF5 library to
16-bit architectures.
Currently, the extra uintn & intn typedefs are causing problems for users
who'd like to include both the HDF5 and HDF4 header files in one source
module (like Kent's h4toh5 library).
Solution:
Changed the uintn & intn's to unsigned and int's respectively.
Platforms tested:
FreeBSD 4.4 (hawkwind)
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Update
Description:
Changed includes of the form:
#include <hdf5_file.h>
to
#include "hdf5_file.h"
so that gcc can pick them up easier without including the system
header files since we don't care about them.
Platforms tested:
Linux
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Bug fix (sort of)
Description:
The RCSID string in H5public.h was causing the C++ code problem as it
was included multiple times and C++ did not like multiple definitions
of the same static variable.
Solution:
Since we don't really make use of the RCSID strings as we have not
installed it in all source files, we decided to remove it.
Platforms tested:
eirene (linux), modi4 (IRIX64-64) both serial and parallel modes.
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Code cleanup.
Description:
Fixed _lots_ (I mean _tons_) of warnings spit out by the gcc with the
extra warnings. Including a few show-stoppers for compression on IRIX
machines.
Solution:
Changed lots of variables' types to more sensible and consistent types,
more range-checking, more variable typecasts, etc.
Platforms tested:
FreeBSD 4.2 (hawkwind), IRIX64-64 (modi4)
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Additional testing.
Description:
Verify that calling H5Rget_obj_type with a region reference fails.
Platforms tested:
FreeBSD 4.1.1 (hawkwind)
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Bug fix.
Description:
Previously, it has been possible to dereference deleted objects in a file.
Obviously, this is incorrect and could cause all sorts of problems if the
object being dereferenced had been partially over-written with other
information. - This is documented in Bug #493.
Solution:
Check the link count for objects being dereferenced and don't allow any
objects with link counts of zero to be dereferenced.
This fixes bug #493.
Platforms tested:
FreeBSD 4.1.1 (hawkwind)
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instead of 36 1x1
hyperslabs.
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----------------------
./tools/h5ls.c
./tools/h5tools.c
Added support for printing bitfields and opaque data.
./test/dsets.c
Added bitfield and opaque datasets to the output file so h5ls
has something interesting to print.
./test/trefer.c
Resync'd
./src/H5Tconv.c
Fixed bitfield conversion which resulted in possible garbage
in high-order bits of destination when the destination type is
larger than the source type. Thanks for spotting it, Quincey.
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----------------------
./tools/h5tools.c
Finished code which prints references (object and dataset
region). Patrick, if you tell me how h5dump should (or might
want to) print references I can make some changes to support
various formats...
You can try it out with:
cd test
env HDF5_NOCLEANUP=yes ./testhdf5
../tools/h5ls -dvr trefer1.h5
../tools/h5ls -dvr trefer2.h5
(run h5ls with no arguments if you forgot what the switches do)
./test/trefer.c
Call calloc instead of malloc in one place to prevent
uninitialized data from being written into the file.
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----------------------
./doc/html/Datatypes.html
./test/dtypes.c
Added documentation and tests for opaque types.
./tools/h5ls.c
Added a `-x' or `--hexdump' argument which is not fully
implemented (because I want to synchronize h5tools.c first)
but which will eventually print raw data in hexadecimal format
without any translation from disk. This would be useful for
debugging references and VL types.
./tools/h5tools.c
Added support for references (not quite finished yet, but
compiles -- I wanted to sync up this file before Patrick and I
got too far apart...)
./src/H5R.c
Checked for error return value from H5R_get_object_type()
./src/H5A.c
./src/H5D.c
Changed error return values from NULL to FAIL
./test/Makefile.in
./test/trefer.c
Creates trefer1.h5 and trefer2.h5 so that the second test
doesn't clobber the first file since the files might be useful
for debugging.
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API functions.
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assertion failure
in the H5HG code for Robb to look at.
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----------------------
./INSTALL.parallel [NEW]
We're beginning to unify some of the parallel installation
steps. This file will contain general information for
installing the parallel library. It's not complete yet.
./configure.in
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
Check for xdr_int() in libnsl required on Solaris when linking
with hdf4. It's found on the Irix system I tested which
complains that `-lnsl' didn't resolve any symbols. Oh well.
Fixed the order of searching for libdf and libmfhdf for hdf4
linking.
./configure.in
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
./src/H5Z.c
Check for compress() in libz in order to find older versions
of the library that will still work for hdf4. Added a
separate check for compress2() that hdf5 will use.
./configure.in
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
./src/H5.c
./src/H5private.h
./src/H5A.c
./src/H5B.c
./src/H5Bprivate.h
./src/H5D.c
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fmpio.c
./src/H5Fprivate.h
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5HG.c
./src/H5HL.c
./src/H5O.c
./src/H5Oattr.c
./src/H5Ocomp.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Ofill.c
./src/H5Olayout.c
./src/H5Omtime.c
./src/H5Oname.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5R.c
./src/H5RA.c
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Snone.c
./src/H5Spoint.c
./src/H5Sprivate.h
./src/H5Sselect.c
./src/H5T.c
./src/H5Tbit.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5V.c
./test/bittests.c
./test/gheap.c
./test/hyperslab.c
./test/istore.c
./test/tmeta.c
./test/trefer.c
./test/tselect.c
./tools/h5debug.c
./tools/h5tols.c
Added checks for Posix.1g types like `int8_t'. If not defined
then H5private.h defines them. Changed all `int8' etc. to
`int8_t'.
./src/H5A.c
./src/H5D.c
./src/H5F.c
./src/H5G.c
./src/H5I.c
./src/H5P.c
./src/H5R.c
./src/H5RA.c
./src/H5S.c
./src/H5T.c
./src/H5TB.c
./src/H5Z.c
Calling H5*_term_interface() resets interface_initialize_g to
FALSE so a subsequent call to H5open() (implied or explicit)
reinitializes global variables properly.
./src/H5private.h
./src/H5Oefl.c
./src/H5S.c
Changed MAX_SIZET, MAX_SSIZET, MAX_HSIZET, and MAX_HSSIZET to
SIZET_MAX, SSIZET_MAX, HSIZET_MAX, and HSSIZE_MAX to they
match the Posix.1 constants in <limits.h>.
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tprivate.h
./src/H5detect.c
Added 36 more integer hardware conversion functions to the
type conversion table for conversions to/from `long long' and
`unsigned long long'. The `long long' names will be changed
shortly to make them portable to Win32.
Changed H5T_init() to H5T_native_open() and added an
H5T_native_close() to open and close the predefined native
data types.
Increased the initial size of the type conversion table from
64 to 128 entries.
Reordered the 90 new integer conversion functions so the names
that are printed favor `int' over `short' or `long' when two
of them are the same.
./test/dtypes.c
Added hardware and software integer conversion tests for the
56 functions I added recently but not the additional 36
checked in this time. That will come next.
Call H5close() after each test so type conversion statistics
are easier to follow. Try this: $ HDF5_DEBUG=t ./dtypes
Added more debugging output for when things go wrong.
./src/H5private.h
Removed trailing carriage-returns inserted by broken operating
system ;-)
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pointers to references
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