| Commit message (Collapse) | Author | Age | Files | Lines |
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from H5C to H5P
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Changed a zero to H5C_DEFAULT.
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----------------------
./configure.in
./src/H5Fprivate.h
./src/H5Fsec2.c
We now detect and use lseek64() on systems that have it (e.g.,
Irix64) and are able to generate >2GB files on Irix XFS file
systems (and anything else that supports large files). This
change also removed some warning messages from the Irix `-64'
compiler.
> $ ls -l istore.h5
> -rw-r--r-- 1 matzke meshtv 8605436856 Feb 17 14:03 istore.h5
./configure.in
./src/H5Fprivate.h
./src/H5Fstdio.h
We now detect and use fseek64() on systems that have it (e.g.,
Irix64) and are able to generate >2GB files on Irix XFS file
systems (and anything else that supports large files). This
change also removed some warning messages from the Iris `-64'
compiler.
./src/H5E.c
./src/H5Epublic.h
Added the H5E_OVERFLOW error to signal file address overflow.
./src/H5Fpublic.h
./examples/h5_chunk_read.c
./examples/h5_compound.c
./examples/h5_extend_write.c
./examples/h5_group.c
./examples/h5_read.c
./examples/h5_write.c
./html/Datasets.html
./html/Files.html
./html/H5.api.html
./html/H5.intro.html
./html/H5.sample_code.html
./html/ph5example.c
./html/review1.html
./test/cmpd_dset.c
./test/dsets.c
./test/extend.c
./test/tfile.c
./test/th5p.c
./test/theap.c
./test/tohdr.c
./test/tstab.c
./testpar/phdf5.c
Renamed file access constants to follow the naming scheme.
Also changed the base names a little to be more accurate as to
what they do. The old names H5ACC_WRITE and H5ACC_OVERWRITE
will temporarily work.
H5ACC_DEFAULT --> H5F_ACC_RDONLY for H5Fopen()
H5ACC_DEFAULT --> H5F_ACC_EXCL for H5Fcreate()
H5ACC_WRITE --> H5F_ACC_RDWR
H5ACC_OVERWRITE --> H5F_ACC_TRUNC
Albert or Kim: The H5ACC_INDEPENDENT and H5ACC_COLLECTIVE
macros in H5Fpublic.h should be an enum typedef and have names
more like H5F_MPIO_INDEPENDENT and H5F_MPIO_COLLECTIVE. Also
change the access_mode argument of H5Cset_mpio().
H5Fcreate() and H5Fopen() are more strict now about which
flags are acceptable for the operation.
./src/H5Fprivate.h
./src/H5F.c
./src/H5C.c
Changed the file access template to make it more general. A
union contains a struct for each type of low-level driver and
the default template is initialized at run-time.
./src/H5Fpublic.h
./src/H5F.c
Added H5Fget_access_template() and cleaned up
H5Fget_create_template().
./src/H5C.c
The H5Cset_mpi() no longer trashes the file access template
when an error is detected. We check for errors and *then*
update the file access template.
Added H5C_close() so Albert and Kim have a place to release
the MPI communicator and info from the file access property
list.
Kim or Albert: I notice in H5Cset_mpi() you copy the MPI
communicator. Do you need to do something similar in
H5C_copy()?
./src/H5F.c
Added more error checking for the file creation and access
property lists because it used to be possible to make the
library dump core by swapping the creation and access property
list ID numbers of H5Fcreate().
./test/istore.c
./test/tfile.c
./test/th5p.c
./test/theap.c
./test/tohdr.c
./test/tstab.c
./testpar/testphdf5.c
One must pass H5C_DEFAULT as the file creation or access
property list in order to get the default property list. It
is no longer possible to pass zero or any other arbitrary bad
object ID.
./src/H5Fcore.c
./src/H5Ffamly.c
./src/H5Flow.c
./src/H5Fmpio.c
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5MF.c
The file access property list is passed to all H5F_low_...()
functions and to the drivers.
./src/H5Fcore.c
The block size can be set at run time on a per-file basis
instead of at compile time across all files. The "5000 items in
a group test" now takes 1.6 seconds.
./src/H5private.h
Removed inclusion of mpi.h and mpio.h since they're included
from H5public.h.
./src/H5Cpublic.h
./src/H5C.c
Added H5Cset_stdio(), H5Cset_sec2(), H5Cset_core(),
H5Cset_split(), and H5Cset_family() in addition to the
H5Cset_mpio() that Kim and Albert already wrote. We still
need the H5Cget_driver() and an H5Cget...() counterpart for
each of those functions. The split and family drivers still
need a little work but I'm checking this in anyway.
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----------------------
./src/*.h
Fixed indentation where indent(1) screwed up. This isn't by
any means the final say, but it's better than it was.
./src/H5A.c
./src/H5Aprivate.h
./src/H5Apublic.h
./src/H5C.c
./src/H5D.c
./src/H5E.c
./src/H5F.c
./src/H5G.c
./src/H5M.c
./src/H5P.c
./src/H5T.c
./src/H5Tconv.c
./src/debug.c
./test/dtypes.c
./test/istore.c
./test/theap.c
./test/tohdr.c
./test/tstab.c
Removed some atom functions from the API and made them
library-scope. Also changed some names by removing the
redundant `atom' from the name and by adding a `_' after the
`H5A'.
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----------------------
./config/freebsd2.2.1
./config/linux
Added -UH5O_DEBUG to the debug flags. Turn this on to get
lots of lines on stderr to show what objects are opened and
closed.
./src/H5C.o
./src/H5Cpublic.h
./test/dsets.c
./test/tfile.c
Split H5Cget_prop() and H5Cset_prop() into functions for each
property.
./src/H5D.c
./src/H5Dpublic.h
./src/H5Gstab.c
./src/H5O.c
./src/H5Ocont.c
./src/H5Ocstore.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Oistore.c
./src/H5Oname.c
./src/H5Onull.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Ostab.c
./src/H5P.c
./src/istore.c
./test/tohdr.c
Object header functions now understand constant
vs. non-constant messages.
./src/H5F.c
./src/H5Fprivate.h
The file OID can be closed before other OID's.
./src/H5Flow.c
H5F_addr_defined() is a macro in this file.
./src/H5G.c
./src/H5Gpublic.h
./test/tstab.c
A current working group cannot be deleted.
./src/H5Gent.c
./src/H5Gpkg.h
Removed unused functionality.
./src/H5public.h
Includes <sys/types.h> for size_t.
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----------------------
./src/H5private.h
Changed HDF5_MAJOR_VERSION to 5
./src/H5Aprivate.h
./src/H5Apublic.h
Added group atoms.
./src/H5D.c
./src/H5P.c
./test/istore.c
./test/tohdr.c
./test/tstab.c
Updated for symbol table interface changes.
./src/H5F.c
./src/H5Fprivate.h
Simpler handling of special case files: empty files and files
with a single object.
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5Gpublic.h
./src/H5Gshad.c (DELETED)
./src/H5Gstab.c
./src/Makefile.in
Removed shadows, simplifying code. Symbol table entries are
allowed to cache only constant meta data. Fixed naming.
./src/H5O.c
./src/H5Oprivate.h
Access to object headers is always done through a symbol table
entry instead of a file address. Added stubs for opening and
closing object headers to be used when deletion is implemented.
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./src/Makefile.in
Added H5Ffamily.c and H5Fsplit.c
./src/H5B.c
./src/H5Bprivate.h
./src/H5Gnode.c
Added `const' to sublass arguments.
./src/H5F.c
./src/H5Flow.c
./src/H5Fsec2.c
Make sure file buffers get flushed during a call to
H5Fflush(). Check for overflow in address encoding and decoding.
./src/H5Ffam.c
./src/H5Fprivate.c
./test/istore.c
Implementation of file families so 32-bit machines can access
64-bit files.
./src/H5Oprivate.h
Removed H5O_NO_ADDR constant.
./config/freebsd2.2.1
./config/linux
Added -DH5G_DEBUG and -DH5F_DEBUG to the list of debugging flags.
./html/H5.format.html
Changed some <offset>-sized things to <length>-sized things.
./src/H5AC.c
./src/H5ACprivate.h
./src/H5B.c
./src/H5Bprivate.h
./src/H5C.c
./src/H5D.c
./src/H5F.c
./src/H5Fcore.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fsec2.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5Gshad.c
./src/H5Gstab.c
./src/H5H.c
./src/H5Hprivate.h
./src/H5MF.c
./src/H5MFprivate.h
./src/H5O.c
./src/H5Ocont.c
./src/H5Oistore.c
./src/H5Oprivate.h
./src/H5Ostab.c
./src/H5Ostdst.c
./src/H5pivate.h
./src/debug.c
./test/istore.c
./test/theap.c
./test/tohdr.c
./test/tstab.c
Lots of changes caused by generalizing addresses. The haddr_t
is now a struct, so you can no longer perform arithmetic on
it. But since it's small, simple, and often used, storage is
allocated like with an integer. But we always pass them
around by reference. That is, when using an address in
another struct, allocate space:
struct my_struct {
char *name;
haddr_t address;
} x;
But when passing it to a function, pass by reference:
H5F_addr_print (stderr, &(x.address));
Addresses should be initialized with
H5F_addr_undef (&(x.address));
Functions for operating on addresses are in H5Flow.c and begin
with H5F_addr_... Functions never return haddr_t or haddr_t*;
they always pass them through arguments instead. A function
that returns an address through an argument does so with its
last argument and it is marked with `/*out*/'. Calls to such
functions also mark output-only arguments with `/*out*/'
./src/H5Fsplit.c (new)
A two-member family where all meta data goes in the first
member and all raw data goes in the second member.
./src/H5B.c
./src/H5D.c
./src/H5F.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fsec2.c
./src/H5Fstdio.c
./src/H5Gnode.c
./src/H5H.c
./src/H5MF.c
./src/H5MFprivate.h
./src/H5O.c
Differentiate between meta data storage and raw data
storage. Provide a mechanism so that the file driver can
extend the file to allocate more memory.
./src/H5E.c
./src/H5Epublic.c
Added the error H5E_TRUNCATED to be reported when the file is
shorter than the length recorded in the boot block.
./src/H5F.c
Added H5F_locate_signature() so we only do it in one place
now.
./INSTALL
./INSTALL_MAINT
Just a couple clarifications.
./html/ExternalFiles.html
./html/storage.html
Documents how external files work.
./test/hyperslab.c
./test/istore.c
Fixed printf's on 64-bit machines.
./test/istore.c
Added ifdef's to test the split file driver.
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./config/freebsd2.2.1
Rewritten to be more flexible.
./src/H5AC.c
./src/H5ACprivate.h
./src/H5F.c
./src/H5H.c
./src/H5Gpkg.h
./src/H5Gshad.c
./src/H5O.c
./test/istore.c
./test/tstab.c
Accumulates cache statistics and displays the results on
stderr when the file is closed if it was opened with
H5F_ACC_DEBUG passed into H5F_open()
./src/H5B.c
./src/H5Bprivate.h
./src/H5Fistore.c
./src/H5Gnode.c
Added more debugging which is turned on if H5B_DEBUG is
defined on the compile command (see config/linux).
Fixed a couple of bugs with left insertions which are used by
the indexed storage stuff.
./src/H5Flow.c
Fixed a memory leak.
./src/H5Fprivate.h
Fixed warnings about shifting more than size of object.
./src/H5Fstdio.c
Fixed seek optimizations back to the way Quincey originally
had them.
./src/H5V.c
Removed unused variables.
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----------------------
./config/depend.in
Fixed backslashes in sed script because the H5Gnode.c
dependency info was disappearing. You'll have to rerun
config.status to rebuild the Makefiles unless you use gnu
make.
./config/conclude.in
Also removes emacs backup files, TAGS, and svf backup files.
./config/linux
Grouped gcc flags and added provisions for debugging vs. production.
./html/H5.format.html
Updated messages 0x0008, 0x0009, and 0x000A.
./html/storage.html
Documentation describing storage schemes.
./src/Makefile.in
./test/Makefile.in
New source files.
./src/H5A.c
./src/H5Apublic.h
./src/H5C.c
Changed VOIDP to void* in a couple places.
./src/H5AC.c
./src/H5ACprivate.h
./src/H5B.c
./src/H5Bprivate.h
./src/H5G.c
./src/H5Gnode.c
./src/H5Gprivate.h
./src/H5H.c
./src/H5O.c
Removed `const' from some variables because H5G_node_found() wanted
to modify it's udata argument. Removing const there caused it
to cascade to these other locations.
./src/H5AC.c
./src/H5ACprivate.h
./src/H5B.c
./src/H5Gnode.c
./src/H5Gstab.c
./src/H5H.c
./src/H5O.c
Added an extra argument to H5AC_find_f() and H5AC_protect(). This
arg gets passed to the load() method. Also added an extra
argument to the H5AC_find() macro.
./src/H5B.c
./src/H5Bprivate.h
./src/H5Gnode.c
Extra argument passed to the sizeof_rkey() method.
./src/H5Fprivate.c
./src/H5Fistore.c (new)
Added indexed I/O operations.
./src/H5G.c
./src/H5Gnode.c
./src/H5Gprivate.h
Beginning to add H5G_open/close and related bug fixes.
./src/H5Oprivate.h
./src/H5Oistore.c (new)
Added the H5O_ISTORE messsage (0x0008) for indexed storage of
objects.
./src/H5private.h
Added extra braces around both sides of the FUNC_ENTER() and
FUNC_LEAVE() macros so FUNC_ENTER() can appear before
declarations or after executable statements the second case is
used by H5G_namei() to initialize output arguments to sane
values before FUNC_ENTER() might return failure.
int f ()
{
int decl1;
printf ("This happens before FUNC_ENTER()\n");
FUNC_ENTER (...);
int another_declaration;
./src/H5B.c
./src/H5Bprivate.h
./src/H5Gnode.c
Extra arguments for key encoding and decoding.
./src/H5E.c
./src/H5Epublic.h
./src/H5Fistore.c
./src/H5Oistore.c
./src/H5Oprivate.h
Indexed, chunked, sparse storage (not ready for general consumption
yet).
./src/H5V.c (new)
./src/H5Vprivate.h (new)
./test/hyperslab.c (new)
Vector, array, and hyperslab functions.
./src/H5B.c
./src/H5Bprivate.h
./src/H5Fistore.c
./src/H5Gnode.c
./src/H5V.c
./src/H5Vprivate.h
./test/hyperslab.c
Added functionality for indexed storage.
./src/H5F.c
Fixed problems with seek optimizing. Recommend we disable it
until we can implement it in the file/address class since all
of HDF5 must be aware of it.
./src/H5O.c
Fixed comeent speling erorr :-)
./MANIFEST
Added new files.
./config/conclude.in
Added the word `Testing' to the test cases. So if a test
program is called hyperslab then the make output will contain
the line `Testing hyperslab'.
./config/linux
The default file I/O library is Posix section 2 on my linux
machine so I can do some I/O performance testing.
./src/H5C.c
./src/H5Cprivate.h
./src/H5Cpublic.h
Added ability to set size of indexed-storage B-tree.
./src/H5D.c
./src/H5E.c
./src/H5Epublic.h
./src/H5F.c
./src/H5Fprivate.h
./src/H5G.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5Gpublic.h
./src/H5Gshad.c
./src/H5Gstab.c
./test/stab.c
Changed `directory' to `group' in numerous places.
./src/H5private.h
The FILELIB constant can be set on the compile command-line.
./src/istore.c NEW
Tests for indexed storage.
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problems when opening the same file more than once.
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to int64 encode/decode to fix purify on 32-bit systems, changes to
H5O_modify, changes to H5D.c to use H5F_open/close(), etc.
Documentation will be mailed shortly...
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Testing H5O_remove() and H5O_load().
./test/tstab.c
Uncommented call to H5O_read() since H5O_remove() is
implemented now.
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./test/tohdr.c
./test/tmeta.c
./test/theap.c
./test/tfile.c
./test/testhdf5.h
./test/testhdf5.c
Changed the MESSAGE macro so it doesn't have a semicolon
inside the argument list and automatic indentation tools work
better.
Old call: MESSAGE (5, printfunc("foo%s %d", s, i););
New call: MESSAGE (5, ("foo%s %d", s, i));
The parentheses are required.
./test/tstab.c
Added more tests.
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No longer calls H5G_mkroot().
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./test/testhdf5.h
./test/tfile.c
./test/theap.c
./test/tmeta.c
./test/tohdr.c
./test/tstab.c
Fixed include files.
./test/Makefile.in NEW
./test/Makefile
Removed Makefile; it is now generated from Makefile.in by
configure.
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Removed tests for H5_BTREEPAGE_SIZE and added tests for
H5_SYM_LEAF_K and H5_SYM_INTERN_K.
./test/tstab.c
Removed call to H5O_link() since it's handled by H5G_insert().
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Removed unused local variables.
./test/tstab.c
Now uses directory-aware functions which in turn call the
unaware functions.
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Added defn for int64 and uint64 on irix. It seems to be
wrong, but at least things compile and run. This file will go
away with autoconf anyway.
./test/testhdf5.c
./test/Makefile
Added tstab.c
./test/testhdf5.h
Added tstab.c
Fixed bugs with CHECK_I() and CHECK_PTR().
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