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* Refactor H5S__hyper_project_intersection to operate directly on spanNeil Fortner2019-06-011-1/+719
| | | | | trees, improving performance and removing the conditionn that the extents be equal.
* Merge branch 'develop' of ↵Songyu Lu2019-04-091-18/+66
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
| * HDFFV-10365: Changes as described in the RFC: H5Sencode/H5Sdecode Format Change.Vailin Choi2019-04-061-18/+66
| | | | | | | | This also addresses HDFFV-10255: H5Sencode/decode performance issue.
* | This commit basically has the following changes:Songyu Lu2019-04-041-193/+5
|/ | | | | | 1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties. 2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables. 3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get.
* C and POSIX call cleanupDana Robinson2019-01-111-4/+4
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* fixed typo.Hyo-Kyung Lee2018-07-101-1/+1
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* Revert "Merge pull request #1116 in HDFFV/hdf5 from ↵hdftest2018-06-241-4/+1
| | | | | | | ~HDFTEST/hdf5_hft:hdf5_1_10 to develop" This reverts commit e9f476dad47ce593f13dacb77b1cc664d1f24e7b, reversing changes made to 2ff00b1b937ebe36ac6ddf590c16a4c27fc0b053.
* Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-041-1/+1
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| * Fix for HDFFV-10180 Performance issues with H5Oget_info.Vailin Choi2018-04-241-1/+1
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* | Fix for HDFFV-10469: set to latest format for virtual layout encoding.Vailin Choi2018-05-171-1/+1
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* | temporary fix for HDFFV-10469M. Scot Breitenfeld2018-05-091-1/+4
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* | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-081-9/+0
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| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-603/+926
| |\ | | | | | | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
* | \ synced with developM. Scot Breitenfeld2018-01-051-0/+452
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| * | HDFFV-9724 Corrected files and verified testsAllen Byrne2017-12-281-603/+935
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| * | Revert "Merge pull request #826 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to ↵lrknox2017-12-221-923/+570
| | | | | | | | | | | | | | | | | | | | | develop" This reverts commit b1223dd653e65e076af92b2dfe236f3704da81c8, reversing changes made to b25f123f5f5e25c1447a6a02861cb7c7265c12f2.
| * | Cleanup comments and if() in TRY blocksAllen Byrne2017-12-201-608/+497
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| * | HDFFV-9724 Add ENV VAR to vds testAllen Byrne2017-12-191-0/+190
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| * | HDFFV-9724 Initial changes and testAllen Byrne2017-12-111-0/+274
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| * Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* | Fix library interface commands, add missing JNIAllen Byrne2017-12-211-603/+483
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* | Fix for HDFFV-9947 H5SencodeVailin Choi2017-11-281-1/+1
| | | | | | | | Modifications to fix H5Sencode bug when num points selected is > 2^32.
* | Change copyright headers to replace url referring to file to be removedlrknox2017-04-141-6/+4
|/ | | | | | | | and replace it with new url for COPYING file. Fix 2 lines in java error test expected output file where messages include line numbers changed by reducing the copyright header by 2 lines.
* Fix alignmentAllen Byrne2017-03-081-9/+9
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* Fix vds testsAllen Byrne2017-03-071-9/+28
| | | | java wrong call vds test - missing checks and if content
* [svn-r30189] Description:Quincey Koziol2016-07-181-1/+0
| | | | | | | | | Clean up more warnings: drop the warning count from ~1310 down to ~940, with only 31 types of warnings in 148 files (down from 38 types in 167 files). Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29884] VDS correction for get_space_status, with test change.Allen Byrne2016-05-041-0/+13
| | | | | Add new files for repack tests. Add repack tests for VDS files.
* [svn-r29421] Fix for HDFFV-9516.Dana Robinson2016-03-151-7/+153
| | | | | | | | Corrects a problem where H5Dget_access_plist() returns a dapl that does not contain all dapl fields. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial
* [svn-r28573] Merge of r28109 from revise_chunks. Minor change to test/vds.c.Dana Robinson2015-12-111-3/+3
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r27835] Description:Quincey Koziol2015-09-211-5/+7
| | | | | | | | Sync w/trunk. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r27646] Add version number to VDS global heap object encoding.Neil Fortner2015-09-011-5/+7
| | | | | | | | | Fix handling of layout version number. Other minor fixes/cleanup. NOTE: This commit changes the file format for VDS, all files must be re-generated. Tested: ummon
* [svn-r27546] Add tests for H5O__dset_bh_info (H5Oget_info) and unlimited ↵Neil Fortner2015-08-211-8/+27
| | | | | | | | selections in a region reference. Tested: ummon
* [svn-r27543] Add tests to cover remaining code coverage assertions in ↵Neil Fortner2015-08-201-0/+457
| | | | | | | | | H5Shyper.c. Add more tests for unlimited selections. Fix bug related to empty unlimited source dataset. Tested: ummon
* [svn-r27538] Add tests to cover remaining code coverage assertions in src ↵Neil Fortner2015-08-201-17/+414
| | | | | | | | directory except for those in H5Doh.c and H5Shyper.c. Tested: ummon
* [svn-r27527] Add tests to hit code coverage assertions in H5Olayout.c.Neil Fortner2015-08-191-2/+44
| | | | | | Fix issue in VDS delete routine. Tested: ummon
* [svn-r27520] Add new test for all 3 selection types in the same VDS.Neil Fortner2015-08-181-35/+1095
| | | | | | Minor cleanup in the tests. Tested: ummon
* [svn-r27505] Add support for H5Dset_extent for VDS.Neil Fortner2015-08-141-6/+238
| | | | | | | Add tests for this. Other bug fixes/cleanup Tested: Kubuntu 64 (home computer)
* [svn-r27498] Add support for I/O after reopening a VDS with unlimited and/or ↵Neil Fortner2015-08-121-0/+153
| | | | | | | | | | printf mappings without calling H5Dget_space first. Add tests for this. Other minor fixes/cleanup. Tested: ummon
* [svn-r27481] Add support for offset selections passed to H5Pset_virtual.Neil Fortner2015-08-071-4/+193
| | | | | | Add test for this. Tested: ummon
* [svn-r27479] Add checking for invalid inputs to H5Dset_virtual: point ↵Neil Fortner2015-08-071-0/+53
| | | | | | | | | | | | | selections, incorrect numbers of elements selected, incorrect "slice" through limited dimensions, incorrect number of printf substitutions. Patch source selection space extent with bounds of selection if extent is unknown before returning via H5Pget_virtual_srcspace. Write updated VDS dataspace to file when it changes due to unlimited selections. Other minor fixes/cleanup. Tested: ummon
* [svn-r27425] Implement support for H5Pequal with VDS properties.Neil Fortner2015-07-221-0/+12
| | | | | | Testing for H5Pequal with VDS. Tested: ummon
* [svn-r27424] Implement support for h5debug for VDS.Neil Fortner2015-07-221-1/+26
| | | | | | | | | | Implement support for H5Pencode/decode with VDS properties. Testing for H5Pencode/decode with VDS. Relax assertion check for number of elements written to buffer as we do not check for overlaps in mappings. Other minor fixes/cleanup. Tested: ummon
* [svn-r27420] Fixed VDS test to handle the family driver correctly.Neil Fortner2015-07-211-39/+47
| | | | Tested: ummon
* [svn-r27323] Implement support for H5Dflush for VDS.Neil Fortner2015-07-021-88/+250
| | | | | | | | | | Implement support for H5Ocopy on VDS. Testing for H5Ocopy on VDS. Fix check-vfd failure. Other minor fixes/cleanup. Note there is a preexisting failure in h5repack testing. Tested: ummon
* [svn-r27215] Fix issue where % characters could not be used in non-printf ↵Neil Fortner2015-06-161-17/+30
| | | | | | | | mappings. Other minor fixes/cleanup. Tested: ummon
* [svn-r27214] Fixed a bug on Windows where dcpls were set to be chunked and ↵Dana Robinson2015-06-161-2/+1
| | | | | | | | not virtual. This was due to a simple copy-paste issue in the initializer that is used when C99 initializers are not available. Also fixed a dims array size error in the vds test. Tested on: 64-bit Win7 with VS2013
* [svn-r27197] Improve performance of "printf" VDS with selections in the file ↵Neil Fortner2015-06-121-4/+37
| | | | | | | | | | space - the library no longer iterates over all source datasets in the printf mapping, it now only looks at the ones that could be involved in I/O (the ones whose bounds overlap with the selection in the unlimited dimension). Tested: ummon
* [svn-r27195] Add h5dump cmake tests and files.Allen Byrne2015-06-121-1/+1
| | | | | | | Add tools gen cmake files move testfiles for pbits to subdir as well as vds Tested: local linux
* [svn-r27192] Improve support for printf selections (support partial blocks withNeil Fortner2015-06-121-8/+691
| | | | | | | | | | H5_VDS_FIRST_MISSING) Add test for this Rework VDS code to not depend on unlimited selections having a "clipped" state in preparation for removing the clipped state from unlimited selections. Other bug fixes/cleanup Tested: Kubuntu 64 (home computer)
* [svn-r27153] Implement fill value support for VDS.Neil Fortner2015-06-051-885/+993
| | | | | | | | | Add testing for this. Fix bug in printf string parsing. Add test for this. Other minor fixes/cleanup. Tested: ummon
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