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* Committing clang-format changesgithub-actions2022-04-211-2/+2
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* Modifications to:vchoi2022-04-211-4/+5
| | | | | | | | | | | | A) Allow automatic generation of metadata file names for VDS support B) Allow VFD SWMR reader to open an existing HDF5 file either before the VFD SWMR writer has opened it or after it has closed. C) Remove the usage of H5P_FILE_ACCESS_ANY_VFD. D) Add H5FD_FEAT_SUPPORTS_VFD_SWMR feature flag. E) Do not map H5FD_MEM_GHEAP to H5FD_MEM_DRAW when vfd swmr IS enabled; map H5FD_MEM_GHEAP to H5FD_MEM_DRAW when vfd swmr is NOT enabled. For details regarding #A and #B above, see version 9 of the RFC.
* VFD SWMR: Normalization with develop and cleanup (#1559)Dana Robinson2022-03-311-43/+49
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Brought over plugin and test script changes * Removes remaining register keywords (#1481) * Fixed warnings in the aux process code * Minor fixes from develop * Minor changes from develop, fixed format warnings * Formatted source * Added HD prefix to timespec_get * Cleanup in new files * Removes the MANIFEST file and unused release files (#1497) * Removes the MANIFEST file and unused release files * Updated tar command * checkposix corrections * More checkposix fixes * Ripped out unused instrumentation functionality * Brought over cache tagging changes from develop * Changes to tagged metadata expulsion iteration * Fixed typo * Brought over H5O__free() changes from develop * Brings (unused) parallel page buffer test in line with develop * Moved the functionality in supervise.subr to test_vfd_swmr.sh * Tools VFD parameter updates * Committing clang-format changes * H5F VFD SWMR refactoring * Committing clang-format changes * Misc changes * Acceptance test cleanup * HD prefix * H5_get_option instead of getopt * Some bool fixes * Changes to VFD SWMR acceptance tests * Minor cleanup * Use AC_MSG_RESULT/AC_MSG_ERROR/AC_MSG_WARN instead of echo (#1532) * Merges from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* VFD SWMR: Normalization with develop (#1506)Dana Robinson2022-03-231-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Brought over plugin and test script changes * Removes remaining register keywords (#1481) * Fixed warnings in the aux process code * Minor fixes from develop * Minor changes from develop, fixed format warnings * Formatted source * Added HD prefix to timespec_get * Cleanup in new files * Removes the MANIFEST file and unused release files (#1497) * Removes the MANIFEST file and unused release files * Updated tar command * checkposix corrections * More checkposix fixes * Ripped out unused instrumentation functionality * Brought over cache tagging changes from develop * Changes to tagged metadata expulsion iteration * Fixed typo * Brought over H5O__free() changes from develop * Brings (unused) parallel page buffer test in line with develop * Moved the functionality in supervise.subr to test_vfd_swmr.sh * Tools VFD parameter updates * Committing clang-format changes * H5F VFD SWMR refactoring * Committing clang-format changes * Misc changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* VFD SWMR: normalization with develop (#1472)Dana Robinson2022-03-061-6/+7
| | | Much normalization with develop. Still needs tools changes wrt VFD plugins.
* VFD SWMR: Aux process changes (#1451)Dana Robinson2022-02-181-1/+0
| | | | | | | | | | | * Removed the aux process submodule * Directly added aux process files after submodule delete * Updated Akadio copyright on appropriate files * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Updated VFD SWMR's Akadio licenseDana Robinson2022-02-171-12/+12
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* Committing clang-format changesgithub-actions2021-11-171-1/+2
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* 1) Core changes for adding NFS/updater support as described in the RFC.vchoi2021-11-171-2/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | src/H5Pfapl.c src/H5Fvfd_swmr.c src/H5Fpublic.h src/H5Fpkg.h src/H5Fprivate.h 2) For VFD SWMR testing, add private property for checksum generation of metadata files: src/H5Fint.c src/H5Fvfd_swmr.c src/H5Pfapl.c src/H5Fpkg.h src/H5Fprivate.h 3) Fix the following in H5F_vfd_swmr_init() and H5F_vfd_swmr_close_or_flush(): (a) Allocate metadata file index right after metadata file header. (b) Set tick number to 0 when creating header and index for file open case. (c) Remove tick number increment at file close. src/H5Fvfd_swmr.c src/H5Ftest.c 4) To be consistent with the RFC, change the name for field "chksum" to "checksum" in struct H5FD_vfd_swmr_idx_entry_t: src/H5FDprivate.h src/H5FDtest.c src/H5FDvfd_swmr.c src/H5Ftest.c src/H5PB.c 4) Add tests for NFS/updater test/vfd_swmr.c 5) Modify common routine init_vfd_swmr_config() to accept updater_file_path test/vfd_swmr_common.c test/vfd_swmr_common.h 6) Changes to the tests due to the common routine init_vfd_swmr_config(): test/vfd_swmr_addrem_writer.c test/vfd_swmr_attrdset_writer.c test/vfd_swmr_bigset_writer.c test/vfd_swmr_dsetchks_writer.c test/vfd_swmr_dsetops_writer.c test/vfd_swmr_generator.c test/vfd_swmr_gfail_writer.c test/vfd_swmr_gperf_writer.c test/vfd_swmr_group_writer.c test/vfd_swmr_reader.c test/vfd_swmr_remove_reader.c test/vfd_swmr_remove_writer.c test/vfd_swmr_sparse_reader.c test/vfd_swmr_sparse_writer.c test/vfd_swmr_vlstr_reader.c test/vfd_swmr_vlstr_writer.c test/vfd_swmr_writer.c test/page_buffer.c
* Committing clang-format changesgithub-actions2021-08-121-52/+69
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* Modifications based on PR feedback.vchoi2021-08-121-161/+163
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* (1)vchoi2021-08-101-88/+229
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | src/H5Fvfd_swmr.c --enable or disable raw data flush depending on configuration (2) vfd_swmr_dsetchks_writer.c vfd_swmr_dsetops_writer.c --modifications to test/verify when flushing of raw data is enabled/disabled --refactor coding (3) testvfdswmr.sh.in --add testing with/without flush of raw data to tests: dsetchks and dsetops (4) vfd_swmr_attrdset_writer.c --pass true for flushing raw data to the common routine init_vfd_swmr_config() --refactor coding so that it has similar format as the other two tests: dsetops and dsetchks (5) vfd_swmr_addrem_writer.c vfd_swmr_bigset_writer.c vfd_swmr_generator.c vfd_swmr_group_writer.c vfd_swmr_reader.c vfd_swmr_remove_reader.c vfd_swmr_remove_writer.c vfd_swmr_sparse_reader.c vfd_swmr_sparse_writer.c vfd_swmr_vlstr_reader.c vfd_swmr_vlstr_writer.c vfd_swmr_writer.c vfd_swmr_zoo_writer.c --pass true for flushing raw data to the common routine init_vfd_swmr_config()
* VFD SWMR: Fixes naked basename() call on MacOS (#874)Dana Robinson2021-08-041-1/+7
| | | | | | | * Fixes naked basename() call on MacOS * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Committing clang-format changesgithub-actions2021-07-131-4/+4
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* Modifications to common routines used by VFD SWMR tests:vchoi2021-07-131-10/+5
| | | | | | (1) Add a parameter page_buf_size to the common routine vfd_swmr_create_fapl(). (2) Add a new common routine vfd_swmr_create_fcpl() to set the file space strategy and file space page size. VFD SWMR tests are modified accordingly to call the above routines.
* Modifications based on PR feedback.vchoi2021-06-291-13/+18
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* Committing clang-format changesgithub-actions2021-06-161-584/+607
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* Add new test that handles chunk operations for chunked datasets.vchoi2021-06-161-0/+2246
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