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* Skip test in test/fheap.c when:Vailin Choi2017-08-021-0/+16
| | | | | | a) multi/split drivers and b) persisting free-space or using paged aggregation strategy because the library will fail file creation (temporary) for the above conditions.
* Changes made based on RFC review commentsVailin Choi2017-08-021-0/+17
| | | | Test the changes in a branch via daily testing.
* Merge pull request #608 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to ↵Vailin Choi2017-07-271-2/+95
|\ | | | | | | | | | | | | hdf5_1_10 * commit 'fc76c7785251482a26f31efabb10d38725facb6a': Fix for HDFFV-10217 infinite loop in H5VM_power2up(). The function H5VM_power2up() returns the next power of 2 for n. When n exceeds 2^63, it overflows and becomes 0 causing the infinite looping. The fix ensures that the function checks for n >= 2^63 and returns 0.
| * Fix for HDFFV-10217 infinite loop in H5VM_power2up().Vailin Choi2017-07-191-2/+95
| | | | | | | | | | | | The function H5VM_power2up() returns the next power of 2 for n. When n exceeds 2^63, it overflows and becomes 0 causing the infinite looping. The fix ensures that the function checks for n >= 2^63 and returns 0.
* | Add check for plugin initializeAllen Byrne2017-07-261-0/+3
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* Fix for HDFFV-7853 H5Ocopy doesn't work with open identifiersVailin Choi2017-07-181-117/+475
| | | | Changes made so that raw data for dataset objects are copied from cached info when possible instead of flushing objects to file and read them back in again.
* Merge of recent develop work to 1.10 branch.Dana Robinson2017-07-053-14/+156
| | | | | | | | | | Fixes for: * HDFFV-10247 (autotools Fortran long double bug) * HDFFV-10248 (autotools deprecated debug/production tweak) * HDFFV-10250 (-fno-omit-frame-pointer w/ symbols) * Disabled missing parameter warnings in Java constant code * Added H5I_VFL ID checks to tmisc.c * Added 'get a dummy VFD' call to h5test library
* Merge of recent develop work to 1.10 branch:Dana Robinson2017-05-3110-20/+211
| | | | | | | | | * H5FD_FEAT_DEFAULT_VFD_COMPATIBLE VFD feature flag (HDFFV-10214) * H5FDdriver_query() API call (HDFFV-10215) * Fix to skip SWMR tests that when the current VFD is not compatible with the default VFD (HDFFV-10197) * Removed obsolete compiler versions from config/gnu-flags (HDFFV-9937) * Many warning fixes
* Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c -lrknox2017-05-111-1/+1
| | | | | changed to H5Dopen2 to fix failure with --with-default-api-version=v16 configure option.
* Fix for the two issues reported in HDFFV-10051Vailin Choi2017-05-101-13/+6
| | | | | Modifications made based on the review comments from pull request #494 Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu.
* Fix for the two issues reported in HDFFV-10051:Vailin Choi2017-05-101-0/+119
| | | | | | | | | | | (1) Repeated open/close of a compact dataset fails due to the increment of ndims in the dataset structure for every open. --This is done only for chunked dataset via H5D__chunk_set_sizes(). (2) layout "dirty" flag for a compact dataset is not reset properly after flushing the data at dataset close. --Reset the "dirty" flag before flushing the message to the object header via H5O_msg_write(). Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
* HDFFV-10173 revert and add dynlib flagsAllen Byrne2017-04-251-3/+15
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* Change signature of H5PLget_sizeAllen Byrne2017-04-251-8/+15
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* The cache_image test shows a skipped message about EoC in parallel.Dana Robinson2017-04-202-10/+9
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* Added code to disable the evict-on-close feature inDana Robinson2017-04-202-0/+108
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* HDFFV-10170 undo patchAllen Byrne2017-04-181-7/+6
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* Add plugin options for libsAllen Byrne2017-04-181-0/+4
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* Merge pull request #431 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10Larry Knox2017-04-171-4/+1
|\ | | | | | | | | | | | | | | * commit 'b67e626ba9095f35dd9a8f9e8ca906320f85914c': HDFFV-10173 remove hook for noinst libs HDFFV-10170 fix noinst for test libs HDFFV-10173 fix compile on VS2008 Due to HDFVIEW-19 add read VL as string function
| * HDFFV-10173 remove hook for noinst libsAllen Byrne2017-04-171-3/+0
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| * HDFFV-10170 fix noinst for test libsAllen Byrne2017-04-171-1/+1
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* | Add new files in release_docs to MANIFEST.lrknox2017-04-151-7/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Conflicts: README.txt c++/src/Makefile.in fortran/src/Makefile.in hl/c++/src/Makefile.in hl/fortran/src/Makefile.in hl/src/Makefile.in java/src/jni/Makefile.in release_docs/RELEASE.txt src/Makefile.in
* | Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to ↵lrknox2017-04-143-0/+13
| | | | | | | | | | | | | | | | | | hdf5_1_10_1 * commit '0d05cb607e5951f3a28a101be56ca194022a7fa1': Reverted addition of The HDF Group copyright headers to 3rd party CMake files for Java. Add Copyright headers to 90 files (mostly .cmake files) without Copyright headers. Add "Copyright by The HDF Group."" to copyright header.
* | Change copyright headers to replace url referring to file to be removedlrknox2017-04-14169-1014/+676
|/ | | | | | | | and replace it with new url for COPYING file. Fix 2 lines in java error test expected output file where messages include line numbers changed by reducing the copyright header by 2 lines.
* Skip tests for page buffering in test/fheap.c for parallel buildVailin Choi2017-04-131-2/+11
| | | | | Skip the two tests for page buffering in test/fheap.c because this feature is disabled in parallel. Activate full testing when this feature is re-enabled in the future for parallel build.
* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2017-04-111-2/+2
|\ | | | | | | | | | | * commit '2821b8bd768138db6b5f917a5b7325f878f8f7d0': Fix URL name DAILYTEST-250 change test props to reduce timeout
| * DAILYTEST-250 change test props to reduce timeoutAllen Byrne2017-04-111-2/+2
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* | Fix for H5Dset_extent test failure with extensive array indexing (HDFFV-9771)Vailin Choi2017-04-112-49/+31
|/ | | | | 1) Calculate chunk index for extensive array index based on swizzled max chunks when unlim_dim > 0 2) Minor fixes to test/fheap.c that somehow were missed from last check in. See pull request #396 review comments.
* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2017-04-071-0/+1
|\ | | | | | | | | | | | | * commit '4a05d27c6fcef81612e005b6f6429ab362247492': HDFFV-10143 add missing javadoc param Add missing test status Fix CMake regex commands
| * Add missing test statusAllen Byrne2017-04-061-0/+1
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* | Modify test/fheap.c to run with various file space strategies and/or page ↵Vailin Choi2017-04-051-301/+368
|/ | | | | | | | buffering Modify test/fheap.c to run with different combinations of file space strategies and page buffering only when ExpressMode is 0 (HDF5TestExpress is 0). Tested on ostrich, platypus, mayll, emu, osx1010test, quail, kite, kituo.
* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2017-04-051-8/+13
|\ | | | | | | | | * commit '60bb3fd1108e2006a79b008d031a0f68a1e6b393': Re-enabled fixed array index testing in the test_random_rank4_vl() test in test/set_extent. This was fixed some time ago, but the test was never re-enabled for that index type.
| * Re-enabled fixed array index testing in the test_random_rank4_vl() testDana Robinson2017-04-051-8/+13
| | | | | | | | | | in test/set_extent. This was fixed some time ago, but the test was never re-enabled for that index type.
* | Fix typo deletionAllen Byrne2017-04-041-2/+2
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* | HDFFV-10143 clean up format and function returnAllen Byrne2017-04-041-348/+306
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* | Update with checks for index boundsAllen Byrne2017-04-031-11/+14
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* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2017-04-032-14/+588
|\ \ | |/ | | | | | | | | | | | | | | | | * commit '2412158ed8326a3f3d62fbd947e470667d0b5951': Add new file COPYING_LBNL_HDF5. Revert "Clear hdf5 1.10 entries from RELEASE.txt in the develop branch. Entries" Add LBNL license file and modify COPYING file accordingly. Omnibus checkin for several relatively minor modifications: Clear hdf5 1.10 entries from RELEASE.txt in the develop branch. Entries in this branch version of RELEASE.txt should be intended for the future 1.12.0 release. Fix HDFFV-8089 Description: Some code within an "ifdef H5D_CHUNK_DEBUG" block was using outdated data structure but not caught because the case of H5D_CHUNK_DEBUG being defined was never tested. It was commented out. I defined H5D_CHUNK_DEBUG, tested, and commented out again. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
| * Omnibus checkin for several relatively minor modifications:mainzer2017-03-282-14/+588
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 1) Added code test/page_buffer.c to verify that page buffering is disabled in parallel builds. 2) Added code to test/cache_image.c to verify correct interaction between evict on close and cache image -- in particular management of a file containing a cache image containing dirty metadata that has been opened R/O. Also fix for the bug exposed. 3) Added code to testpar/t_cache_image.c to verify expected procedure for reading cache images, and also supporting stats collection code needed for the test. 4) Repair of an overactive sanity check in H5C__reconstruct_cache_contents(). 5) Other minor tidies in passing. Tested serial and parallel, debug and production on Jelly.
* | HDFFV-10143 surround will fail with try blockAllen Byrne2017-03-301-1/+4
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* | HDFFV-10143 typo cleanupAllen Byrne2017-03-301-4/+4
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* | HDFFV-10143 typo removedAllen Byrne2017-03-301-1/+1
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* | Fix code error and use H5PL_MAX_PATH_NUM in testAllen Byrne2017-03-301-13/+17
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* | HDFFV-10143 Cleanup due to commentsAllen Byrne2017-03-301-7/+7
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* | HDFFV-10143 remove debugging outputAllen Byrne2017-03-301-6/+0
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* | HDFFV-10143 change h5PLget to use buffer like H5Iget_nameAllen Byrne2017-03-301-12/+41
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* | HDFFV-10143 change put to replace and add constAllen Byrne2017-03-301-1/+1
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* | HDFFV-10143 Fix initial issues from reviewAllen Byrne2017-03-301-60/+92
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* | HDFFV-10143 add APIs to manipulate plugin path tableAllen Byrne2017-03-281-215/+407
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* Run all scripts using signal files between processes in their own ↵lrknox2017-03-224-6/+83
| | | | directories to avoid accidental deletion of the signal files.
* Run swmr tests in their own subdirectory of test to avoid signallrknox2017-03-171-0/+23
| | | | file deletion by other tests.
* output_filter.sh:lrknox2017-03-151-5/+22
| | | | | | | | | | | | | | | | | | | | Comment added to address HDFFV-8270. The sample ontput in the file's comments are not up-to-date with the scripts in the file that remove output unique to certain systems when running test scripts. This output doesn't match expected output files for the tests, causing them to fail. Ther output_filter.sh file removes such output. Currently we don't have access to these systems to update the comments. testflushrefresh.sh.in: flushrefresh and other SWMR tests have been failing occasionally but regularly since bringing them to the develop branch. The logs and debugging point to unexpected deletion of signal files as the point of failure, and John Mainzer suggests that two such tests running simultaneously in the same directory may lead to the operating system deleting the other test's signal file. Running the flushrefresh test in its own directory seems to solve the problem.
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