| Commit message (Collapse) | Author | Age | Files | Lines |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description: Quincey added the condition branch (else if (*((ST*)S) != (ST)((DT)(*((ST*)S)))))
in the definition of the macro H5T_CONV_Fx_CORE. It handles a special situation
when the source is "float" and assigned the value of "INT_MAX". Compilers do roundup
making this value "INT_MAX+1". This branch is to check that situation and return
exception for some compilers, mainly GCC.
The branch if (*((ST*)S) > (DT)(D_MAX) || (S_PREC < D_PREC && *((ST*)S) ==
(DT)(D_MAX))) is for some compilers like Sun, HP, IBM, and SGI where under
the same situation the "int" doesn't overflow.
A test was added to dt_arith.c to check 2 conversions, from float to int where the
float is INT_MAX, and from double to signed char where the double is SCHAR_MAX.
Platforms tested: h5committest and fuss.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup/reorganization
Description:
Merge back some more changes extracted from the "compact group" set.
This bunch cleans up and prepares the H5G_* routines for eventual import of
new features.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4
Mac OS X.4
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Merge back changes from "compact group" work that improve the
infrastructure of the library and may impact others. In this round of
merging, that includes:
- Move datatype allocation into single internal routine, instead of
duplicated code that was spread out in a dozen or so places.
- Clean up guts of object header routines (H5O_*) to allow for some of
the fancieroperations that need to be performed on groups, along with
some general improvements.
- Added a new error code
- Some minor cleanups in other code....
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4
Mac OS X
|
|
|
|
|
|
|
|
|
|
|
| |
Add more assertion error check
Description:
Solution:
Platforms tested:
heping
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Incorrectly terminated the received string in getenv_all
Solution:
Tasks would incorrectly terminat the environment string they received from the
root task in getenv_all.
They did the equivalent of:
env[strlen(str) + 1] = '\0'.
This resulted in a single "garbage" character inserted
at the end of the string. This wasn't noticed until now because it seems that on most
platforms this garbage character was a 0 anyway.
This has been corrected to;
env[strlen(str)] = '\0'.
Platforms tested:
Red Storm (where the bug was discovered)
heping (pp)
Misc. update:
|
|
|
|
|
|
|
|
|
| |
Description: Put in a new API funciton, H5Tis_hard. It checks whether
the conversion function from a native type to another native type is a
compiler (hard) conversion. Also checked a test in test/dt_arith.c.
Platforms tested: h5committest and fuss.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix & code cleanup
Description:
Address most of datatype conversion exception handling bug that Ed
Hartnett reported. (He's reported a different problem now, but we're closer
at least).
Also, condense exception handling #ifdef's into one location instead of
spread out in so many places.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Changed some scale+offset filter symbols from H5_SO_... -> H5Z_SO_...
to indicate that they are in the H5Z package.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
update dsets.c for scale-offset filter.
Description:
H5Psetscaleoffset has changed parameters.
Solution:
Platforms tested:
sol 2.7, Linux 2.4, AIX 6.4(32-bit and 64-bit)
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
tidy up.
Description:
MPE option created *.clog file whenever it is executed in MPI.
The cleanup of *.clog files were done in individual Makefile.in.
Often, it is forgotten.
Solution:
Moved the cleaning of *.clog files to CHECK_CLEANFILES in commence.am
so that it is applied whenever check-clean is called.
Platforms tested:
heping pp using MPE.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fixes
Description:
This checkin fixes an occasional error on kelgia on sol during distclean.
It also causes test scripts to depend properly on the programs they're
supposed to be testing.
Solution:
The kelgia bug was due to some files being cleaned by automake and manually.
Removed the manual cleaning in src/Makefile.am.
Test script dependencies now need to be specified manually, since the
makefile can't guess what they test from their name. Currently all test
scripts in a given directory have a single list of dependencies--this was
easy and seems to be sufficient.
These dependencies are listed in the SCRIPT_DEPEND variable in the Makefile.am.
Platforms tested:
heping, mir, modi4, sol
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description: Added 2 new configure options, --enable-exception and --enable-accuracy.
--enable-exception lets the library check whether user's exception handling
functions are present during compiler data conversions and use them if they are.
When it's disabled, this step is skipped to improve conversion speed. This
step isn't implemented yet for soft conversions because there would be little
gain in speed.
--enable-accuracy guarantees data accuracy during data conversions. It means
the library will choose compiler conversions only if the accurate data is
secured. Otherwise, the library will go for the library's own conversions. If
this option is disabled, the library uses compiler conversions in favor of
their speed as long as they work even if data can be incorrect.
Platforms tested: h5committest and fuss. Some systems may fail after this
checkin.
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Clean up internals of group creation & iteration code.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Mac OS X (nile)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup (sorta)
Description:
Adjust H5G_stat_t to prepare for eventual "external link" information.
This also puts the information for regular objects and soft links into more
obviously separate places.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4
|
|
|
|
|
|
|
|
|
|
|
|
| |
minor tidy up.
Description:
Changed both test programs and test scripts to use the same suffixes
(.chkexe and .chklog). Changed from .log to .chklog to avoid running
into potential conflicts by other "things" (e.g., config.log).
Tested:
Heping.
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Prevent memory leak when too many links are traversed. Also add test to
traverse too many links.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4
|
|
|
|
|
|
|
|
|
|
|
|
| |
Improvement for Windows
Description:
thread number can not be printed out on windows. Add a special
macro for WIN32 to print out some helpful messages
Solution:
Platforms tested:
Heping and MSVS 6.0 on Windows XP
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Fix "strong" file closing to handle a dangling dataset which uses a
dangling named datatype.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor too require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Clean up code somewhat:
- Move from HDmemset() -> H5G_ent_reset() to clear out group entry info
- Simplify H5G_unlink() call
- Use portability macros instead of direct system calls in more places
- Improve readbility by neatening whitespace, etc.
- Move some macros into source code module instead of header files
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
New debugging feature
Description:
Add some code to track where memory from the internal free list allocator
is allocated within the library. It's not quite ready for "prime time" yet,
but it's close enough to be useful.
This is disabled by default and requires the H5FL_TRACK macro in
src/H5FLprivate.h to be uncommented to activate during debugging.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4
Too minor to require full h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Fix core dump when checking whether to invalidate the name of an object
when unlinking an object in a group opened through an object reference.
Solution:
Check if names of various objects are valid before comparing them, etc.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup/bug fix
Description:
Add missing files to manifest
Remove C++ style single-line comment from recent checkin and also re-indent
in a few places.
Platforms tested:
FreeBSD 4.11 (sleipnir) w/thread-safe
Not configured w/h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Improvement
Description:
ttsafe cancel failed on Windows because pthread mutex and cond are not initialized
Add some assertion statements to locate the errors when they happen
Solution:
Initialize pthread mutex and cond to the default attributes.
Platforms tested:
MSVS 6.0 on windows XP and heping(with pthread)
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
| |
Improvement
Description:
Add some assertion statements to locate the errors when they happen
Solution:
Platforms tested:
MSVS 6.0 on windows and heping(with pthread)
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
| |
Improvement
Description:
Add some assertion statements to locate the error when errors happen
Solution:
Platforms tested:
MSVS 6.0 on windows XP and heping(enable threadsafe with pthread)
Misc. update:
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Fix minor difference in datatype conversion exception callback routine.
Platforms tested:
FreeBSD 4.11 (sleipnir) w/C++
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.
Solution:
Ran this script in each directory:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Collapse the various tests on groups opened by dereferencing into one test.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Big fix
Description:
A group opened by dereferencing a object reference would not work for
H5Giterate(), due to the local heap & B-tree information not being cached.
Solution:
Get the local heap & B-tree info & point to that structure instead of
the group entry for the group.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix & code cleanup
Description:
Fix another bug in the file mounting code and refactor the unmount
code that it is simpler.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix and improvement.
Description:
The test output were not displayed for parallel tests.
The serial tests output were always displayed whether the test was
actually ran this time or not.
Solution:
Moved the display of test output inside the target where the actual
tests are run.
Platforms tested:
Tested in heping using pp and fortran.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix and code minor cleanup.
Description:
The attempt to redirect stderr together to the log files were
done in the wrong order such that stderr output goes to where
stdout WAS. Fixed that.
Code minor cleanup--use shell variables to hold the name of the
log file and the test instead of generating them repeatedly. This
makes easier code reading, less crowded and avoid typos.
Only conclude.in is changed. The Makefile.in changes are all
derived from automake.
Platforms tested:
h5committested.
|
|
|
|
|
|
| |
fixed typo for uint_fast16_t verification.
Tested in Red storm.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Makefile feature
Description:
'make check-clean' now cleans *.h5 files created by tests as well as
.log and .chkexe files.
Solution:
check-clean is now a separate target in its own right, which cleans less
than mostlyclean (check-clean < mostlyclean < clean < distclean).
Platforms tested:
mir, heping, modi4 (serial and parallel)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Feature: check-clean target
Description:
'make check-clean' cleans up output files from tests.
Solution:
Tests create foo.chkexe and foo.log files. Scripts create foo.chksh and
foo.logsh files. 'make check-clean' will clean these files up so that
the tests can be re-run.
Also suppressed some not-very-useful output of Makefiles when it would
echo commands.
Platforms tested:
mir, sleipnir, modi4
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Correct problems when querying information about a group that was opened
by dereferencing an object reference.
Solution:
Read in symbol table information instead of rely on it being cached.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
If a named datatype is copied and the copy is used to create a dataset,
the dataset would inadvertantly refer to the original named datatype instead
of a local (possibly modified) copy of the named datatype.
Solution:
Fixed datatype copying routine.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
| |
New port
Description:
Elena asked me to check in her NEC SX-6 work, so here it is! :-)
Platforms tested:
FreeBSD 4.11 (sleipnir)
NEC SX-6 (by Elena)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Configuration feature
Description:
Serial test output is now stored in log files and printed when all tests
in a directory complete, or when a test fails. This should make test output
more readable and useful.
Also made changes to clean up ii_files directories that are created by some
C++ compilers/linkers.
Also fixed a few minor Makefile bugs.
Solution:
When serial tests run, their output is saved in *.log or *.logsh. While
running, tests only print when they begin and when they complete; their
more specific output (from the log file) is printed if the test fails or
when all tests have completed.
Comments welcome.
Platforms tested:
mir, modi4 (parallel and serial), copper, shanti
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Rewrite code for mounting files to clean up layers of kludges and implement
a much cleaner and more maintainable design.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description: When converting floating-point numbers to integers and the values of
floating-point number are greater than the maximal value of integer, Cray X1 generates
floating exception.
Solution: Added a test in configure to detect Cray X1's exception. Set a flag to
indicate the machine that can handle overflow converting all floating-point to all
integer types. This flag should be set for all machines, except for Cray X1 where
floating exception is generated when the floating-point value is greater than the
maximal integer value.
Platforms tested: Cray X1 and h5committest.
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Further progress on fixing file mounting to work properly.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Add dependency of flush2 test on flush1 test
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
The ".chksh" file for a test script was being created in the "source"
location rather than the build location. This can cause problems when
multiple builds are running because "slower" machines will see the ".cshsh"
file from faster machines and will not run the test script as they should.
Solution:
Use 'basename' command to strip off the path of the script and create
the ".chksh" file in the build location.
Platforms tested:
FreeBSD 4.11 (sleipnir)
h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
bug fix.
Description:
-nt is not a universal option for the test command in all platforms.
The use of it in conclude.am cause some platforms to bark at the
Makefile generated.
Solution:
Created a command script bin/newer which tests if file1 is newer
than file2. Replace the "test file1 -nt file2" by
"newer file1 file2".
Platforms tested:
Tested in sol.
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
New feature
Description:
Initial checkin of B+ Tree code.
Platforms tested:
FreeBSD 4.11 (sleipnir)
h5committest
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix & code cleanup
Description:
Don't unmount child files from a parent file if the parent file is
being held open by an object.
Also, moved the mounting routines into their own source file and the
superblock routines into their own file also.
Solution:
Moved the code for unmounting child files down in the H5F_close routine
and also add checks to the file and group mounting code to unmount child
files when the last object holding open a file closes.
Platforms tested:
FreeBSD 4.11 (sleipnir)
h5committest
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Refactor metadata cache to merge "dirtied" flag in with other flags for
H5AC_unprotect and H5C_unprotect.
Platforms tested:
FreeBSD 4.11 (sleipnir)
h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Fixed bugs that caused tests to be unable to find testhdf5.sh during
daily tests, and another that broke sol and shanti.
Solution:
When tests are run, their path is ./$testname .
When scripts are run, their path has no leading "./". Fixed.
Sol and shanti don't recognize the -e option for test, but they do know
-f. Fixed.
Also modified release notes.
Platforms tested:
mir, shanti, heping
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
When a series of files is mounted on one another and one of those files
is not unmounted, the library gets confused at shutdown and goes into an
infinite loop in the file interface.
Solution:
If there are still files left in the "closing" state when shutting down
the file API, iterate over those file IDs and unmount any child files that we
find mounted on those files.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|