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https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into dset_ohdr_minimize_110
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~BMRIBLER/hdf5_1_10_bmr:hdf5_1_10 to hdf5_1_10
This is merged now so it can be tested.
* commit '74a3710a996fca5ed7fcb4dd8919a7a8521de1de':
Revised per review. Description: Changed H5EA_iterate and H5FA_iterate as suggested. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
Addressed HDFFV-10661 Description: - Fixed a bug triggered by tests in chunk_info.c. The returned value from a callback function was not checked in H5EA_iterate(), H5FA_iterate(), and H5D__none_idx_iterate(). This oversight caused a callback function to continue iterating even though it's supposed to stop. Vailin confirmed. - Addressed review comments and made various improvements on the tests. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
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Description:
- Fixed a bug triggered by tests in chunk_info.c. The returned value
from a callback function was not checked in H5EA_iterate(), H5FA_iterate(),
and H5D__none_idx_iterate(). This oversight caused a callback function
to continue iterating even though it's supposed to stop. Vailin confirmed.
- Addressed review comments and made various improvements on the tests.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1010test)
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Remove VOL-related merge cruft.
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Fix return value (int -> void).
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Platforms tested:
Linux/64 (jelly)
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develop
* commit '51076d40617aa6f0236809c2c919cc6921b3bbc1':
Fixed exit() to HDexit() in use_append_chunk.c and use_append_mchunks.c
Fixed fprintf to HDfprintf in the following routines: 1) read_uc_file() in use_common.c 2) main() of use_append_chunk.c and use_append_mchunks.c
Fix for HDFFV-10554 use_append_chunks in swmr use case test failure Fix the timing issue of the test by moving the open/close of the test file for the writer to use_append_chunk.c and use_append_mchunks.c.
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* commit 'ec72efcd4ddb17145323bf93c5cc28fc59695c55':
Improved comments
Removed an old comment line.
Moved tests to another file
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Description:
Moved the test function test_get_chunk_info from dsets.c to chunk_info.c
because chunk_info.c was created for the purpose of testing chunk information.
Platforms tested:
Linux/64 (jelly)
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Description:
- Addressed additional review comments
- Moved the test function test_get_chunk_info from dsets.c to chunk_info.c
because chunk_info.c was created for the purpose of testing chunk information.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1011test)
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Description:
- Per Vailin's review, revised H5Dget_chunk_info_by_coord to handle
non-existing chunk and H5Dget_num_chunks and H5Dget_chunk_info to
handle dataset with no data.
- Addressed other review comments
- Note that additional tests will be added as we need to send users
these functions asap for feedback.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1011test)
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Description:
Added functions to query chunk information:
H5Dget_num_chunks(dset_id, fspace_id, *nchunks)
Gets the number of written chunks that intersect with the given
dataspace. However, in this version, the intersection is not
yet completed. Thus, the number of all written chunks will be
returned.
H5Dget_chunk_info_by_coord(dset_id, *coord, *filter_mask, *addr, *size)
Given a chunk's coordinates, returns the chunk's filter, address,
and size.
H5Dget_chunk_info(dset_id, fspace_id, index, *coord, *filter_mask, *addr, *size)
Given a chunk's index, returns the chunk's coordinates, filter,
address, and size. The chunk belongs to a set of chunks that have
nonempty intersection with the specified dataspace. However, in
this version, the intersection is not yet completed, and the index
is of all the written chunks.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1011test)
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Commit Joe Lee's typo corrections for src/H5MF.c.
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Description:
Applied the typo fixes from user's report.
The previous pull request couldn't be merged because it was too old,
and it was too complicated for me to resolve conflicts.
Platform tested:
Linux/64 (jelly) - very minor
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Open the test file read-only so that it can be accessed for testing.
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~DEROBINS/hdf5_der:h5do_direct_chunk_hl_to_src to develop
* commit '1da9c5545c013ebc540ba3044810889d4acfa5be':
Restored some unused #defines to the deprecated section of H5Dpublic.h.
Added deprecated symbol wrappers for the H5DOwrite/read_chunk wrappers.
Updated commenting in the H5DO compat test.
Stripped out most of the duplicated functionality in the H5DO compat test.
* Added H5DO compatibility functions. * Changed the offset copy to use an array on the stack. * Yanked some unused #defines.
* Fixed the error tests * Moved common functionality into helper functions
Normalize with trunk prior to update merge
Fixed a warning.
Finished move of H5DOread/write_chunk calls to H5D.
First stage of moving H5DOread/write_chunk() to src/ and making them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform and renamed to direct_write_perf. * Updated autotools and CMake files.
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* Moved common functionality into helper functions
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them H5D calls.
* Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*.
* Moved the hl/test/test_dset_opt test to test/ and renamed to
direct_chunk.
* Moved the hl/test/dectris_hl_perf test to tools/test/perform
and renamed to direct_write_perf.
* Updated autotools and CMake files.
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* commit 'e8ece625f223032db0d26cfffafc045e4ccdf37d':
Normalize with vol_integration.
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(2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
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* commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits)
HDFFV-9739 only executes H5E tests in production
Remove link flag from compile command
fix typo
Add release note
Correct attribute location
HDFFV-9739 fix copy testfiles command
HDFFV-9739 remove obsolete test files
HDFFV-9739 dup test file for concurrent tests
HDFFV-9739 Fix autotools script
HDFFV-9739 Change autotools test scripts
Fix typo
HDFFV-9739 Update test reference
Update current windows test machines
HDFFV-9739 Grab err number before API call
HDFFV-9739 Add release note
Adjust test names for concurrent tests
Fix soversion
HDFFV-9739 Fix copy name
HDFFV-9739 factor out tests into separate JUnit
Updated the threadsafety test to use error macros instead of asserts.
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* commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits)
GGC requires attribute before function
Correct COMPILE defs usage
Add missing module_dir property
Text cleanup
Correct sentence punctuation.
Add release note.
Use set_property for MT flag
Correct command usage
Remove APPEND
Fix typo
Add missing test lib
add missing folder to path
Fix another command revert
Missed a command revert
Revert to old style for LINK_FLAGS gen expr not working
LINK_FLAGS must be separate property sets
Fix link flags syntax
Revert refactor link flags
refactor link flags to interface
Refactor link flags
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* commit '73d7f7e7d37b869ce9c39cc8e648ef50d563fc93':
Updated the threadsafety test to use error macros instead of asserts.
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of asserts.
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