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* | | | | | | | Changing output file names to avoid possible conflict during parallel build ↵Songyu Lu2019-04-191-6/+4
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* | | | | | | | Minor fix: marking an internal function of the test for export.Songyu Lu2019-04-181-1/+1
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* | | | | | | | Merge pull request #1654 in HDFFV/hdf5 from ↵Vailin Choi2019-04-181-46/+63
|\ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-10579-h5arename-function-fails-when to develop * commit '53a5c3be903ce7c24d02a6bd3a8d9b07a3f82404': Change the checking to H5I_INVALID_HID in test_attr_dense_rename(). Fix for HDFFV-10579 H5Arename fails when creation order of attributes is tracked. The attribute needs to be removed from the creation order index v2 B-tree before re-inserting the renamed attribute via H5A__dense_insert().
| * | | | | | | | Change the checking to H5I_INVALID_HID in test_attr_dense_rename().Vailin Choi2019-04-161-10/+10
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| * | | | | | | | Fix for HDFFV-10579 H5Arename fails when creation order of attributes is ↵Vailin Choi2019-04-121-38/+55
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | tracked. The attribute needs to be removed from the creation order index v2 B-tree before re-inserting the renamed attribute via H5A__dense_insert().
* | | | | | | | | Fix CMake errorsAllen Byrne2019-04-182-21/+33
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* | | | | | | | | Merge pull request #1600 in HDFFV/hdf5 from ↵Ray Lu2019-04-1811-441/+992
|\ \ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:HDFFV-10658-performance-drop-from-1-8 to develop * commit 'b5ef82a1786605ae86502bc82086047720b7d4ca': (21 commits) Moving the handling of null prefix into H5_combine_path. Changing the prefix of external file and VDS from empty string to null for performance improvement. Improving the condition checking of empty string. Replacing string operation strdup with assignment for empty string. Adding back links_env.out which I accidentally removed in my previous commit. Taking out two unnecessary diff output files. Taking out unnecessary diff files for output. Adding some comments. Some coding style changes. Adding the standard output files for the external_env.c and vds_env.c tests. Small correction for my previous commit. Forgot to add external_common.c and external_common.h. Updated CMake for the splitting of external.c and vds.c. Minor fix: removal of unnecessary enum values. Minor fixes: updating the test vds_env.c according to the set up of vds.c. Left out this file in previous commit. HDFFV-10658 - setting and getting properties in API context: 1. switched to use the existing H5F_prefix_open_t for enum type; 2. put the common private function used by external.c and external_env.c into external_common.c This commit basically has the following changes: 1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties. 2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables. 3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get. HDFFV-10658: I left out this file in my previous commit. HDFFV-10658: 1. moving HDgetenv to dataset initialization stage to reduce the overhead; 2. restoring the retrieval of three vol properties to H5P_get instead of using API context to prepare for Quincey's upcoming refactoring work. ...
| * | | | | | | | | Adding back links_env.out which I accidentally removed in my previous commit.Songyu Lu2019-04-151-0/+3
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| * | | | | | | | | Merge branch 'develop' of ↵Songyu Lu2019-04-151-0/+24
| |\ \ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
| * \ \ \ \ \ \ \ \ \ Merge branch 'HDFFV-10658-performance-drop-from-1-8' of ↵Songyu Lu2019-04-111-8/+0
| |\ \ \ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
| | * | | | | | | | | | Taking out two unnecessary diff output files.songyulu2019-04-113-131/+1
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| * | | | | | | | | | | Taking out unnecessary diff files for output.Songyu Lu2019-04-113-126/+1
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| * | | | | | | | | | Some coding style changes.Songyu Lu2019-04-115-13/+10
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| * | | | | | | | | | Adding the standard output files for the external_env.c and vds_env.c tests.Songyu Lu2019-04-113-2/+154
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| * | | | | | | | | | Small correction for my previous commit.Songyu Lu2019-04-111-2/+2
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| * | | | | | | | | | Forgot to add external_common.c and external_common.h.Songyu Lu2019-04-101-0/+2
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| * | | | | | | | | | Updated CMake for the splitting of external.c and vds.c.Songyu Lu2019-04-102-0/+108
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| * | | | | | | | | | Minor fixes: updating the test vds_env.c according to the set up of vds.c.Songyu Lu2019-04-101-7/+47
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| * | | | | | | | | | Merge branch 'develop' of ↵Songyu Lu2019-04-095-484/+1440
| |\ \ \ \ \ \ \ \ \ \ | | | |/ / / / / / / / | | |/| | | | | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
| * | | | | | | | | | Left out this file in previous commit.Songyu Lu2019-04-091-11/+10
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| * | | | | | | | | | HDFFV-10658 - setting and getting properties in API context:Songyu Lu2019-04-094-36/+57
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 1. switched to use the existing H5F_prefix_open_t for enum type; 2. put the common private function used by external.c and external_env.c into external_common.c
| * | | | | | | | | | Merge branch 'develop' of ↵Songyu Lu2019-04-087-165/+271
| |\ \ \ \ \ \ \ \ \ \ | | | |_|_|_|_|_|_|_|/ | | |/| | | | | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
| * | | | | | | | | | Merge branch 'develop' of ↵Songyu Lu2019-04-0417-240/+251
| |\ \ \ \ \ \ \ \ \ \ | | | |_|_|_|_|_|_|/ / | | |/| | | | | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
| * | | | | | | | | | This commit basically has the following changes:Songyu Lu2019-04-048-430/+792
| | |_|_|_|/ / / / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties. 2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables. 3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get.
* | | | | | | | | | HDFFV-10741 - remove SKIP_ERRSTK_TESTS optionAllen Byrne2019-04-151-15/+19
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* | | | | | | | | | Merge pull request #1652 in HDFFV/hdf5 from ↵Dana Robinson2019-04-152-3/+3
|\ \ \ \ \ \ \ \ \ \ | |_|_|_|_|/ / / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:check_passthrough_vol to develop * commit '9ee3d472113fc3e66ef34e40a0990ed07a2824bc': Renamed the HDF5_TEST_VOL option to HDF5_TEST_PASSTHROUGH_VOL. Renamed the autotools check-vol target to check-passthrough-vol.
| * | | | | | | | | Renamed the HDF5_TEST_VOL option to HDF5_TEST_PASSTHROUGH_VOL.Dana Robinson2019-04-112-3/+3
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* | | | | | | | | Add H5Fget_fileno() API routine.Quincey Koziol2019-04-121-0/+24
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* | | | | | | | Modifications based on PR feedback:Vailin Choi2019-04-081-0/+194
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (1) Add H5Sdeprec.c to src/CMakeLists.txt (2) Add test for H5Sencode1.
* | | | | | | | HDFFV-10365: Changes as described in the RFC: H5Sencode/H5Sdecode Format Change.Vailin Choi2019-04-065-485/+1247
| |_|/ / / / / |/| | | | | | | | | | | | | | | | | | | | This also addresses HDFFV-10255: H5Sencode/decode performance issue.
* | | | | | | Fix for HDFFV-10271 hyperslab encoding incorrect length.Vailin Choi2019-04-051-0/+79
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* | | | | | Set V112 as the latest format and extend the arrays of version bounds.Vailin Choi2019-04-046-165/+192
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* | | | | Merge remote-tracking branch 'origin/develop' into env_vol_loadQuincey Koziol2019-04-0311-65/+177
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| * \ \ \ \ Merge pull request #1610 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-03-242-4/+26
| |\ \ \ \ \ | | |_|_|_|/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr_fixbug:develop to develop * commit 'fe104cc38ffbdb39d3e04da107d86ebfc7e8b622': Test improvement Description Moved the new tests to a more appropriate test function. Platforms tested: Linux/64 (jelly) Fixed HDFFV-10210 and HDFFV-10587 Description: - Added parameter validation (HDFFV-10210) - Added detection of division by zero (HDFFV-10587 - CVE-2018-17438) - Fixed typos in various tests Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
| | * | | | Test improvementBinh-Minh Ribler2019-03-211-18/+25
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description Moved the new tests to a more appropriate test function. Platforms tested: Linux/64 (jelly)
| | * | | | Merge branch 'develop' of ↵Binh-Minh Ribler2019-03-2023-1550/+1443
| | |\ \ \ \ | | | | |/ / | | | |/| | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop
| | * | | | Fixed HDFFV-10210 and HDFFV-10587Binh-Minh Ribler2019-03-202-1/+16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Added parameter validation (HDFFV-10210) - Added detection of division by zero (HDFFV-10587 - CVE-2018-17438) - Fixed typos in various tests Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
| * | | | | Changes that show the right way to iterate over enums.Dana Robinson2019-03-211-6/+10
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| * | | | | Used the H5_INC_ENUM macro to squash enum value increment warnings.Dana Robinson2019-03-217-39/+39
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| * | | | Fix CMake error in nameAllen Byrne2019-03-191-2/+2
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| * | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Neil Fortner2019-03-151-1/+6
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| | * | | CMake: fix pthread linking to only be privateJerome Soumagne2019-03-131-1/+6
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| * | | Fix issue with direct chunk write not updating the "last chunk" indexNeil Fortner2019-03-061-20/+101
| |/ / | | | | | | | | | | | | cache. Fix issues involving datasets being "no allocated" when they contain cached raw data.
* | | Specify the default VOL connector to use with an environment variable.Quincey Koziol2019-03-107-175/+74
|/ / | | | | | | | | | | | | | | This implicitly adds support for changing the VOL connector for command-line tools or any application linked with the library. Also, add 'make check-vol' support for all directories, clearing up necessary issues in testing scripts, etc.
* | Correct varnameAllen Byrne2019-02-261-1/+1
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* | Revise "management" VOL callbacks into 'info' and object 'wrap / retrieval'Quincey Koziol2019-02-231-10/+14
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* | Merge pull request #1569 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:topic_threadsafe ↵Jerome Soumagne2019-02-221-1/+1
|\ \ | | | | | | | | | | | | | | | | | | to develop * commit 'bcf5c400c06bf06820b25c37eceaa97245f15f1f': Fix CMake H5_HAVE_THREADSAFE to set value in H5pubconf.h
| * | Fix CMake H5_HAVE_THREADSAFE to set value in H5pubconf.hJerome Soumagne2019-02-211-1/+1
| | | | | | | | | | | | | | | | | | Add REQUIRED to find_package(Threads) Link against thread library if static and not WIN32 platform
* | | Merge branch 'develop' into c_stdlib_posix_call_cleanupDana Robinson2019-02-1914-1427/+1295
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-02-171-366/+0
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '5ad3891d9b861593ebe25d540bed2d913eb83aba': Remove ' ' (typo). Code improvement Removed an extra "using" statement Adding documentation More changes to align with incoming selection improvements. Added C++ wrapper for H5Ovisit2 Adding a C++ wrapper
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