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* Change thread IDs to uint64_t from unsigned long, per Quincey's suggestion.David Young2020-02-032-6/+7
| | | | | Fix a typo in the H5TS_thread_init() comment and reword some ID properties.
* Add thread_id.c to the MANIFEST and the CMakeLists.txt per Allen'sDavid Young2020-02-031-0/+1
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* Replace pthread_self_ulong() with H5TS_thread_id(). The POSIX ThreadsDavid Young2020-02-033-4/+164
| | | | | implementation ought to be portable to any system that has POSIX Threads. On Windows, I use the same API call as before.
* Merge branch 'develop' into misckmu2020-01-2913-70/+153
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| * Merge pull request #2318 in HDFFV/hdf5 from ↵David Young2020-01-296-27/+18
| |\ | | | | | | | | | | | | | | | | | | ~DYOUNG/werror:reduce-werror-diffs-1 to develop * commit 'fa1b2f6ef35c459c9f74ead885c119ae7f61c056': Reduce differences between my -Werror branch and `develop`:
| | * Reduce differences between my -Werror branch and `develop`:David Young2020-01-296-27/+18
| | | | | | | | | | | | | | | | | | | | | | | | Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC shadowed declaration warnings about index(3). Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
| * | Merge pull request #2320 in HDFFV/hdf5 from ↵David Young2020-01-291-1/+1
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | ~DYOUNG/werror:reduce-werror-diffs-2 to develop * commit 'a5f236e83bdd29e660a55c5577a69a3809605cda': Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.
| | * | Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.David Young2020-01-291-1/+1
| | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Reduce gratuitous casts---e.g., (size_t)1. Use the right format string for a pointer. In the H5C sanity checks, change a "size increase" variable from ssize_t (too narrow) to int64_t (wide enough). Parenthesize every appearance of `storage` in the macro `H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an expression like &sc and it works properly. Disallow re-assignment of the `dset` parameter to H5D__chunk_init() because it helped assure me that it's safe to replace the repeating expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout. Replace lengthy expressions such as `&dset->shared->layout.storage.u.chunk` with `sc` throughout several functions in H5Dchunk.c ISTR that the compiler warned that `sc` was declared but unused in a couple of functions, and then I found that `sc` could be used in many places. Maybe the disused `sc` appeared because a bunch of code was copied and pasted, I don't know. Anyway, it's a lot tighter code now that I use `sc`. In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete() I actually expand `sc` and another temporary variable, `pline`, because they're used only in !defined(NDEBUG) code. This squashes unused-variable warnings in the defined(NDEBUG) configuration. Don't drop the `volatile` qualification with a cast in tools/src/h5import/h5import.c.
| * | Merge pull request #2321 in HDFFV/hdf5 from ↵David Young2020-01-295-25/+34
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | ~DYOUNG/werror:reduce-werror-diffs-3 to develop * commit 'f19e06b59ee53f17465a7b5974c25c3245a40d9a': testpar/t_2Gio.c: Fix a typo that I think was introduced by a previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2].
| | * | testpar/t_2Gio.c: Fix a typo that I think was introduced by aDavid Young2020-01-295-25/+34
| | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2]. fortran/src/H5Pf.c: move conditional compilation controlled by H5_NO_DEPRECATED_SYMBOLS outside of a function for readability. fortran/src/H5match_types.c: put a variable's declaration under the same conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its use. For now, skip compilation of some unused debug dump routines in the JNI. While I'm in the JNI, delete a set-but-unused variable. src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS so that it's not declared but unused or vice versa. test/cache_common.h: add an #include in to get some symbols we need to avoid implicit declaration warnings. test/dsets.c: use a more conventional conditional-compilation syntax. test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized variables before use. test/vfd.c: pass the expected type of `void **` to posix_memalign(3) instead of `int **`. testpar/t_bigio.c: explicitly compare with 0 instead of using ! when "equal to 0?" is the question not "is false?" Repair some indentation while I'm here. testpar/testpar.h: repair misaligned line-continuation backslashes in a macro that probably should be a function so that we don't have to fiddle with the line continuation to begin with. tools/src/h5repack/h5repack_main.c: fix some compiler fussing about enums. tools/test/perform/pio_engine.c: the compiler fusses if you cast a function call returning double directly to off_t. It's ok if you cast a variable that's a double to off_t, however. Write and use a new function, sqrto(), to avoid the cast warnings.
| * | Introduce new H5VL _by_value routinesJordan Henderson2020-01-292-17/+100
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* | initialization discards const warningkmu2020-01-291-7/+7
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* | Merge branch 'develop' into misckmu2020-01-286-27/+34
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| * Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to developKimmy Mu2020-01-281-19/+19
| |\ | | | | | | | | | | | | | | | | | | | | | | | | * commit '406330addf45529ecdd088f4d22e9aab9a03661d': rename macro change condition pick up from Dave's fix leave Wswitch-default for later fix fix Wredundant-decls, Wswitch-default, Wdeclaration-after-statement, Wsign-compare, Wmisleading-indentation, Wshadow
| * | Cleaned up warnings in test/tid.c.Dana Robinson2020-01-241-9/+16
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| * | Revert "Revert "Moved -Wunsuffixed-float-constants to the developer warnings.""Dana Robinson2020-01-235-18/+18
| | | | | | | | | | | | This reverts commit 6486e06545bf637d46e18a787395542f4fca143a.
* | | fix unused function warningkmu2020-01-282-40/+69
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* | fix Wredundant-decls, Wswitch-default, Wdeclaration-after-statement, ↵kmu2020-01-271-19/+19
|/ | | | Wsign-compare, Wmisleading-indentation, Wshadow
* squash cast warning fixkmu2020-01-237-47/+64
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* Merge pull request #2094 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/unused to developKimmy Mu2020-01-2310-77/+66
|\ | | | | | | | | | | | | | | | | | | | | * commit '145ef3ceee20c28a443bd11507c58858bea3f889': more cleanup change it back pick up missing piece fix unused related warnings removed unused parameter more fix and address comments remove unsed var,function,macro, etc
| * more cleanupkmu2020-01-234-9/+6
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| * merge and fixkmu2020-01-2140-1992/+7403
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| * \ merge and fix conflictkmu2020-01-1912-39/+118
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| * \ \ merge and fix conflictskmu2020-01-1426-1091/+1278
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| * | | | fix unused related warningskmu2020-01-1311-61/+107
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| * | | | removed unused parameterkmu2019-12-111-1/+1
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| * | | | more fix and address commentskmu2019-12-091-12/+3
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| * | | | remove unsed var,function,macro, etckmu2019-12-064-55/+20
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* | | | | Fixed yet another small issue in test/efc.c.Dana Robinson2020-01-211-6/+6
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* | | | PATH_MAX fix in efc test for Windows.Dana Robinson2020-01-201-0/+5
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* | | | Merge branch 'develop' into stack_size_warningsDana Robinson2020-01-1735-1535/+6520
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| * | | | Squashed commit of the token_refactoring branch:Dana Robinson2020-01-1633-1534/+6434
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| * | | Merge pull request #2237 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:HDFFV-10992-fix ↵Jerome Soumagne2020-01-151-0/+83
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit 'a7648879d729c1b75bd32f3a151831e9cbfbe31c': Add test for reference shutdown issue H5R: set app ref when incrementing ref_count on location held by reference (fix HDFFV-10992)
| | * | | Add test for reference shutdown issueJerome Soumagne2020-01-151-0/+83
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| * | | | HDFFV-11001 Add fine control over testingAllen Byrne2020-01-152-2/+4
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* | | | Tidying from code review.Dana Robinson2020-01-161-6/+20
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* | | | Fixed stack and frame size warnings. Not complete, but fixes most ofDana Robinson2020-01-1510-435/+977
|/ / / | | | | | | | | | the easier cases.
* | | Modify external_env.c to prevent deleting test file of external.c.Larry Knox2020-01-091-2/+1
|/ / | | | | | | Fix for HDFFV-10941.
* | Merge pull request #2071 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings ↵Kimmy Mu2020-01-066-19/+19
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '0a2bb11b248df6841daabca3970df5d8504adfc7': address problems from comments fix and address comments change according to previous comments add missing piece remove unnecessary check macro fix intel compile warnings Revert "fix warnings from Intel compiler" Revert "fix warnings and some text alignment" Revert "let hdf5 pick up the right compiler in Intel environment" Revert "fix issues from previous PR comments" Revert "using a different MACRO" using a different MACRO fix issues from previous PR comments let hdf5 pick up the right compiler in Intel environment fix warnings and some text alignment fix warnings from Intel compiler
| * | address problems from commentskmu2019-12-111-2/+0
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| * | fix and address commentskmu2019-12-112-7/+10
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| * | Merge branch 'develop' into bugfix/intel_warningskmu2019-12-0943-329/+264
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| * | remove unnecessary check macrokmu2019-12-063-8/+7
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| * | fix intel compile warningskmu2019-12-046-16/+16
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| * | Oops, remove more C99 designated initializers for VS 2010 compatibility.David Young2019-11-251-2/+6
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| * | Add new source files to CMakeLists.txt.David Young2019-11-201-0/+2
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| * | free -> HDfreeDavid Young2019-11-201-1/+1
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| * | Quiet decleration-after-statement warnings.David Young2019-11-131-5/+4
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| * | Undo accidental test deletion.David Young2019-11-131-1/+1
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| * | Oops, delete a debug printf that snuck in here.David Young2019-11-131-1/+0
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