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backward compatibility.
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to 1.10 branch:
HDFFV-10571: Divided by Zero vulnerability.
HDFFV-10601: Issues with chunk cache hash value calcuation.
HDFFV-10607: Patches for warnings in the core libraries.
HDFFV-10635: HDF5 library segmentation fault with H5Sselect_element.
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Description:
Renamed data file with long name to a shorter name.
Revised an entry in RELEASE.txt
Platforms tested:
Linux/64 (jelly)
Darwin (osx1010test)
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https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_1_10_bmr into hdf5_1_10
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~SONGYULU/hdf5_ray:TRILAB-98-dt_arith-and-cpp_testhdf5-tests to develop
* commit 'b02de315b93ac29d2483a91d526b110a25073505':
NNSA Tri-LabsTRILAB-98: Another two test cases out.
NNSA Tri-Labs TRILAB-98: Taking out a few more test cases.
NNSA Tri-Labs TRILAB-98 dt_arith and cpp_testhdf5 tests fail on sierra.llnl.gov: According to the group decision, simply provide a macro to disable some failing test cases on sierra (IBM power9 cpu). All failing cases involve long double data type.
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Description:
HDFFV-10586 CVE-2018-17434 Divide by zero in h5repack_filters
Added a check for zero value
HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper
This is actually an Invalid read issue. It was found that the
attribute name length in an attribute message was corrupted,
which caused the buffer pointer to be advanced too far and later
caused an invalid read.
Added a check to detect attribute name and its length mismatch. The
fix does not cover all cases, but it'll reduce the chance of this issue
when a name length is corrupted or the attribute name is corrupted.
HDFFV-10684 H5Ewalk does not stop until all errors in the stack are visited
The test for HDFFV-10588 has revealed a bug in H5Ewalk.
H5Ewalk did not stop midway even when the call back function returns
H5_ITER_STOP. This is because a condition is missing from the for
loops in H5E__walk causing the callback functions unable to stop until
all the errors in the stack are iterated. Quincey advised on the final
fix. In this fix, "status" is switched to "ret_value" and HGOTO_ERROR
to HERROR, and the for loops won't continue when "ret_value" is not 0.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1011test)
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the message type until we've verified we understand the message type.
Reduce size of H5O_msg_class_g to *not* include space for
H5O_BOGUS_INVALID. Make bogus messages shareable. Add new bogus
message test with shareable messages to cover the formerly problematic
code. Re-run gen_bogus.c to add this test case and also to fix the
bogus_invalid messages that were no longer H5O_BOGUS_INVLAID due to a
new message class being added in a previous commit. Added comment to
remind developers to run gen_bogus.c when adding a new message class.
Remove H5O_BOGUS_INVALID_ID from H5O_msg_class_g initialization, since
space for it was removed.
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~JAKE.SMITH/hdf5:dset_ohdr_minimize_110 to hdf5_1_10
* commit '00f835f6403728c3caf298636522e526996010a2':
Fix fapl passed into h5_fixname() calls in minimized tests. Fix creation of duplicate, unclosed FAPL. Fix wrong statement-string after TEST_ERROR macro (refactoring mistake).
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Fix creation of duplicate, unclosed FAPL.
Fix wrong statement-string after TEST_ERROR macro (refactoring mistake).
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hdf5_1_10
* commit '1a50622733c14d89b3fd8c6bab684af9205a3b96':
Fix for daily test failure: too many arguments to function 'H5Gopen1'.
Fix the git merge leftover in RELEASE.txt.
Fix the git merge leftovers in RELEASE.txt.
Fix for HDFFV-10659: The library aborts with "infinite loop closing library" after deleting attributes in densed storage. The fix: When deleting attribute nodes from the name index v2 B-tree, if an attribute is found in the intermediate B-tree nodes, which may be merged/redistributed in the process, we need to free the dynamically allocated spaces for the intermediate decoded attribute.
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after deleting attributes in densed storage.
The fix: When deleting attribute nodes from the name index v2 B-tree,
if an attribute is found in the intermediate B-tree nodes, which may be
merged/redistributed in the process, we need to free the dynamically
allocated spaces for the intermediate decoded attribute.
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https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_1_10_bmr into hdf5_1_10
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Formerly arguments to FAIL_PUTS_ERROR.
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https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into dset_ohdr_minimize_110
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~BMRIBLER/hdf5_1_10_bmr:hdf5_1_10 to hdf5_1_10
This is merged now so it can be tested.
* commit '74a3710a996fca5ed7fcb4dd8919a7a8521de1de':
Revised per review. Description: Changed H5EA_iterate and H5FA_iterate as suggested. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
Addressed HDFFV-10661 Description: - Fixed a bug triggered by tests in chunk_info.c. The returned value from a callback function was not checked in H5EA_iterate(), H5FA_iterate(), and H5D__none_idx_iterate(). This oversight caused a callback function to continue iterating even though it's supposed to stop. Vailin confirmed. - Addressed review comments and made various improvements on the tests. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
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Remove VOL-related merge cruft.
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Fix return value (int -> void).
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Description:
Fixed HDFFV-10577 and similar issues found in H5Dchunk.c. All
the occurrences are in:
H5D__create_chunk_map_single
H5D__create_chunk_file_map_hyper
H5D__chunk_allocate
H5D__chunk_update_old_edge_chunks
H5D__chunk_prune_by_extent
H5D__chunk_copy_cb
H5D__chunk_collective_fill
Also updated RELEASE.txt for the chunk query functions and removed
some blank lines in chunk_info.c.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
- Fixed a bug triggered by tests in chunk_info.c. The returned value
from a callback function was not checked in H5EA_iterate(), H5FA_iterate(),
and H5D__none_idx_iterate(). This oversight caused a callback function
to continue iterating even though it's supposed to stop. Vailin confirmed.
- Addressed review comments and made various improvements on the tests.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1010test)
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Platforms tested:
Linux/64 (jelly)
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develop
* commit '51076d40617aa6f0236809c2c919cc6921b3bbc1':
Fixed exit() to HDexit() in use_append_chunk.c and use_append_mchunks.c
Fixed fprintf to HDfprintf in the following routines: 1) read_uc_file() in use_common.c 2) main() of use_append_chunk.c and use_append_mchunks.c
Fix for HDFFV-10554 use_append_chunks in swmr use case test failure Fix the timing issue of the test by moving the open/close of the test file for the writer to use_append_chunk.c and use_append_mchunks.c.
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* commit 'ec72efcd4ddb17145323bf93c5cc28fc59695c55':
Improved comments
Removed an old comment line.
Moved tests to another file
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Description:
Moved the test function test_get_chunk_info from dsets.c to chunk_info.c
because chunk_info.c was created for the purpose of testing chunk information.
Platforms tested:
Linux/64 (jelly)
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Description:
- Addressed additional review comments
- Moved the test function test_get_chunk_info from dsets.c to chunk_info.c
because chunk_info.c was created for the purpose of testing chunk information.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1011test)
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Description:
- Per Vailin's review, revised H5Dget_chunk_info_by_coord to handle
non-existing chunk and H5Dget_num_chunks and H5Dget_chunk_info to
handle dataset with no data.
- Addressed other review comments
- Note that additional tests will be added as we need to send users
these functions asap for feedback.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1011test)
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Description:
Added functions to query chunk information:
H5Dget_num_chunks(dset_id, fspace_id, *nchunks)
Gets the number of written chunks that intersect with the given
dataspace. However, in this version, the intersection is not
yet completed. Thus, the number of all written chunks will be
returned.
H5Dget_chunk_info_by_coord(dset_id, *coord, *filter_mask, *addr, *size)
Given a chunk's coordinates, returns the chunk's filter, address,
and size.
H5Dget_chunk_info(dset_id, fspace_id, index, *coord, *filter_mask, *addr, *size)
Given a chunk's index, returns the chunk's coordinates, filter,
address, and size. The chunk belongs to a set of chunks that have
nonempty intersection with the specified dataspace. However, in
this version, the intersection is not yet completed, and the index
is of all the written chunks.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1011test)
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Commit Joe Lee's typo corrections for src/H5MF.c.
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Description:
Applied the typo fixes from user's report.
The previous pull request couldn't be merged because it was too old,
and it was too complicated for me to resolve conflicts.
Platform tested:
Linux/64 (jelly) - very minor
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Open the test file read-only so that it can be accessed for testing.
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