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* Merge branch 'develop' into bugfix/repack_external_storageJacob Smith2019-06-2014-1105/+2133
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| * Fix memory leak in objcopy test after H5Aread of vlen dataJerome Soumagne2019-06-191-1/+27
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| * Merge pull request #1750 in HDFFV/hdf5 from ↵Dana Robinson2019-06-191-202/+150
| |\ | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:ohdr_test_memory_issue to develop * commit '6a1e9a1fbe9606d0dd3452092cab17794e131e64': Fixed a problem in the ohdr test where hard-coded strings passed to H5Awrite() triggered -fsanitize failures.
| | * Fixed a problem in the ohdr test where hard-coded strings passedDana Robinson2019-06-191-202/+150
| | | | | | | | | | | | to H5Awrite() triggered -fsanitize failures.
| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-06-181-0/+748
| |\ \ | | |/ | | | | | | | | | | | | | | | | | | * commit '712a2a13d8add828d053135a172abb2e819d59ad': Fixed a warning in H5CX.c concerning incorrect use of freeing VOL connector info. Add H5S_SEL_ITER_SHARE_WITH_DATASPACE selection iterator creation flag, to share dataspace's selection with iterator (and with caution about not modifying or closing the dataspace while the iterator is open). Fix misc. typos, etc. from code review New hyperslab selection routines and new public selection iterator routines.
| | * Add H5S_SEL_ITER_SHARE_WITH_DATASPACE selection iterator creation flag, toQuincey Koziol2019-06-171-171/+182
| | | | | | | | | | | | | | | share dataspace's selection with iterator (and with caution about not modifying or closing the dataspace while the iterator is open).
| | * Merge branch 'develop' into merge_hyperslab_04Quincey Koziol2019-06-174-5/+91
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| | * | New hyperslab selection routines and new public selection iterator routines.Quincey Koziol2019-06-161-0/+737
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| * | | HDFFV-10805 Add option to only build shared targetsAllen Byrne2019-06-184-827/+169
| | |/ | |/| | | | | | | | | | HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static HDFFV-10803 Update FindSZIP.cmake find module Remove unneeded modules and update java modules
| * | Merge pull request #1729 in HDFFV/hdf5 from ↵Vailin Choi2019-06-174-4/+90
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-10800-h5ocopy-failure to develop * commit 'dfdc27b04b2e8bcd1985ba90ce6553d8b3805fda': Fix release notes based on feedback from pull request. Fix for HDFFV-10800 H5Ocopy failure: The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format version bounds array for fill value message, should be version 3 not 2.
| | * | Fix for HDFFV-10800 H5Ocopy failure:Vailin Choi2019-06-124-4/+90
| | | | | | | | | | | | | | | | | | | | The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format version bounds array for fill value message, should be version 3 not 2.
| * | | Fixed problem with H5Fdelete "test" and split VFD.Dana Robinson2019-06-161-1/+1
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| * | Added the creation and use of an attribute access property list toDana Robinson2019-06-151-49/+60
| | | | | | | | | | | | testhdf5.
| * | Merge branch 'develop' into vol_dev_headersDana Robinson2019-06-143-20/+880
| |\ \ | | | | | | | | | | | | | | | | Also moved the wrapper functions from the H5VLconnector.h to H5VLconnector_passthru.h
| | * | Added H5Fdelete call and VOL support (but no VFD/native implementation).Dana Robinson2019-06-111-0/+107
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| | * Added a VOL initialization property list type.Dana Robinson2019-06-051-14/+37
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| | * Refactor H5S__hyper_project_intersection to operate directly on spanNeil Fortner2019-06-011-1/+719
| | | | | | | | | | | | | | | trees, improving performance and removing the conditionn that the extents be equal.
| | * Added code that disallows unregistering the native VOL connector.Dana Robinson2019-05-241-6/+18
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| * | Split VOL connector routines into separate headers:Dana Robinson2019-05-241-0/+7
| |/ | | | | | | | | | | | | | | | | * H5VLconnector.h for terminal connector things * H5VLconnector_passthru.h for passthrough connector things Note that these headers are arranged such that they are included in hdf5.h so VOL connectors only need to include that. The separation into multiple headers is mainly for readability.
| * Correct message command syntaxAllen Byrne2019-05-171-2/+2
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* | Some minor reformatting.Jacob Smith2019-05-241-193/+241
| | | | | | | | Replace tabs with spaces.
* | Add test that uses the family member FAPL setting.Jacob Smith2019-05-241-0/+112
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* Merge pull request #1605 in HDFFV/hdf5 from merge_hyperslab_update_01 to developQuincey Koziol2019-04-301-89/+1309
|\ | | | | | | | | | | | | * commit '08b009cc4ab2a8d8d289697d6d4688c0e5c53c6e': Clean up if-else chain. Remove thread-local copy of hyperslab operation generation value. Core changes to selection code from the hyperslab_updates branch.
| * Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01Quincey Koziol2019-04-2923-1111/+2848
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| * \ Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01Quincey Koziol2019-04-061-0/+79
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| * \ \ Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01Quincey Koziol2019-04-056-165/+192
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| * \ \ \ Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01Quincey Koziol2019-04-048-178/+99
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| * \ \ \ \ Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01Quincey Koziol2019-03-237-39/+43
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| * \ \ \ \ \ Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01Quincey Koziol2019-03-201-2/+2
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| * \ \ \ \ \ \ Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01Quincey Koziol2019-03-172-21/+107
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| * | | | | | | | Core changes to selection code from the hyperslab_updates branch.Quincey Koziol2019-03-161-89/+1309
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* | | | | | | | | Missed an env check before strcmp.Dana Robinson2019-04-291-1/+1
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* | | | | | | | Merge pull request #1677 in HDFFV/hdf5 from ↵Dana Robinson2019-04-263-106/+226
|\ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:is_accessible_test_love to develop * commit 'e66bf948a7acba0ddc76239f6d02f17c8b10eb0f': Fix for split VFD and file cleanup when testing H5Fis_hdf5 and H5Fis_accessible in tfile.c. Improvements to the H5Fis_accessible() and H5Fis_hdf5() tests in tfile.c. * General code tidying. * Expanded tests to work with multi-file VFDs.
| * | | | | | | | Fix for split VFD and file cleanup when testing H5Fis_hdf5Dana Robinson2019-04-262-4/+32
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | and H5Fis_accessible in tfile.c.
| * | | | | | | | Improvements to the H5Fis_accessible() and H5Fis_hdf5() testsDana Robinson2019-04-253-106/+198
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | in tfile.c. * General code tidying. * Expanded tests to work with multi-file VFDs.
* | | | | | | | | Merge pull request #1678 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-04-262-2/+38
|\ \ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'e2eaac93386feadef194962cb258e660038d39f1': ESE-97 add vol_plugin test to CMake builds
| * | | | | | | | | ESE-97 add vol_plugin test to CMake buildsAllen Byrne2019-04-252-2/+38
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* | | | | | | | | HDFFV-10760 Skipping external_env.c and vds_env.c for CMake to do VOL check ↵Songyu Lu2019-04-252-0/+4
|/ / / / / / / / | | | | | | | | | | | | | | | | | | | | | | | | and VFD check. Temporarily skipping external_env.c and vds_env.c for VFD check and VOL check in CMake following the example of links_env. Leave them for future work.
* | | | | | | | Changing file names and directory names to avoid possible conflict during ↵Songyu Lu2019-04-232-3/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | parallel 'make check'.
* | | | | | | | Merge pull request #1666 in HDFFV/hdf5 from ~KOZIOL/hdf5:unwrap_vol_callback ↵Quincey Koziol2019-04-232-10/+16
|\ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '62198c2436ac3787afb49fa990d1ba8204264dba': Add an 'unwrap' VOL callback, so that connectors can unwrap an underlying object without closing it. (Especially needed for pass-through connectors)
| * | | | | | | | Add an 'unwrap' VOL callback, so that connectors can unwrap an underlyingQuincey Koziol2019-04-212-10/+16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | object without closing it. (Especially needed for pass-through connectors)
* | | | | | | | | Changing file names to avoid possible conflicts during parallel test.Songyu Lu2019-04-224-23/+27
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* | | | | | | | Changing output file names to avoid possible conflict during parallel build ↵Songyu Lu2019-04-191-6/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | and test, especially on jelly.
* | | | | | | | Minor fix: marking an internal function of the test for export.Songyu Lu2019-04-181-1/+1
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* | | | | | | | Merge pull request #1654 in HDFFV/hdf5 from ↵Vailin Choi2019-04-181-46/+63
|\ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-10579-h5arename-function-fails-when to develop * commit '53a5c3be903ce7c24d02a6bd3a8d9b07a3f82404': Change the checking to H5I_INVALID_HID in test_attr_dense_rename(). Fix for HDFFV-10579 H5Arename fails when creation order of attributes is tracked. The attribute needs to be removed from the creation order index v2 B-tree before re-inserting the renamed attribute via H5A__dense_insert().
| * | | | | | | | Change the checking to H5I_INVALID_HID in test_attr_dense_rename().Vailin Choi2019-04-161-10/+10
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| * | | | | | | | Fix for HDFFV-10579 H5Arename fails when creation order of attributes is ↵Vailin Choi2019-04-121-38/+55
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | tracked. The attribute needs to be removed from the creation order index v2 B-tree before re-inserting the renamed attribute via H5A__dense_insert().
* | | | | | | | | Fix CMake errorsAllen Byrne2019-04-182-21/+33
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* | | | | | | | | Merge pull request #1600 in HDFFV/hdf5 from ↵Ray Lu2019-04-1811-441/+992
|\ \ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:HDFFV-10658-performance-drop-from-1-8 to develop * commit 'b5ef82a1786605ae86502bc82086047720b7d4ca': (21 commits) Moving the handling of null prefix into H5_combine_path. Changing the prefix of external file and VDS from empty string to null for performance improvement. Improving the condition checking of empty string. Replacing string operation strdup with assignment for empty string. Adding back links_env.out which I accidentally removed in my previous commit. Taking out two unnecessary diff output files. Taking out unnecessary diff files for output. Adding some comments. Some coding style changes. Adding the standard output files for the external_env.c and vds_env.c tests. Small correction for my previous commit. Forgot to add external_common.c and external_common.h. Updated CMake for the splitting of external.c and vds.c. Minor fix: removal of unnecessary enum values. Minor fixes: updating the test vds_env.c according to the set up of vds.c. Left out this file in previous commit. HDFFV-10658 - setting and getting properties in API context: 1. switched to use the existing H5F_prefix_open_t for enum type; 2. put the common private function used by external.c and external_env.c into external_common.c This commit basically has the following changes: 1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties. 2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables. 3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get. HDFFV-10658: I left out this file in my previous commit. HDFFV-10658: 1. moving HDgetenv to dataset initialization stage to reduce the overhead; 2. restoring the retrieval of three vol properties to H5P_get instead of using API context to prepare for Quincey's upcoming refactoring work. ...
| * | | | | | | | | Adding back links_env.out which I accidentally removed in my previous commit.Songyu Lu2019-04-151-0/+3
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