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* [svn-r157] Reformatted code with indent...Quincey Koziol1998-01-1613-2944/+2825
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* [svn-r155] Changes since 19980114Robb Matzke1998-01-162-21/+25
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./html/Datasets.html Removed some archaic comments about data spaces. Fixed example code. ./MANIFEST ./html/H5.format.html ./src/H5O.c ./src/H5Oprivate.h ./src/H5Ocstore.c [DELETED] ./src/H5Oistore.c [DELETED] ./src/H5Olayout.c [NEW] ./src/Makefile.in ./test/istore.c Replaced H5O_CSTORE and H5O_ISTORE messages with a more general H5O_LAYOUT message. ./src/H5D.c ./src/H5Dprivate.h ./src/H5Dpublic.h A little more work on the pipeline. Access to the file data is through the new H5F_arr_read() and H5F_arr_write() which do I/O on hyperslabs of byte arrays and don't depend on data layout. This should simplify the I/O pipeline quite a bit. I also added another argument to H5Dread() and H5Dwrite() to describe the hyerslab of the file array on which I/O is occuring. We discussed this at last week's meeting. ./src/H5Farray.c [NEW] Added functions that sit on top of H5F_block_read() and H5F_istore_read() and implement a common set of functions between all layouts. This means I/O of hyperslabs of byte-arrays in the file to arrays of bytes in memory. When operating on arrays of elements (>1byte) then we just add another dimension. That is, a 10x20 array of int32 becomes a 10x20x4 array of bytes. [This is the area I'll be working on most of next week to implement partial I/O for contiguous data and to improve performance for chunked data.] ./src/H5Fistore.c ./src/H5Fprivate.h Replaced the H5F_istore_t data type with the layout message H5O_layout_t which looks almost the same. Eventually I'd like to rename `istore' to `chunked' everywhere and use `istore' for 1-d storage where the chunks are all different sizes like in the small object heap where each object is a chunk. ./src/H5V.c Changed ISTORE to LAYOUT in one place. ./test/dsets.c Fixed for extra argument to H5Dread() and H5Dwrite().
* [svn-r153] Changes since 19980108Robb Matzke1998-01-141-0/+87
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./src/H5Dconv.c [REMOVED] ./src/H5Tconv.c [NEW] ./src/Makefile.in Changed H5Dconv.c to H5Tconv.c ./html/Datatypes.html Updated data type conversion section. ./html/H5.apiv2.html Removed sections about datasets and data types since they're covered in their own chapters. ./src/H5D.c Supports data type conversion. ./src/H5Odtype.c ./src/H5Tpkg.h Changed `lo_pad' and `hi_pad' to `lsb_pad' and `msb_pad'. ./src/H5T.c ./src/H5Tpkg.h ./src/H5Tprivate.h ./src/H5Tpublic.h ./src/H5detect.c Added predefined data types. Added query/set more properties. Added type conversion infrastructure. ./test/dsets.c Tests data type conversion during read.
* [svn-r152] Changes since 19980107Robb Matzke1998-01-091-1/+86
| | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./html/Datatypes.html Updated to match code. ./src/H5Odtype.c ./src/H5Oprivate.h ./src/H5Tpkg.h ./src/H5detect.c Changed H5T_FIXED to H5T_INTEGER. ./src/H5T.c ./src/H5Tprivate.h ./src/H5Tpublic.h ./test/dtypes.c Implemented lots of type properties. ./src/H5detect.c ./src/H5Tpublic.h It is no longer necessary to call H5init() before using a predefined data type.
* [svn-r151] Changes since 19980105Robb Matzke1998-01-075-149/+115
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/freebsd2.2.1 ./config/linux Added -UH5O_DEBUG to the debug flags. Turn this on to get lots of lines on stderr to show what objects are opened and closed. ./src/H5C.o ./src/H5Cpublic.h ./test/dsets.c ./test/tfile.c Split H5Cget_prop() and H5Cset_prop() into functions for each property. ./src/H5D.c ./src/H5Dpublic.h ./src/H5Gstab.c ./src/H5O.c ./src/H5Ocont.c ./src/H5Ocstore.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Oistore.c ./src/H5Oname.c ./src/H5Onull.c ./src/H5Oprivate.h ./src/H5Osdspace.c ./src/H5Ostab.c ./src/H5P.c ./src/istore.c ./test/tohdr.c Object header functions now understand constant vs. non-constant messages. ./src/H5F.c ./src/H5Fprivate.h The file OID can be closed before other OID's. ./src/H5Flow.c H5F_addr_defined() is a macro in this file. ./src/H5G.c ./src/H5Gpublic.h ./test/tstab.c A current working group cannot be deleted. ./src/H5Gent.c ./src/H5Gpkg.h Removed unused functionality. ./src/H5public.h Includes <sys/types.h> for size_t.
* [svn-r150] Changes since 19971219Robb Matzke1998-01-064-120/+126
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5private.h Changed HDF5_MAJOR_VERSION to 5 ./src/H5Aprivate.h ./src/H5Apublic.h Added group atoms. ./src/H5D.c ./src/H5P.c ./test/istore.c ./test/tohdr.c ./test/tstab.c Updated for symbol table interface changes. ./src/H5F.c ./src/H5Fprivate.h Simpler handling of special case files: empty files and files with a single object. ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5Gpublic.h ./src/H5Gshad.c (DELETED) ./src/H5Gstab.c ./src/Makefile.in Removed shadows, simplifying code. Symbol table entries are allowed to cache only constant meta data. Fixed naming. ./src/H5O.c ./src/H5Oprivate.h Access to object headers is always done through a symbol table entry instead of a file address. Added stubs for opening and closing object headers to be used when deletion is implemented.
* [svn-r149] ./test/istore.cRobb Matzke1997-12-191-4/+5
| | | | Flipped a couple constants for testing. Nothing important.
* [svn-r147] ./test/dsets.cRobb Matzke1997-12-165-5/+21
| | | | | | | | | | | ./test/dtypes.c ./test/hyperslab.c ./test/istore.c Added a definition for __FUNCTION__. Changed a couple variable types. ./test/testhdf5.h The error stack is printed when something goes wrong.
* [svn-r143] ./test/dsets.cRobb Matzke1997-12-114-95/+153
| | | | | | | | | | | | Added test for creation of chunked datasets. ./test/dsets.c ./test/istore.c ./test/tfile.c Template changes. ./test/th5p.c Accommodated changes to H5P.
* [svn-r140] ./test/Makefile.inRobb Matzke1997-12-1012-455/+530
| | | | | | | | | | | | | | | | | | | | | | | | | Added new tests. ./test/dsets.c NEW Tests datasets. ./test/dspace.c NEW Tests data spaces. ./test/dtypes.c NEW Tests data types. ./test/istore.c ./test/tfile.c ./test/th5p.c ./test/theap.c ./test/tohdr.c Changed to work with new function names. ./test/testhdf5.c Removed the data type and dataset tests since they're now in their own files. They had to be rewritten because of extensive changes to those interfaces.
* [svn-r136] ./MANIFESTRobb Matzke1997-11-145-111/+181
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./src/Makefile.in Added H5Ffamily.c and H5Fsplit.c ./src/H5B.c ./src/H5Bprivate.h ./src/H5Gnode.c Added `const' to sublass arguments. ./src/H5F.c ./src/H5Flow.c ./src/H5Fsec2.c Make sure file buffers get flushed during a call to H5Fflush(). Check for overflow in address encoding and decoding. ./src/H5Ffam.c ./src/H5Fprivate.c ./test/istore.c Implementation of file families so 32-bit machines can access 64-bit files. ./src/H5Oprivate.h Removed H5O_NO_ADDR constant. ./config/freebsd2.2.1 ./config/linux Added -DH5G_DEBUG and -DH5F_DEBUG to the list of debugging flags. ./html/H5.format.html Changed some <offset>-sized things to <length>-sized things. ./src/H5AC.c ./src/H5ACprivate.h ./src/H5B.c ./src/H5Bprivate.h ./src/H5C.c ./src/H5D.c ./src/H5F.c ./src/H5Fcore.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5Gshad.c ./src/H5Gstab.c ./src/H5H.c ./src/H5Hprivate.h ./src/H5MF.c ./src/H5MFprivate.h ./src/H5O.c ./src/H5Ocont.c ./src/H5Oistore.c ./src/H5Oprivate.h ./src/H5Ostab.c ./src/H5Ostdst.c ./src/H5pivate.h ./src/debug.c ./test/istore.c ./test/theap.c ./test/tohdr.c ./test/tstab.c Lots of changes caused by generalizing addresses. The haddr_t is now a struct, so you can no longer perform arithmetic on it. But since it's small, simple, and often used, storage is allocated like with an integer. But we always pass them around by reference. That is, when using an address in another struct, allocate space: struct my_struct { char *name; haddr_t address; } x; But when passing it to a function, pass by reference: H5F_addr_print (stderr, &(x.address)); Addresses should be initialized with H5F_addr_undef (&(x.address)); Functions for operating on addresses are in H5Flow.c and begin with H5F_addr_... Functions never return haddr_t or haddr_t*; they always pass them through arguments instead. A function that returns an address through an argument does so with its last argument and it is marked with `/*out*/'. Calls to such functions also mark output-only arguments with `/*out*/' ./src/H5Fsplit.c (new) A two-member family where all meta data goes in the first member and all raw data goes in the second member. ./src/H5B.c ./src/H5D.c ./src/H5F.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fstdio.c ./src/H5Gnode.c ./src/H5H.c ./src/H5MF.c ./src/H5MFprivate.h ./src/H5O.c Differentiate between meta data storage and raw data storage. Provide a mechanism so that the file driver can extend the file to allocate more memory. ./src/H5E.c ./src/H5Epublic.c Added the error H5E_TRUNCATED to be reported when the file is shorter than the length recorded in the boot block. ./src/H5F.c Added H5F_locate_signature() so we only do it in one place now. ./INSTALL ./INSTALL_MAINT Just a couple clarifications. ./html/ExternalFiles.html ./html/storage.html Documents how external files work. ./test/hyperslab.c ./test/istore.c Fixed printf's on 64-bit machines. ./test/istore.c Added ifdef's to test the split file driver.
* [svn-r135] ./config/linuxRobb Matzke1997-11-072-1/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./config/freebsd2.2.1 Rewritten to be more flexible. ./src/H5AC.c ./src/H5ACprivate.h ./src/H5F.c ./src/H5H.c ./src/H5Gpkg.h ./src/H5Gshad.c ./src/H5O.c ./test/istore.c ./test/tstab.c Accumulates cache statistics and displays the results on stderr when the file is closed if it was opened with H5F_ACC_DEBUG passed into H5F_open() ./src/H5B.c ./src/H5Bprivate.h ./src/H5Fistore.c ./src/H5Gnode.c Added more debugging which is turned on if H5B_DEBUG is defined on the compile command (see config/linux). Fixed a couple of bugs with left insertions which are used by the indexed storage stuff. ./src/H5Flow.c Fixed a memory leak. ./src/H5Fprivate.h Fixed warnings about shifting more than size of object. ./src/H5Fstdio.c Fixed seek optimizations back to the way Quincey originally had them. ./src/H5V.c Removed unused variables.
* [svn-r133] ./MANIFESTRobb Matzke1997-10-221-34/+194
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./src/Makefile.in Added new files. ./html/H5.apiv2.html Added documentation for group stuff. ./src/H5private.h ./src/H5E.c ./src/H5Epublic.h ./src/H5F.c ./src/H5Flow.c NEW ./src/H5Fprivate.h ./src/H5Fsec2.c NEW ./src/H5Fstdio.c NEW Low-level file driver is selected at runtime. ./src/H5Fprivate.h Got rid of `shift >= sizeof operand' warnings on big endian machines. ./src/H5Fistore.c ./test/istore.c Still working on indexed storage... ./src/H5H.c ./src/H5Hprivate.h Removed alignment constraints.
* [svn-r131] Tests hyperslabs.Robb Matzke1997-10-201-0/+1192
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* [svn-r129] Changes since 19970916Robb Matzke1997-10-203-11/+462
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/depend.in Fixed backslashes in sed script because the H5Gnode.c dependency info was disappearing. You'll have to rerun config.status to rebuild the Makefiles unless you use gnu make. ./config/conclude.in Also removes emacs backup files, TAGS, and svf backup files. ./config/linux Grouped gcc flags and added provisions for debugging vs. production. ./html/H5.format.html Updated messages 0x0008, 0x0009, and 0x000A. ./html/storage.html Documentation describing storage schemes. ./src/Makefile.in ./test/Makefile.in New source files. ./src/H5A.c ./src/H5Apublic.h ./src/H5C.c Changed VOIDP to void* in a couple places. ./src/H5AC.c ./src/H5ACprivate.h ./src/H5B.c ./src/H5Bprivate.h ./src/H5G.c ./src/H5Gnode.c ./src/H5Gprivate.h ./src/H5H.c ./src/H5O.c Removed `const' from some variables because H5G_node_found() wanted to modify it's udata argument. Removing const there caused it to cascade to these other locations. ./src/H5AC.c ./src/H5ACprivate.h ./src/H5B.c ./src/H5Gnode.c ./src/H5Gstab.c ./src/H5H.c ./src/H5O.c Added an extra argument to H5AC_find_f() and H5AC_protect(). This arg gets passed to the load() method. Also added an extra argument to the H5AC_find() macro. ./src/H5B.c ./src/H5Bprivate.h ./src/H5Gnode.c Extra argument passed to the sizeof_rkey() method. ./src/H5Fprivate.c ./src/H5Fistore.c (new) Added indexed I/O operations. ./src/H5G.c ./src/H5Gnode.c ./src/H5Gprivate.h Beginning to add H5G_open/close and related bug fixes. ./src/H5Oprivate.h ./src/H5Oistore.c (new) Added the H5O_ISTORE messsage (0x0008) for indexed storage of objects. ./src/H5private.h Added extra braces around both sides of the FUNC_ENTER() and FUNC_LEAVE() macros so FUNC_ENTER() can appear before declarations or after executable statements the second case is used by H5G_namei() to initialize output arguments to sane values before FUNC_ENTER() might return failure. int f () { int decl1; printf ("This happens before FUNC_ENTER()\n"); FUNC_ENTER (...); int another_declaration; ./src/H5B.c ./src/H5Bprivate.h ./src/H5Gnode.c Extra arguments for key encoding and decoding. ./src/H5E.c ./src/H5Epublic.h ./src/H5Fistore.c ./src/H5Oistore.c ./src/H5Oprivate.h Indexed, chunked, sparse storage (not ready for general consumption yet). ./src/H5V.c (new) ./src/H5Vprivate.h (new) ./test/hyperslab.c (new) Vector, array, and hyperslab functions. ./src/H5B.c ./src/H5Bprivate.h ./src/H5Fistore.c ./src/H5Gnode.c ./src/H5V.c ./src/H5Vprivate.h ./test/hyperslab.c Added functionality for indexed storage. ./src/H5F.c Fixed problems with seek optimizing. Recommend we disable it until we can implement it in the file/address class since all of HDF5 must be aware of it. ./src/H5O.c Fixed comeent speling erorr :-) ./MANIFEST Added new files. ./config/conclude.in Added the word `Testing' to the test cases. So if a test program is called hyperslab then the make output will contain the line `Testing hyperslab'. ./config/linux The default file I/O library is Posix section 2 on my linux machine so I can do some I/O performance testing. ./src/H5C.c ./src/H5Cprivate.h ./src/H5Cpublic.h Added ability to set size of indexed-storage B-tree. ./src/H5D.c ./src/H5E.c ./src/H5Epublic.h ./src/H5F.c ./src/H5Fprivate.h ./src/H5G.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5Gpublic.h ./src/H5Gshad.c ./src/H5Gstab.c ./test/stab.c Changed `directory' to `group' in numerous places. ./src/H5private.h The FILELIB constant can be set on the compile command-line. ./src/istore.c NEW Tests for indexed storage.
* [svn-r126] Changed name of "entire dataset" paramter from H5P_SCALAR to ↵Quincey Koziol1997-10-171-3/+3
| | | | | | H5P_ALL for H5Dread/H5Dwrite
* [svn-r123] Added tests for H5Pget_lrank and H5Pget_ldimsQuincey Koziol1997-10-151-1/+19
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* [svn-r115] Corrected usage of H5Tsize function.Quincey Koziol1997-10-082-3/+3
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* [svn-r111] Changed hdf5_file_t to H5F_t, split data struct ito two halves, fixedRobb Matzke1997-09-244-11/+9
| | | | problems when opening the same file more than once.
* [svn-r109] Initialized test datasets better and cleaned up a few typos.Quincey Koziol1997-09-241-12/+23
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* [svn-r108] Changed all hatom_t types to hid_t. (Isn't 'sed' nifty.. :-)Quincey Koziol1997-09-247-26/+26
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* [svn-r107] Changed tests for new symbol table stuffRobb Matzke1997-09-222-78/+77
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* [svn-r100] Interim checkin for purify. Also contains H5G shadow stuff, changesRobb Matzke1997-09-194-13/+15
| | | | | | to int64 encode/decode to fix purify on 32-bit systems, changes to H5O_modify, changes to H5D.c to use H5F_open/close(), etc. Documentation will be mailed shortly...
* [svn-r97] Free'd temporary buffer.Quincey Koziol1997-09-181-0/+1
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* [svn-r90] ./test/th5d.cRobb Matzke1997-09-162-1/+7
| | | | | | | | Changed the H5Mfind_name() return value and removed the call to H5Maccess(). ./test/th5p.c Removed unused variables.
* [svn-r88] Fixed an error check.Robb Matzke1997-09-151-1/+1
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* [svn-r84] Arg sizes fixes in tfile.cRobb Matzke1997-09-153-13/+17
| | | | Name change in th5d.c
* [svn-r79] Finishing adding dataset reading code, which is working nicely. ↵Quincey Koziol1997-09-151-6/+131
| | | | | | Test for second dataset I/O is currently commented out, pending a fix.
* [svn-r77] Fixed mis-sized parameter passed to H5Cgetparm for offsets and ↵Quincey Koziol1997-09-151-8/+8
| | | | | | lengths. This affected primarily big-endian architecture.
* [svn-r76] Added dataset testing code to CVS repository. (Forgotten in the ↵Quincey Koziol1997-09-121-0/+123
| | | | | | hubbub earlier today)
* [svn-r74] Added rudimentary dataset testing code. More coming later today...Quincey Koziol1997-09-123-1/+3
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* [svn-r72] *** empty log message ***Robb Matzke1997-09-102-27/+28
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* [svn-r69] Added basic H5P test code, which seems to be working correctly.Quincey Koziol1997-09-044-3/+119
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* [svn-r65] Removed Makefile from distribution, started added dataspace test ↵Quincey Koziol1997-09-022-211/+3
| | | | routines.
* [svn-r63] *** empty log message ***Robb Matzke1997-09-021-0/+1
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* [svn-r59] Added [basic] testing for H5T interface, which appears to be ↵Quincey Koziol1997-08-295-4/+132
| | | | working well.
* [svn-r56] ./test/tohdr.cRobb Matzke1997-08-292-4/+5
| | | | | | | | Testing H5O_remove() and H5O_load(). ./test/tstab.c Uncommented call to H5O_read() since H5O_remove() is implemented now.
* [svn-r54] *** empty log message ***Quincey Koziol1997-08-291-4/+73
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* [svn-r51] ./test/tstab.cRobb Matzke1997-08-297-46/+248
| | | | | | | | | | | | | | | | | | | | ./test/tohdr.c ./test/tmeta.c ./test/theap.c ./test/tfile.c ./test/testhdf5.h ./test/testhdf5.c Changed the MESSAGE macro so it doesn't have a semicolon inside the argument list and automatic indentation tools work better. Old call: MESSAGE (5, printfunc("foo%s %d", s, i);); New call: MESSAGE (5, ("foo%s %d", s, i)); The parentheses are required. ./test/tstab.c Added more tests.
* [svn-r48] Fixed H5Cgetparm tests to use uint8 for the offset and length ↵Quincey Koziol1997-08-282-75/+143
| | | | parameters.
* [svn-r45] ./test/tstab.cRobb Matzke1997-08-281-4/+0
| | | | No longer calls H5G_mkroot().
* [svn-r37] *** empty log message ***Robb Matzke1997-08-151-0/+26
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* [svn-r36] ./test/testhdf5.cRobb Matzke1997-08-157-43/+50
| | | | | | | | | | | | | | | ./test/testhdf5.h ./test/tfile.c ./test/theap.c ./test/tmeta.c ./test/tohdr.c ./test/tstab.c Fixed include files. ./test/Makefile.in NEW ./test/Makefile Removed Makefile; it is now generated from Makefile.in by configure.
* [svn-r28] ./test/tfile.cRobb Matzke1997-08-132-23/+54
| | | | | | | | Removed tests for H5_BTREEPAGE_SIZE and added tests for H5_SYM_LEAF_K and H5_SYM_INTERN_K. ./test/tstab.c Removed call to H5O_link() since it's handled by H5G_insert().
* [svn-r26] ./test/tfile.hRobb Matzke1997-08-122-14/+28
| | | | | | | | Removed unused local variables. ./test/tstab.c Now uses directory-aware functions which in turn call the unaware functions.
* [svn-r18] ./src/hdf5plat.hRobb Matzke1997-08-094-12/+94
| | | | | | | | | | | | | | | Added defn for int64 and uint64 on irix. It seems to be wrong, but at least things compile and run. This file will go away with autoconf anyway. ./test/testhdf5.c ./test/Makefile Added tstab.c ./test/testhdf5.h Added tstab.c Fixed bugs with CHECK_I() and CHECK_PTR().
* [svn-r16] ./src/test/MakefileRobb Matzke1997-08-075-4/+179
| | | | | | | | | | | Added new files ./test/testhdf5.c ./test/testhdf5.h Added calls for object header testing. ./test/theap.c Turned off some output.
* [svn-r2] Oops...Quincey Koziol1997-07-306-0/+962
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