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* Squash merge of file locking fixesDana Robinson2020-08-033-64/+185
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* Minor normalizations with hdf5_1_10Dana Robinson2020-07-319-414/+331
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* Fixed additional typos in tselect.c comments.Dana Robinson2020-07-281-2/+2
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* Fixes typo in tselect.cDana Robinson2020-07-281-1/+1
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* Updates H5Sset_extent_none() to set H5S_NULLDana Robinson2020-07-281-2/+78
| | | | | | | | The API call used to set the internal H5S_NO_CLASS value which produced errors when such a dataspace was passed to many other API calls. Fixes HDFFV-11027
* Merge pull request #2693 in HDFFV/hdf5 from ↵Vailin Choi2020-07-175-1/+181
|\ | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-11080-heap-use-after-free-by-the-call to develop * commit '3023b34272cc6ada84aebfa7441a6a55afa3621c': Update MANIFEST. Add new test to Cmake. Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
| * Update MANIFEST.vchoi2020-07-161-0/+1
| | | | | | | | Add new test to Cmake.
| * Fix for jira issue HDFFV-11080:vchoi2020-07-144-1/+180
| | | | | | | | | | (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
* | H5R: fix type conversion of references within vlen typeJerome Soumagne2020-07-161-0/+270
|/ | | | Update trefer.c with vlen test case
* Add new source files to CMake buildQuincey Koziol2020-06-281-0/+1
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* Clean up warningsQuincey Koziol2020-06-281-21/+20
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* Merge remote-tracking branch 'origin/develop' into monotonic_timerQuincey Koziol2020-06-273-54/+134
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| * * Fix intermittent error with Splitter VFD.Jacob Smith2020-06-253-54/+134
| | | | | | | | | | | | | | | | Mismatch in time of test file creation was creating false negatives. Add file-duplication routine: `h5_duplicate_file_by_bytes()`. * Change library calls in `h5test.c:h5_compare_file_bytes()` to their HD-prefixed equivalents.
* | Merge remote-tracking branch 'origin/develop' into monotonic_timerQuincey Koziol2020-06-26226-49539/+88368
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| * Merge pull request #2615 in HDFFV/hdf5 from ↵Jake Smith2020-06-151-1/+2
| |\ | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:bugfix/splitter_valgrind_patch to develop * commit '6462c67b6578e48c1ef6d847be59c0b5e3598a50': Patch a few holes in the Splitter VFD implementation.
| | * Patch a few holes in the Splitter VFD implementation.Jacob Smith2020-05-291-1/+2
| | | | | | | | | | | | | | | * Missing logfile close on driver-open failure. * Initialize empty string in test/vfd (logfile path in W/O compat check).
| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Larry Knox2020-06-071-7/+7
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit 'aa338c3a87a4544ccb164832422e3e2462a57b88': Detect when there's the same-shaped selection of a single block of elements on both selections, but with different selection types (i.e. one selection defined as an 'all' type and the other as a hyperslab or point type), without falling into the generic selection iteration case. Normalization of H5T.c with 1.10. Normalization of H5D.c with 1.10.
| | * | Detect when there's the same-shaped selection of a single block of elements onQuincey Koziol2020-06-051-7/+7
| | | | | | | | | | | | | | | | | | | | | | | | both selections, but with different selection types (i.e. one selection defined as an 'all' type and the other as a hyperslab or point type), without falling into the generic selection iteration case.
| * | | Add flags from config/clang-warnings/*general files to H5 C and CXX flags ↵Larry Knox2020-06-061-3/+3
| |/ / | | | | | | | | | | | | | | | | | | for all versions of Clang and Clang++ compilers. Switched from cut to awk in testcheck_version.sh.in to avoid dependence on tab vs. " " in version definitions in H5public.h.
| * | Normalizations with 1.10 branch.Dana Robinson2020-06-021-4/+4
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| * Minor tweaks to testhdf5 code after normalization with 1.10.Dana Robinson2020-05-282-45/+45
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| * Misc warning fixes.Dana Robinson2020-05-104-18/+39
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| * Align contents of CMake and autotools testfile cleanup lists.Quincey Koziol2020-05-032-90/+49
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| * Avoid allocating a chunk index for datasets with 0-sized dimensions, untilQuincey Koziol2020-05-012-20/+214
| | | | | | | | the dataset is extended.
| * Merge pull request #2541 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-04-271-0/+59
| |\ | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit 'c03ee563f46013d22f36a1895664a9ba876558e9': Further updates to the tools warnings fixes from code review. Updates to tools warning PR from code review. Fixes for warnings in the tools code.
| | * Updates to tools warning PR from code review.Dana Robinson2020-04-261-4/+4
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| | * Fixes for warnings in the tools code.Dana Robinson2020-04-251-0/+59
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| * | For compatibility with non-C99 Visual Studio versions, use "%" PRIuMAXDavid Young2020-04-241-2/+2
| | | | | | | | | | | | instead of "%ju".
| * | Fix `test/swmr_sparse_reader.c:118:77: error: cast from pointerDavid Young2020-04-241-2/+2
| |/ | | | | | | | | | | | | to integer of different size [-Werror=pointer-to-int-cast]` and `test/snapshots-hdf5/current/test/swmr_sparse_reader.c:129:100: error: cast from pointer to integer of different size [-Werror=pointer-to-int-cast]`.
| * Trim trailing whitespaceQuincey Koziol2020-04-2067-517/+517
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| * Merge branch 'develop' of ↵Jacob Smith2020-04-074-352/+1096
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into feature/vfd_splitter_mirror_a
| | * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-04-071-0/+553
| | |\ | | | | | | | | | | | | | | | | | | | | | | | | * commit 'f6514c35ea3786206a8db73e1cad8fce8fe6a715': Updated test ddl files so CMake passes after h5dump failures. Modifications based on PR review feedback. Add two routines gen_ref_files() and gen_sel_files() to generate test files related to references and selections. These test files will be copied to 1.12, 1.10 and 1.8 for compatibility testing.
| | | * Merge pull request #2472 in HDFFV/hdf5 from ↵Vailin Choi2020-04-061-0/+553
| | | |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/bounds_compat to develop * commit '3f081c99376ad562dcb6bbf7d6c11216f682aca7': Modifications based on PR review feedback. Add two routines gen_ref_files() and gen_sel_files() to generate test files related to references and selections. These test files will be copied to 1.12, 1.10 and 1.8 for compatibility testing.
| | | | * Modifications based on PR review feedback.vchoi2020-04-011-71/+51
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| | | | * Add two routines gen_ref_files() and gen_sel_files() to generate test files ↵vchoi2020-03-261-0/+573
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | related to references and selections. These test files will be copied to 1.12, 1.10 and 1.8 for compatibility testing.
| | * | | Minor updates and fix settings for fortran flagsAllen Byrne2020-04-061-1/+0
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| | * | | TRILAB-192 add c++ and fortran warnings build systems one fileAllen Byrne2020-04-051-3/+15
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| | * | Merge pull request #2461 in HDFFV/hdf5 from ↵Vailin Choi2020-04-021-348/+388
| | |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/dtype_close_on_error to develop * commit 'afdcac28b85d690eebc80ab568fa5266081baaaa': A fix in the cleaning up code for datatype when datatype initialization via H5D__init_type() fails. This is triggered by the tests for revised references when the libver bounds setting does not allow version 4 datatype message to be created. The test failure is abort core dumped. This is due to the datatype initialization fails before the datatype ID is registered. The datatype cleanup code should provide for the above situation. The code to fix the problem is the same as what is done in H5D__open_oid().
| | | * | A fix in the cleaning up code for datatype when datatype initialization via ↵vchoi2020-03-231-348/+388
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | H5D__init_type() fails. This is triggered by the tests for revised references when the libver bounds setting does not allow version 4 datatype message to be created. The test failure is abort core dumped. This is due to the datatype initialization fails before the datatype ID is registered. The datatype cleanup code should provide for the above situation. The code to fix the problem is the same as what is done in H5D__open_oid().
| | * | | Refactor to reduce verbosity.Quincey Koziol2020-03-261-55/+33
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| | * | Correct macro checkQuincey Koziol2020-03-251-1/+1
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| | * | Correct failure when allocation tracking are disabled.Quincey Koziol2020-03-241-0/+12
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| | * | Revise API for H5get_alloc_stats() to take a struct instead of separate values.Quincey Koziol2020-03-201-38/+30
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| | * | Merge remote-tracking branch 'origin/develop' into alloc_statsQuincey Koziol2020-03-201-1/+20
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| | | * Fix threadsafe for new testAllen Byrne2020-03-181-1/+20
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| | * | Add routines to query the library's free list sizes and allocation stats.Quincey Koziol2020-03-101-0/+139
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| * | Tidying of Mirror VFD.Jacob Smith2020-04-073-30/+51
| | | | | | | | | | | | | | | | | | | | | * Rename server-stop utility to mirror_server_stop. * Remove external dependency on bzero(). * Modify test/use_common to use only the public API. * Rename internal bitswap macro to follow convention.
| * | Add Splitter VFD to library.Jacob Smith2020-03-1313-557/+5011
| |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | * "Simultaneous and equivalent" Read-Write and Write-Only channels for file I/O. * Only supports drivers with the H5FD_FEAT_DEFAULT_VFD_COMPATIBLE flag for now, preventing issues with multi-file drivers. Add Mirror VFD to library. * Write-only operations over a network. * Uses TCP/IP sockets. * Server and auxiliary server-shutdown programs provided in a new directory, `utils/mirror_vfd`. * Automated testing via loopback ("remote" of localhost).
| * So that I can use PASSED(); anywhere a statement can go, #define PASSED() withDavid Young2020-02-2814-248/+247
| | | | | | | | a do-while wrapper.
| * Complete the comment on thread_main(), explaining why the barrier is used.David Young2020-02-271-1/+9
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