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* [svn-r13067] Description:Quincey Koziol2006-12-181-0/+229
| | | | | | | | | | | | | | Add [quite] limited ability to update (ie. write) data for objects in fractal heap. Limited to just updating objects in managed heap blocks (i.e. not 'tiny' or 'huge' objects) and must be updated with data of the same length as the object in the heap. Updating objects in compressed heaps does work though [as long as the data isn't 'tiny' or 'huge']. Needed for changing the data value or the name of an attribute that is stored in dense or shared storage. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13065] Added support for copying shared messages (including turning ↵James Laird2006-12-151-183/+222
| | | | | | | | | | | | unshared messages to shared messages and vice versa). Extended objcopy test to test all "permutations" of shared/unshared and new/old group format. If this proves to take a long time to test, I'll go back and have it run fewer tests when HDF5_TEST_EXPRESS is enabled. Tested on smirom, kagiso, copper, and Windows.
* [svn-r13062] Albert Cheng2006-12-141-6/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: Test failed when core and multi VFD is used. SOlution: Failure was because the test file was created with the specified VFD access property but later reopened by default access. That won't work for VFDs such as multi that produced files that are incompatible with the default sec2 file driver. Fixed it by using the same VFD access property when it reopens the same test file. However, it still fails for the core VFD which does not create any real file. It is meaningless to try to reopen its file. Fixed it by adding core to the incompatible list of VFDs so that it would skip the test. Split is already coded as incompatible VFD but I don't understand why it is incompatible in this case. Removed it from the incompatible list. Tested Platforms: Copper in which the daily test failed.
* [svn-r13048] Description:Quincey Koziol2006-12-121-8/+45
| | | | | | | | | | | | Set up tests for next phase of testing dense attribute operations, with shared attributes. Other minor code cleanups... Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13047] Description:Quincey Koziol2006-12-121-1/+5
| | | | | | | | | | | | | | Add "attribute exists" internal routine to make verifying that an attribute with the same name doesn't already exist easier. Tweak "trace" script to produce more whitespace in H5TRACE macros, in order to make them easier to read. Minor other whitespace cleanups Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13045] Description:Quincey Koziol2006-12-122-99/+201
| | | | | | | | | | | | | | Switch from using H5L_index_t/H5L_INDEX_<foo> to H5_index_t/H5_INDEX_<foo> in order to accommodate indices on aspects of attributes as well as links. Add basic support for deleting attributes in dense storage (needs more support/tests for shared attributes in dense storage still). Misc. cleanups, etc. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13041] Description:Quincey Koziol2006-12-111-6/+128
| | | | | | | | | | | Migrate "internalish" attribute operations into new source code file. Add test & basic support for opening attributes in dense storage (shared attributes not tested or supported yet). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13034] Description:Quincey Koziol2006-12-082-4/+3
| | | | | | | | Take out separate memory type in the file for SOHM objects and create aliases for existing memory types for SOHM use. Tested on: FreeBSD/32 4.11 (sleipnir)
* [svn-r13028] Description:Quincey Koziol2006-12-062-5/+135
| | | | | | | | | | | | | | | | | Add first pass of "dense" attribute storage to objects. Lots of parts of this are stubbed out, but all the tests are passing and I'll work on the corner cases soon. Eliminated several unused parameters from object header message callback routines. Other, miscellaneous code cleanups, etc. (and probably some things I've forgotten about... :-) Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r13016] Description:Quincey Koziol2006-12-041-2/+2
| | | | | | | | | | | Finish moving object header message routines into their own source code module, along with renaming them to have "H5O_msg_" prefix... Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r13015] Description:Quincey Koziol2006-12-042-18/+18
| | | | | | | | | | | Migrate more object header routines to use the H5O_msg_ prefix and put them into the src/H5Omessage.c code module. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r13013] Cleaned up some mismatched types in test/tsohm.c that were causingJames Laird2006-12-031-4/+4
| | | | | | errors on tg-login3. Tested on tg-login3.
* [svn-r13012] Description:Quincey Koziol2006-12-032-35/+29
| | | | | | | | | | | | | | Refactor object header code to separate process of creating an object header message from the process of writing to an existing one. Start renaming operations that deal with object header messages to have "H5O_msg_" prefix... Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r13004] Much improved shared object header message test, along with ↵James Laird2006-12-012-27/+2217
| | | | | | | | | | | some bug fixes to make the test pass. These changes involve changes to the file format of SOHMs, but that's okay because nobody should have been using SOHMs yet anyway. Tested on Windows, kagiso, copper, and heping
* [svn-r13002] Description:Quincey Koziol2006-11-301-0/+95
| | | | | | | | | | | | Fix problem with copying objects when the dataset to copy has an "older" version of the layout message and needs to compute the size of the dataset's storage after the dataspace information is available. Minor random cleanups also... Tested on: FreeBSD/32 4.11 (sleipnir) Too minor/weird to test w/h5committest...
* [svn-r13001] Enabled CORE file driver to read or write an existing file ↵Raymond Lu2006-11-301-0/+135
| | | | | | | depending the setting of backing store through H5Pset_core_fapl and file open flag. Added test cases in vfd.c.
* [svn-r12995] Description:Quincey Koziol2006-11-291-0/+30
| | | | | | | | | | | | Make the memory size of the max. compact & min. dense attribute storage variables align with the property list size, instead of the size on disk, to better handle big-endian machines. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12994] Description:Quincey Koziol2006-11-292-3/+167
| | | | | | | | | | | | | | | Propagate object creation properties up into group, dataset and named datatype property lists, when those property lists are retrieved for existing objects in a file. Also, add H5Tget_create_plist() API routine, to allow named datatype property lists to be retrieved for named datatypes. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12992] Description:Quincey Koziol2006-11-281-5/+5
| | | | | | | | | | | | | | | | | | Add fields for tracking attributes on objects to object header prefix, when using the latest version of the format. Reduce size used to store type of header message from 2 bytes to 1. (If we have >256 message types, we probably have a different problem... :-) Also, add "birth" time for object (i.e. creation time) [named to align with similar fields in file systems] Correct bug in H5Gget_objinfo() - retrieve the ctime field from object info, instead of the mtime field. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12991] Description:Quincey Koziol2006-11-281-4/+4
| | | | | | | | | Reduce the size of some of the group information to more reasonable bounds. (16-bit values instead of 32-bit values). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12990] Description:Quincey Koziol2006-11-281-4/+4
| | | | | | | | | | | When using the latest version of the file format, move the "modification time" information into the object header prefix, which is more efficient. Also add "access time" and "change time" (for metadata) fields, all of which take about the same space as the previous modification time header message. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12989] Description:Quincey Koziol2006-11-281-0/+171
| | | | | | | | Remove incorrect sanity check & add test case that triggered it. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12988] Description:Quincey Koziol2006-11-271-1/+1
| | | | | | | | | General cleanups, in preparation for adding some attribute-tracking fields to the object header prefix. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12983] Description:Quincey Koziol2006-11-271-48/+30
| | | | | | | | | Merge H5Pget/set_create_tracking / H5Pget/set_create_index routines into H5Pget/set_creation_order. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12977] Description:Quincey Koziol2006-11-271-1/+521
| | | | | | | | Added H5Gget_info[_by_idx] routines and deprecated H5Gget_num_objs routine. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12976] Description:Quincey Koziol2006-11-271-5/+61
| | | | | | | | | | | Add # of attributes to the object info struct and deprecate H5Aget_num_attrs(). Tested on: FreeBSd/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12974] Description:Quincey Koziol2006-11-271-9/+423
| | | | | | | | | | | Add H5Oget_info() and H5Oget_info_by_idx() API routines & tests Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) Mac OS X/32 10.4.8 (amazon) AIX/32 5.? (copper)
* [svn-r12973] Description:Quincey Koziol2006-11-251-2/+2
| | | | | | | | | | | | | | | Finish removing library's internal code that uses H5G_get_objinfo() and retarget it at either getting the link information or the object information, as appropriate. (Still need to add user-level tests for H5Oget_info(), but since several internal components of the library depend on the internal version, it appears to be working correctly). Tested on: FreeBSD/32 4.11 (sleipnir) Linux/322.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper) Mac OS X/32 10.4.8 (amazon)
* [svn-r12965] Removed the warning message of extend_file not having protocol ↵Albert Cheng2006-11-211-1/+2
| | | | | | | | by making it static. Test: Heping.
* [svn-r12956] Description:Quincey Koziol2006-11-211-2/+515
| | | | | | | | | Add tests for H5Oopen_by_idx() (in a rare fit of superlative coding I apparently got the implementation complete correct in my earlier checkin :-) Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12952] Description:Quincey Koziol2006-11-201-177/+697
| | | | | | | | | | Add tests for H5Literate(), in all combinations. Sweep up a few minor issues with H5Literate() that the tests exposed. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12951] Fixed error on copper in 64-bit. Was using size_t when I ↵James Laird2006-11-201-3/+3
| | | | | | | | | should have been using unsigned. Tested on copper; minor change. Currently testing on juniper.
* [svn-r12949] Description:Quincey Koziol2006-11-202-13/+347
| | | | | | | | | | | | | | | | Finish implementation of H5Literate() [still needs real tests] Clean up datatype macro warnings a bit more. Unify iterator callback macros and put up in public header file, with the iterator directions. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12942] Description:Quincey Koziol2006-11-185-570/+513
| | | | | | | | | | | Fix H5Rget_name() routine with dataset region references and merge tests into getname test. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12941] Description:Quincey Koziol2006-11-171-1/+1
| | | | | | | | | | Clean up warnings assigned to me from today's meeting - still need to tackle the datatype conversion ones... Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir)
* [svn-r12938] Description:Quincey Koziol2006-11-171-2/+2
| | | | | | | | | | | | | | | | | Add src/H5Oalloc.c file forgotten in previous object header checkin Break out more object header routines into separate file (debugging routines this time). Fix "//" style comment in recent ISOHM source changes. Fix 'size_t' vs. 'unsigned' problem (visible in 64-bit testing) in recent ISOHM test changes. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir)
* [svn-r12935] Added list-to-btree conversion, changed SOHM apis, and pushed ↵James Laird2006-11-173-81/+66
| | | | | | | | | | | SOHM table version and size information into the superblock to eliminate a read when loading it. This is a file format change, and hopefully the last one (knock on wood). Tested on kagiso and Windows (mostly just a SOHM change).
* [svn-r12934] Description:Elena Pourmal2006-11-171-7/+20
| | | | | | | Added return value to the main function to fix daily tests problem on sol that I cannot reproduce. Platforms tested: sol, heping
* [svn-r12932] Description:Quincey Koziol2006-11-172-11/+11
| | | | | | | | | | | | Basic support for H5Literate() routine. Still needs to be fleshed out and refactored to simplify. Also, needs tests. :-) Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper) Mac OS X/32 10.4.8 (amazon)
* [svn-r12930] Description:Elena Pourmal2006-11-163-11/+192
| | | | | | | | Added new refreg_name.c file to test H5Rget_name and H5Iget_name for region references. H5Rget_name tests are skipped for now since they do not work (at least for me :-) Platforms tested: heping and copper
* [svn-r12929] Hopefully this really is a fix for the tg-login errors.James Laird2006-11-161-3/+1
| | | | | | | | | | | The version of libtool used by HDF5 isn't directly affected by the reconfigure script; instead, libtoolize --force must be used by hand. Libtool was the source of the problem, so rolling its version back to 1.5.14 should solve the issue (at least temporarily). Reconfigure should still work on both heping and kagiso. Tested on heping, kagiso, and tg-login3.
* [svn-r12922] Description:Quincey Koziol2006-11-161-5/+238
| | | | | | | | | | | Add support for "delete by index" to "old-style" groups, finishing implmentation of H5Ldelete_by_idx() routine. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) Aix/32 5.? (copper)
* [svn-r12921] Description:Quincey Koziol2006-11-161-144/+264
| | | | | | | | Finish adding more tests to "delete by index" for compact/dense groups. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir)
* [svn-r12919] Description:Quincey Koziol2006-11-151-4/+0
| | | | | | | | | More progress toward getting H5Ldelete_by_idx() working - removals on densely stored links should work now (still needs some more tests). Still need to write code for removals on "old-style" groups. Tested on: FreeBSD/32 4.11 (sleipnir)
* [svn-r12915] Description:Quincey Koziol2006-11-151-110/+179
| | | | | | | | | | Finish adding "delete by index" feature to v2 B-trees. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12914] Description:Quincey Koziol2006-11-141-9/+178
| | | | | | | | Checkpoint partially working v2 B-tree delete by index code (ifdef'ed out) for further work. Tested on: Linux/32 2.6 (chicago)
* [svn-r12911] Backed up to previous versions of automake and libtool. ↵James Laird2006-11-141-1/+3
| | | | | | | | Hopefully this will fix issues on tg-login3. bin/reconfigure should still work on both heping/mir and kagiso.
* [svn-r12910] Description:Quincey Koziol2006-11-141-0/+213
| | | | | | | | | | | More progress toward getting H5Ldelete_by_idx to work fully - can now delete by index in compact group (but not dense groups or "old-style" groups yet). Need to go write a v2 B-tree routine to delete from the B-tree by index before the dense storage will work properly... Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12906] Description:Quincey Koziol2006-11-131-10/+10
| | | | | | | | | | | | | | | | Straighten out some convoluted code when links were being deleted, which could cause the "delete" callback for user-defined links to not get called when the group they were in was deleted. Had to compromise on the "delete" callback though - only calls the callback with the ID for the file the link is in, instead of the group, since the group is being held open upstream in the calling sequence during a group deletion and this prevents a group and its ID from being created. (This could possibly be worked around, but would cause a fair bit of havoc in the code and I'm not entirely certain it's worth it...) Tested on: Linux/32 2.6 (chicago)
* [svn-r12905] Added test/tsohm.c, which was missed in the previous checkin. ↵James Laird2006-11-131-0/+296
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