summaryrefslogtreecommitdiffstats
path: root/test
Commit message (Collapse)AuthorAgeFilesLines
* [svn-r303] Changes since 19980228Robb Matzke1998-03-048-703/+1294
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./html/Dataspaces.html ./html/Errors.html ./html/Files.html ./html/H5.api.html ./html/review1.html ./src/H5private.h ./src/H5public.h ./test/dsets.c ./test/dtypes.c Removed all the types like `int32' and `intn' into private headers since they violate the naming scheme and pollute application name space. Besides, our test files only use them in a handful of places and it's probably useless to export them to the app. The app is always written in terms of standard numeric types or its own numeric types and probably never in terms of HDF5 numeric types. If it were, then the user would have to copy from their type to hdf5 type for almost every hdf5 API function call! Same goes for return values. I also removed SUCCEED/FAIL from the API since apps should be checking against zero anyway. if (FAIL==(space=H5Screate_simple(...))) /*wrong*/ if ((space=H5Fcreate_simple(...)<0)) /*right*/ ./src/H5.c Changed arguments of H5version() from `uintn' to `unsigned'. ./src/H5Tpublic.h ./src/H5T.c Changed return type of H5Tget_nmembers() from `intn' to `int' ./src/H5A.c ./src/H5Aprivate.h ./src/H5Apublic.h Changed `H5Asearch_func_t' to `H5A_search_func_t' and moved its definition from the public to the private header file. ./html/H5.format.html Documented changes made to the external file list (H5O_EFL) message. ./src/H5D.c ./src/H5Dprivate.h ./src/H5E.c ./src/H5Epublic.h ./src/H5O.c ./src/H5Oefl.c ./src/H5Oprivate.h ./src/H5P.c ./src/H5Ppublic.h Added partial support for external raw data files. HDF5 can now describe external raw data files by listing the file names, offsets, and size for a dataset. However, we will restrict a dataset to be stored "contiguously" when the external file list is viewed as a single address space. The current implementation is unable to read/write to external files--that will come later this week as will documentation. For now, take a look at ./test/external.c, particularly the calls to H5Pset_external(). ./test/Makefile.in ./test/external.c [NEW] ./MANIFEST Added tests for external storage. Note: the read test is supposed to fail at this point since reading external datasets is not implemented yet. There is no write test. ./src/H5S.c ./src/H5Sprivate.h ./src/H5Ssimp.c Added H5S_get_npoints_max() to return the maximum possible number of data points in a data space. Added an extra argument to H5S_get_dims() which returns the maximum dims. ./src/H5F.c ./src/H5Fprivate.h ./src/H5Fpublic.h ./src/H5M.c [DEPRICATED] ./src/H5Mpublic.h [DEPRICATED] Changed `template' to `property list' in lots of places. ./src/H5Osdspace.c Removed an extra `\n' from a print statement. ./src/H5S_public.h Changed H5S_UNLIMITED to the maximum size_t value. ./test/extend.c "Extendable" is spelled "extendible". ./src/H5Farray.c ./src/H5V.c ./src/H5Vprivate.h ./test/hyperslab.c Strides are now type ssize_t instead of int. These have nothing to do with the sample granularity arguments for hyperslabs, which are also called "strides" in the code. ./test/tstab.c Changed assumptions about default address and length sizes.
* [svn-r302] Changes since 19980227Robb Matzke1998-02-283-37/+79
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./html/Errors.html [NEW] ./html/H5.user.html ./MANIFEST Documents the new error handling interface and gives examples. ./src/H5.c ./src/H5private.h ./src/H5Apublic.h ./src/H5E.c ./src/H5Eprivate.h ./src/H5Epublic.h Rewrote error handling. Got rid of `push' overloading and added a few API functions. The error stack is statically allocated and not entered into H5A, simplifying error handling within the error handler. Rudimentary support for threads. Changed the names of some errors. ./src/H5G.c ./src/H5Gnode.c ./src/H5H.c ./src/H5O.c ./src/H5T.c Changed H5ECLEAR to H5E_clear(). ./src/Makefile.in Alphabetized source list. ./test/dsets.c Turned off error reporting around functions that are expected to fail. Error messages are sent to stdout. ./test/testhdf5.c ./test/testhdf5.h Turned off automatic error reporting since this file mostly calls internal functions and does its own error reporting.
* [svn-r298] Changes since 19980219Robb Matzke1998-02-251-4/+21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./html/Files.html ./src/H5C.c ./src/H5Cpublic.h ./src/H5Ffamily.c ./src/H5Fprivate.h ./src/H5Fsplit.c ./test/tstab.c Added file-access property functions. The split driver takes file extensions as properties. ./src/H5A.c ./src/H5Aprivate.h Added some comments. Changed H5A_destroy() to call the free function on all the atoms that are destroyed. This fixes a bug where the file boot block isn't updated if the file isn't closed before calling exit(). Removed extra `*' and `&' from some places. ./src/H5AC.c Replaced an occurrence of NO_ADDR with NULL. ./src/H5Odtype.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h Data types of compound members are pointers. ./H5private.h Some changes to make lseek64() work on Irix 5.3 where header files don't realize that `long long' works. ./acconfig.h ./configure.in Removed definition for PHDF5 since it looks like everyone is useing HAVE_PARALLEL now. ./configure.in ./src/H5detec.c Added checks for gethostname() and getpwuid().
* [svn-r297] Switched templates to "property lists" and changed API prefix ↵Quincey Koziol1998-02-259-109/+109
| | | | from H5C to H5P
* [svn-r296] Switched prefix for dataspaces from H5P to H5SQuincey Koziol1998-02-256-58/+58
|
* [svn-r295] ./test/tstab.cRobb Matzke1998-02-191-0/+2
| | | | Changed a zero to H5C_DEFAULT.
* [svn-r293] Commented out some test codeRobb Matzke1998-02-191-0/+2
|
* [svn-r292] *** empty log message ***Robb Matzke1998-02-191-1/+1
|
* [svn-r291] Changes since 19980206Robb Matzke1998-02-197-19/+27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in ./src/H5Fprivate.h ./src/H5Fsec2.c We now detect and use lseek64() on systems that have it (e.g., Irix64) and are able to generate >2GB files on Irix XFS file systems (and anything else that supports large files). This change also removed some warning messages from the Irix `-64' compiler. > $ ls -l istore.h5 > -rw-r--r-- 1 matzke meshtv 8605436856 Feb 17 14:03 istore.h5 ./configure.in ./src/H5Fprivate.h ./src/H5Fstdio.h We now detect and use fseek64() on systems that have it (e.g., Irix64) and are able to generate >2GB files on Irix XFS file systems (and anything else that supports large files). This change also removed some warning messages from the Iris `-64' compiler. ./src/H5E.c ./src/H5Epublic.h Added the H5E_OVERFLOW error to signal file address overflow. ./src/H5Fpublic.h ./examples/h5_chunk_read.c ./examples/h5_compound.c ./examples/h5_extend_write.c ./examples/h5_group.c ./examples/h5_read.c ./examples/h5_write.c ./html/Datasets.html ./html/Files.html ./html/H5.api.html ./html/H5.intro.html ./html/H5.sample_code.html ./html/ph5example.c ./html/review1.html ./test/cmpd_dset.c ./test/dsets.c ./test/extend.c ./test/tfile.c ./test/th5p.c ./test/theap.c ./test/tohdr.c ./test/tstab.c ./testpar/phdf5.c Renamed file access constants to follow the naming scheme. Also changed the base names a little to be more accurate as to what they do. The old names H5ACC_WRITE and H5ACC_OVERWRITE will temporarily work. H5ACC_DEFAULT --> H5F_ACC_RDONLY for H5Fopen() H5ACC_DEFAULT --> H5F_ACC_EXCL for H5Fcreate() H5ACC_WRITE --> H5F_ACC_RDWR H5ACC_OVERWRITE --> H5F_ACC_TRUNC Albert or Kim: The H5ACC_INDEPENDENT and H5ACC_COLLECTIVE macros in H5Fpublic.h should be an enum typedef and have names more like H5F_MPIO_INDEPENDENT and H5F_MPIO_COLLECTIVE. Also change the access_mode argument of H5Cset_mpio(). H5Fcreate() and H5Fopen() are more strict now about which flags are acceptable for the operation. ./src/H5Fprivate.h ./src/H5F.c ./src/H5C.c Changed the file access template to make it more general. A union contains a struct for each type of low-level driver and the default template is initialized at run-time. ./src/H5Fpublic.h ./src/H5F.c Added H5Fget_access_template() and cleaned up H5Fget_create_template(). ./src/H5C.c The H5Cset_mpi() no longer trashes the file access template when an error is detected. We check for errors and *then* update the file access template. Added H5C_close() so Albert and Kim have a place to release the MPI communicator and info from the file access property list. Kim or Albert: I notice in H5Cset_mpi() you copy the MPI communicator. Do you need to do something similar in H5C_copy()? ./src/H5F.c Added more error checking for the file creation and access property lists because it used to be possible to make the library dump core by swapping the creation and access property list ID numbers of H5Fcreate(). ./test/istore.c ./test/tfile.c ./test/th5p.c ./test/theap.c ./test/tohdr.c ./test/tstab.c ./testpar/testphdf5.c One must pass H5C_DEFAULT as the file creation or access property list in order to get the default property list. It is no longer possible to pass zero or any other arbitrary bad object ID. ./src/H5Fcore.c ./src/H5Ffamly.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5MF.c The file access property list is passed to all H5F_low_...() functions and to the drivers. ./src/H5Fcore.c The block size can be set at run time on a per-file basis instead of at compile time across all files. The "5000 items in a group test" now takes 1.6 seconds. ./src/H5private.h Removed inclusion of mpi.h and mpio.h since they're included from H5public.h. ./src/H5Cpublic.h ./src/H5C.c Added H5Cset_stdio(), H5Cset_sec2(), H5Cset_core(), H5Cset_split(), and H5Cset_family() in addition to the H5Cset_mpio() that Kim and Albert already wrote. We still need the H5Cget_driver() and an H5Cget...() counterpart for each of those functions. The split and family drivers still need a little work but I'm checking this in anyway.
* [svn-r290] Changes since 19980206Robb Matzke1998-02-191-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in ./src/H5Fprivate.h ./src/H5Fsec2.c We now detect and use lseek64() on systems that have it (e.g., Irix64) and are able to generate >2GB files on Irix XFS file systems (and anything else that supports large files). This change also removed some warning messages from the Irix `-64' compiler. > $ ls -l istore.h5 > -rw-r--r-- 1 matzke meshtv 8605436856 Feb 17 14:03 istore.h5 ./configure.in ./src/H5Fprivate.h ./src/H5Fstdio.h We now detect and use fseek64() on systems that have it (e.g., Irix64) and are able to generate >2GB files on Irix XFS file systems (and anything else that supports large files). This change also removed some warning messages from the Iris `-64' compiler. ./src/H5E.c ./src/H5Epublic.h Added the H5E_OVERFLOW error to signal file address overflow. ./src/H5Fpublic.h ./examples/h5_chunk_read.c ./examples/h5_compound.c ./examples/h5_extend_write.c ./examples/h5_group.c ./examples/h5_read.c ./examples/h5_write.c ./html/Datasets.html ./html/Files.html ./html/H5.api.html ./html/H5.intro.html ./html/H5.sample_code.html ./html/ph5example.c ./html/review1.html ./test/cmpd_dset.c ./test/dsets.c ./test/extend.c ./test/tfile.c ./test/th5p.c ./test/theap.c ./test/tohdr.c ./test/tstab.c ./testpar/phdf5.c Renamed file access constants to follow the naming scheme. Also changed the base names a little to be more accurate as to what they do. The old names H5ACC_WRITE and H5ACC_OVERWRITE will temporarily work. H5ACC_DEFAULT --> H5F_ACC_RDONLY for H5Fopen() H5ACC_DEFAULT --> H5F_ACC_EXCL for H5Fcreate() H5ACC_WRITE --> H5F_ACC_RDWR H5ACC_OVERWRITE --> H5F_ACC_TRUNC Albert or Kim: The H5ACC_INDEPENDENT and H5ACC_COLLECTIVE macros in H5Fpublic.h should be an enum typedef and have names more like H5F_MPIO_INDEPENDENT and H5F_MPIO_COLLECTIVE. Also change the access_mode argument of H5Cset_mpio(). H5Fcreate() and H5Fopen() are more strict now about which flags are acceptable for the operation. ./src/H5Fprivate.h ./src/H5F.c ./src/H5C.c Changed the file access template to make it more general. A union contains a struct for each type of low-level driver and the default template is initialized at run-time. ./src/H5Fpublic.h ./src/H5F.c Added H5Fget_access_template() and cleaned up H5Fget_create_template(). ./src/H5C.c The H5Cset_mpi() no longer trashes the file access template when an error is detected. We check for errors and *then* update the file access template. Added H5C_close() so Albert and Kim have a place to release the MPI communicator and info from the file access property list. Kim or Albert: I notice in H5Cset_mpi() you copy the MPI communicator. Do you need to do something similar in H5C_copy()? ./src/H5F.c Added more error checking for the file creation and access property lists because it used to be possible to make the library dump core by swapping the creation and access property list ID numbers of H5Fcreate(). ./test/istore.c ./test/tfile.c ./test/th5p.c ./test/theap.c ./test/tohdr.c ./test/tstab.c ./testpar/testphdf5.c One must pass H5C_DEFAULT as the file creation or access property list in order to get the default property list. It is no longer possible to pass zero or any other arbitrary bad object ID. ./src/H5Fcore.c ./src/H5Ffamly.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5MF.c The file access property list is passed to all H5F_low_...() functions and to the drivers. ./src/H5Fcore.c The block size can be set at run time on a per-file basis instead of at compile time across all files. The "5000 items in a group test" now takes 1.6 seconds. ./src/H5private.h Removed inclusion of mpi.h and mpio.h since they're included from H5public.h. ./src/H5Cpublic.h ./src/H5C.c Added H5Cset_stdio(), H5Cset_sec2(), H5Cset_core(), H5Cset_split(), and H5Cset_family() in addition to the H5Cset_mpio() that Kim and Albert already wrote. We still need the H5Cget_driver() and an H5Cget...() counterpart for each of those functions. The split and family drivers still need a little work but I'm checking this in anyway.
* [svn-r274] Moved it to testpar.Albert Cheng1998-02-131-346/+0
|
* [svn-r262] Changed an array to be allocated on the heap instead of the stack.Robb Matzke1998-02-121-6/+10
| | | | | Some OS's have problems with large arrays created on the stack and I had forgotten about that when I wrote this test.
* [svn-r260] Initial version of PHDF5 test/example program. Commit this one firstAlbert Cheng1998-02-121-0/+346
| | | | before I destroy it by accident.
* [svn-r233] Fixed order of arguments to print_func.Quincey Koziol1998-02-101-8/+8
|
* [svn-r230] Changes were actually made by Robb. I am commiting them for himAlbert Cheng1998-02-099-32/+38
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | while he is visiting LLNL. I changed the default creation template offset and length to 4. Will fix the problem later. Changes since 19980205 ---------------------- ./src/H5H.c ./src/H5Hprivate.h ./src/H5O.c ./src/H5Ocont.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Olayout.c ./src/H5Oname.c ./src/H5Onull.c ./src/H5Oprivate.h ./src/H5Odspace.c ./src/H5Ostab.c ./src/debug.c ./html/H5.format.html Added an extra 4-byte field after the heap magic number for alignment on the DEC alpha. Changed object header message alignment to 8-bytes. ./src/H5F.c ./src/H5Farray.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fstdio.c ./src/H5Gnode.c ./src/H5O.c ./src/H5Odtype.c ./src/H5P.c ./src/H5Pprivate.h ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tpublic.h ./src/H5V.c ./src/H5detect.c ./test/cmpd_dset.c ./test/dsets.c ./test/dtypes.c ./test/extend.c ./test/hyperslab.c ./test/istore.c ./test/th5p.c ./test/theap.c Fixed a few irix64 warnings regarding size_t vs. int, variables set but not used, printf formats ./config/irix64 Added `-woff 1196' to get rid of errors about __vfork() being implicitly defined in a system header file. ./src/H5B.c Fixed a stack alignment problem.
* [svn-r225] H5F_open has been changed due to the PHDF work. It needed an extraAlbert Cheng1998-02-061-1/+1
| | | | argument of access-template.
* [svn-r223] Somehow the default create template header is causing heap routinesAlbert Cheng1998-02-061-2/+2
| | | | | | failures. Row back the offset and length sizes to 4 (instead of sizeof(size_t)) for now to pass all tests. Will fix it later. (Also changed the default create template in H5F.c).
* [svn-r220] Changes since 19980204Robb Matzke1998-02-051-2/+2
| | | | | | | | | | | ---------------------- ./src/H5H.c Changed a temporary buffer from 20 bytes to 52 bytes. ./test/tfile.c Default sizes for file addresses and sizes are the same as sizeof(size_t) on the machine that creates the file.
* [svn-r210] Changes since 19980130Robb Matzke1998-01-311-3/+3
| | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./html/study.html [NEW] ./html/study_1000x1000.gif [NEW] ./html/study_250x250.gif [NEW] ./html/study_499x499.gif [NEW] ./html/study_5000x1000.gif [NEW] ./html/study_500x500.gif [NEW] ./html/study_p1.gif [NEW] ./html/study_p1.obj [NEW] The conclusions from a study of the HDF5 chunking layout. Shows overhead and disk seeking.
* [svn-r209] Changes since 19980130Robb Matzke1998-01-305-11/+148
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Added instructions for which C flags to set for debugging. ./src/H5C.c ./src/H5Cpublic.h H5Cset_chunk() takes const pointer. ./src/H5D.c ./src/H5Dprivate.h ./src/H5Dpublic.h Added H5Dextend() to extend the dimensions of a dataset. ./src/H5Osdspace.c ./src/H5P.c ./src/H5Pprivate.h ./src/H5Ppublic.h ./test/cmpd_dset.c ./test/dsets.c ./test/th5p.c Added the optional `maxdims' argument to H5Pcreate_simple() and defined constant H5P_UNLIMITED which can appear in the maxdims. Added `const' to arguments. Implemented H5Pcopy() Removed the unused file argument from H5P_modify. Added H5P_extend(). Removed the `flags' field from simple data types and we determine if the `max' or `perm' arrays are valid by looking at the pointer. Cleaned up the H5O_sdspace_debug output. ./src/H5T.c Fixed a printf format. ./MANIFEST ./test/Makefile.in ./test/extend.c [NEW] Added a test for multi-dimensional unlimited dimensions.
* [svn-r204] Changes since 19980129Robb Matzke1998-01-303-3/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./RELEASE Added Library functions that I missed the first time. ./html/Datasets.html Added an example for Elena's question about how to read a single member of a compound data type so it becomes an array of that member in memory. ./src/H5Pprivate.h Fixed the prototype for H5P_get_hyperslab() to match the definition. ./src/H5Psimp.c Oops, added the kludge back in for the offset argument, which is still an `intn' instead of a `size_t'. ./src/H5.c ./src/H5public.h ./src/H5F.c ./src/H5T.c ./src/H5Tpublic.h Changed H5init() to H5open() and added an H5close() to fit our create/open/close paradigm. The H5open() happens automatically on the first call to the HDF5 library. The H5close() happens automatically on exit() (unless the app turns off that feature). H5close() closes all datasets and files and releases all resources used by the library. ./test/dsets.c Added calls to H5open() and H5close() to test them. ./test/dtypes.c Removed call to H5init() since we no longer need it there. ./src/H5Fstdio.c Changed the PABLO_MASK to the right value. Thanks Kim.
* [svn-r203] Changed H5Pcreate_simple call...Quincey Koziol1998-01-301-9/+3
|
* [svn-r200] Purpose: bug fix.Albert Cheng1998-01-301-1/+8
| | | | | | | | | | | | | | Problem: Step 8 failed because H5Pcreate_simple expects size_t dimension array but the code used an int array. (In IRIX64 -64 mode, size_t is a 64bit unsigned long but ints are only 32 bits long.) casting it to size_t* just avoided warning message but did not change the data type. Solution: Throw in a kludge by using a temporary dimension array of size_t. Can't change the type of h_size since it is also used for the hyperslab routine which expects an int dimension array. The Hyperslab routine will be changed. Put in a patch for now.
* [svn-r194] Changes since 19980128Robb Matzke1998-01-291-0/+4
| | | | | | | | | | | | | | ---------------------- ./src/H5P.c Removed H5Pcreate() ./src/H5Psimp.c Copy int[] return value from H5P_get_hyperslab() to size_t[] argument to pass to other hyperslab functions. ./test/dsets.c Added a call to H5Eprint() to help track down Alberts O2k bug.
* [svn-r189] Minor cleanups for clean compilation on IRIX 6.2Quincey Koziol1998-01-282-7/+7
|
* [svn-r186] Changes since 19980128Robb Matzke1998-01-282-16/+188
| | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/conclude.in The maintainer-clean target removes Emacs backup files, mirroring backup and contrib files, core files, and profile output files in addition to what it used to remove. ./src/H5D.c Fixed a buffer allocation bug in the output pipeline. ./src/H5Gnode.c Fixed a comparison against size_t ./test/Makefile.in Added the other temporary h5 files to the `MOSTLYCLEAN' var. ./test/cmpd_dset.c Added four tests for partial I/O. Don't you just love it when something works on the first try!
* [svn-r185] Changes since 19980128Robb Matzke1998-01-282-11/+78
| | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5D.c ./src/H5Dpublic.c Added H5Dget_space(). ./src/H5Gstab.c ./src/H5H.c Fixed a comparison with size_t against <0. ./src/H5P.c ./src/H5Pprivate.h ./src/H5Ppublic.h Changed `intn' to `int' for public function args and returns. H5Pget_hyperslab() returns the dimensionality. ./test/testhdf5.h Clears error stack more frequently. ./src/H5Psimp.c ./test/cmpd_dset.c Impelementing data space conversion.
* [svn-r184] Purpose: FeatureAlbert Cheng1998-01-281-0/+3
| | | | | | | | | Problem: Some *.h5 files are left behind after tests. Solution: Added the MOSTLYCLEAN line for those few .h5 to be removed if "make clean" is called. Did not use "*.h5" because of concern that it may blow away legitimate .h5 files. Though it is possible to put legitimate .h5 in a subdirectory, it is better to play it safe this way.
* [svn-r174] Switched calls from H5Pcreate to H5Pcreate_simpleQuincey Koziol1998-01-273-35/+12
|
* [svn-r170] Changes since 19980123Robb Matzke1998-01-261-2/+43
| | | | | | | | | | | | | | | | | ---------------------- ./src/H5D.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tprivate.h ./src/H5Tpublic.h ./test/cmpd_dset.c Added support to turn background buffer on/off to help speed up conversions. Currently, every type of conversion turns it off except compound-->compound conversions which always turn it on. In the future the compound-->compound conversions might be more frugal.
* [svn-r169] Forgot this file the first time...Robb Matzke1998-01-231-0/+307
|
* [svn-r168] Changes since 19980122Robb Matzke1998-01-231-2/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST Added new files. ./src/H5D.c Added support for partial datatype I/O which is needed when merging struct members between file and disk. This isn't the efficient version because the merge requires an extra gather (step 1b in my pipeline diagram) that isn't turned off when it isn't needed. ./src/H5T.c ./src/H5Tpkg.h ./src/H5Tprivate.h ./src/H5Tpublic.h Conversion functions take an extra argument which is a pointer to a blob of private data that can be used by the conversion function to save anything that's expensive to compute and is constant for a particular conversion path. ./src/H5Tconv.c Compound data type conversion is beginning to work! We can handle conversions between compound types that have members which are not arrays. It also supports partial conversion so we can omit certain members of the source and not clobber extra members in the destination. ./test/Makefile.in ./test/cmpd_dset.c [NEW] Added a test case that demonstrates how to use compound data types in a dataset. The output doesn't match the output of the other test cases yet, the the entire example is more readable and written entirely with the API.
* [svn-r164] Changes since 19980122Robb Matzke1998-01-225-7/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/*.h Fixed indentation where indent(1) screwed up. This isn't by any means the final say, but it's better than it was. ./src/H5A.c ./src/H5Aprivate.h ./src/H5Apublic.h ./src/H5C.c ./src/H5D.c ./src/H5E.c ./src/H5F.c ./src/H5G.c ./src/H5M.c ./src/H5P.c ./src/H5T.c ./src/H5Tconv.c ./src/debug.c ./test/dtypes.c ./test/istore.c ./test/theap.c ./test/tohdr.c ./test/tstab.c Removed some atom functions from the API and made them library-scope. Also changed some names by removing the redundant `atom' from the name and by adding a `_' after the `H5A'.
* [svn-r163] Changes since 19980121Robb Matzke1998-01-221-5/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./Makefile.in Added more dependencies to .PHONY. ./src/H5D.c The write side of the I/O pipeline is implemented now too. Things are looking good for the prototype and it's just a matter of populating the library with the data type and data space conversion functions. ./src/H5Farray.c ./src/H5Fprivate.h ./test/istore.c Changed the order of the arguments for H5F_arr_read() and H5F_arr_write(). ./src/H5P.c ./src/H5Pprivate.h Changed the names of the arguments of H5P_find(). Fleshed out the mgath and fscat callback types. ./src/H5Psimp.c Added stubs for H5P_simp_mgath() and H5P_simp_fscat() that operate on the entire data space. Quincey, once you have the data space hyperslab stuff in place let me know and I'll finish the H5P_simp_*() functions to do partial I/O. Or you can take a look at it too if you like; there's some comments in there for you. ./src/H5V.c ./src/H5Vprivate.h Changed dimensionality arguments from `size_t' to `intn' to be consistent with the rest of the library and to get rid of warnings on 64-bit Irix.
* [svn-r158] Changes since 19980116Robb Matzke1998-01-201-7/+8
| | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5AC.c ./src/H5ACprivate.h ./src/H5B.c ./src/H5D.c ./src/H5Farray.c ./src/H5Fprivate.h ./src/H5V.c ./src/H5Vprivate.h Fixed indent oopses. ./src/H5D.c ./src/H5Fprivate.h ./src/H5Farray.c ./test/istore.c We can now perform partial I/O on contiguous storage transferring between a hyperslab of file storage and a hyperslab of memory. However, partial I/O hasn't been added to the I/O pipeline yet in H5D.c
* [svn-r157] Reformatted code with indent...Quincey Koziol1998-01-1613-2944/+2825
|
* [svn-r155] Changes since 19980114Robb Matzke1998-01-162-21/+25
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./html/Datasets.html Removed some archaic comments about data spaces. Fixed example code. ./MANIFEST ./html/H5.format.html ./src/H5O.c ./src/H5Oprivate.h ./src/H5Ocstore.c [DELETED] ./src/H5Oistore.c [DELETED] ./src/H5Olayout.c [NEW] ./src/Makefile.in ./test/istore.c Replaced H5O_CSTORE and H5O_ISTORE messages with a more general H5O_LAYOUT message. ./src/H5D.c ./src/H5Dprivate.h ./src/H5Dpublic.h A little more work on the pipeline. Access to the file data is through the new H5F_arr_read() and H5F_arr_write() which do I/O on hyperslabs of byte arrays and don't depend on data layout. This should simplify the I/O pipeline quite a bit. I also added another argument to H5Dread() and H5Dwrite() to describe the hyerslab of the file array on which I/O is occuring. We discussed this at last week's meeting. ./src/H5Farray.c [NEW] Added functions that sit on top of H5F_block_read() and H5F_istore_read() and implement a common set of functions between all layouts. This means I/O of hyperslabs of byte-arrays in the file to arrays of bytes in memory. When operating on arrays of elements (>1byte) then we just add another dimension. That is, a 10x20 array of int32 becomes a 10x20x4 array of bytes. [This is the area I'll be working on most of next week to implement partial I/O for contiguous data and to improve performance for chunked data.] ./src/H5Fistore.c ./src/H5Fprivate.h Replaced the H5F_istore_t data type with the layout message H5O_layout_t which looks almost the same. Eventually I'd like to rename `istore' to `chunked' everywhere and use `istore' for 1-d storage where the chunks are all different sizes like in the small object heap where each object is a chunk. ./src/H5V.c Changed ISTORE to LAYOUT in one place. ./test/dsets.c Fixed for extra argument to H5Dread() and H5Dwrite().
* [svn-r153] Changes since 19980108Robb Matzke1998-01-141-0/+87
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./src/H5Dconv.c [REMOVED] ./src/H5Tconv.c [NEW] ./src/Makefile.in Changed H5Dconv.c to H5Tconv.c ./html/Datatypes.html Updated data type conversion section. ./html/H5.apiv2.html Removed sections about datasets and data types since they're covered in their own chapters. ./src/H5D.c Supports data type conversion. ./src/H5Odtype.c ./src/H5Tpkg.h Changed `lo_pad' and `hi_pad' to `lsb_pad' and `msb_pad'. ./src/H5T.c ./src/H5Tpkg.h ./src/H5Tprivate.h ./src/H5Tpublic.h ./src/H5detect.c Added predefined data types. Added query/set more properties. Added type conversion infrastructure. ./test/dsets.c Tests data type conversion during read.
* [svn-r152] Changes since 19980107Robb Matzke1998-01-091-1/+86
| | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./html/Datatypes.html Updated to match code. ./src/H5Odtype.c ./src/H5Oprivate.h ./src/H5Tpkg.h ./src/H5detect.c Changed H5T_FIXED to H5T_INTEGER. ./src/H5T.c ./src/H5Tprivate.h ./src/H5Tpublic.h ./test/dtypes.c Implemented lots of type properties. ./src/H5detect.c ./src/H5Tpublic.h It is no longer necessary to call H5init() before using a predefined data type.
* [svn-r151] Changes since 19980105Robb Matzke1998-01-075-149/+115
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/freebsd2.2.1 ./config/linux Added -UH5O_DEBUG to the debug flags. Turn this on to get lots of lines on stderr to show what objects are opened and closed. ./src/H5C.o ./src/H5Cpublic.h ./test/dsets.c ./test/tfile.c Split H5Cget_prop() and H5Cset_prop() into functions for each property. ./src/H5D.c ./src/H5Dpublic.h ./src/H5Gstab.c ./src/H5O.c ./src/H5Ocont.c ./src/H5Ocstore.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Oistore.c ./src/H5Oname.c ./src/H5Onull.c ./src/H5Oprivate.h ./src/H5Osdspace.c ./src/H5Ostab.c ./src/H5P.c ./src/istore.c ./test/tohdr.c Object header functions now understand constant vs. non-constant messages. ./src/H5F.c ./src/H5Fprivate.h The file OID can be closed before other OID's. ./src/H5Flow.c H5F_addr_defined() is a macro in this file. ./src/H5G.c ./src/H5Gpublic.h ./test/tstab.c A current working group cannot be deleted. ./src/H5Gent.c ./src/H5Gpkg.h Removed unused functionality. ./src/H5public.h Includes <sys/types.h> for size_t.
* [svn-r150] Changes since 19971219Robb Matzke1998-01-064-120/+126
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5private.h Changed HDF5_MAJOR_VERSION to 5 ./src/H5Aprivate.h ./src/H5Apublic.h Added group atoms. ./src/H5D.c ./src/H5P.c ./test/istore.c ./test/tohdr.c ./test/tstab.c Updated for symbol table interface changes. ./src/H5F.c ./src/H5Fprivate.h Simpler handling of special case files: empty files and files with a single object. ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5Gpublic.h ./src/H5Gshad.c (DELETED) ./src/H5Gstab.c ./src/Makefile.in Removed shadows, simplifying code. Symbol table entries are allowed to cache only constant meta data. Fixed naming. ./src/H5O.c ./src/H5Oprivate.h Access to object headers is always done through a symbol table entry instead of a file address. Added stubs for opening and closing object headers to be used when deletion is implemented.
* [svn-r149] ./test/istore.cRobb Matzke1997-12-191-4/+5
| | | | Flipped a couple constants for testing. Nothing important.
* [svn-r147] ./test/dsets.cRobb Matzke1997-12-165-5/+21
| | | | | | | | | | | ./test/dtypes.c ./test/hyperslab.c ./test/istore.c Added a definition for __FUNCTION__. Changed a couple variable types. ./test/testhdf5.h The error stack is printed when something goes wrong.
* [svn-r143] ./test/dsets.cRobb Matzke1997-12-114-95/+153
| | | | | | | | | | | | Added test for creation of chunked datasets. ./test/dsets.c ./test/istore.c ./test/tfile.c Template changes. ./test/th5p.c Accommodated changes to H5P.
* [svn-r140] ./test/Makefile.inRobb Matzke1997-12-1012-455/+530
| | | | | | | | | | | | | | | | | | | | | | | | | Added new tests. ./test/dsets.c NEW Tests datasets. ./test/dspace.c NEW Tests data spaces. ./test/dtypes.c NEW Tests data types. ./test/istore.c ./test/tfile.c ./test/th5p.c ./test/theap.c ./test/tohdr.c Changed to work with new function names. ./test/testhdf5.c Removed the data type and dataset tests since they're now in their own files. They had to be rewritten because of extensive changes to those interfaces.
* [svn-r136] ./MANIFESTRobb Matzke1997-11-145-111/+181
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./src/Makefile.in Added H5Ffamily.c and H5Fsplit.c ./src/H5B.c ./src/H5Bprivate.h ./src/H5Gnode.c Added `const' to sublass arguments. ./src/H5F.c ./src/H5Flow.c ./src/H5Fsec2.c Make sure file buffers get flushed during a call to H5Fflush(). Check for overflow in address encoding and decoding. ./src/H5Ffam.c ./src/H5Fprivate.c ./test/istore.c Implementation of file families so 32-bit machines can access 64-bit files. ./src/H5Oprivate.h Removed H5O_NO_ADDR constant. ./config/freebsd2.2.1 ./config/linux Added -DH5G_DEBUG and -DH5F_DEBUG to the list of debugging flags. ./html/H5.format.html Changed some <offset>-sized things to <length>-sized things. ./src/H5AC.c ./src/H5ACprivate.h ./src/H5B.c ./src/H5Bprivate.h ./src/H5C.c ./src/H5D.c ./src/H5F.c ./src/H5Fcore.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5Gshad.c ./src/H5Gstab.c ./src/H5H.c ./src/H5Hprivate.h ./src/H5MF.c ./src/H5MFprivate.h ./src/H5O.c ./src/H5Ocont.c ./src/H5Oistore.c ./src/H5Oprivate.h ./src/H5Ostab.c ./src/H5Ostdst.c ./src/H5pivate.h ./src/debug.c ./test/istore.c ./test/theap.c ./test/tohdr.c ./test/tstab.c Lots of changes caused by generalizing addresses. The haddr_t is now a struct, so you can no longer perform arithmetic on it. But since it's small, simple, and often used, storage is allocated like with an integer. But we always pass them around by reference. That is, when using an address in another struct, allocate space: struct my_struct { char *name; haddr_t address; } x; But when passing it to a function, pass by reference: H5F_addr_print (stderr, &(x.address)); Addresses should be initialized with H5F_addr_undef (&(x.address)); Functions for operating on addresses are in H5Flow.c and begin with H5F_addr_... Functions never return haddr_t or haddr_t*; they always pass them through arguments instead. A function that returns an address through an argument does so with its last argument and it is marked with `/*out*/'. Calls to such functions also mark output-only arguments with `/*out*/' ./src/H5Fsplit.c (new) A two-member family where all meta data goes in the first member and all raw data goes in the second member. ./src/H5B.c ./src/H5D.c ./src/H5F.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fstdio.c ./src/H5Gnode.c ./src/H5H.c ./src/H5MF.c ./src/H5MFprivate.h ./src/H5O.c Differentiate between meta data storage and raw data storage. Provide a mechanism so that the file driver can extend the file to allocate more memory. ./src/H5E.c ./src/H5Epublic.c Added the error H5E_TRUNCATED to be reported when the file is shorter than the length recorded in the boot block. ./src/H5F.c Added H5F_locate_signature() so we only do it in one place now. ./INSTALL ./INSTALL_MAINT Just a couple clarifications. ./html/ExternalFiles.html ./html/storage.html Documents how external files work. ./test/hyperslab.c ./test/istore.c Fixed printf's on 64-bit machines. ./test/istore.c Added ifdef's to test the split file driver.
* [svn-r135] ./config/linuxRobb Matzke1997-11-072-1/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./config/freebsd2.2.1 Rewritten to be more flexible. ./src/H5AC.c ./src/H5ACprivate.h ./src/H5F.c ./src/H5H.c ./src/H5Gpkg.h ./src/H5Gshad.c ./src/H5O.c ./test/istore.c ./test/tstab.c Accumulates cache statistics and displays the results on stderr when the file is closed if it was opened with H5F_ACC_DEBUG passed into H5F_open() ./src/H5B.c ./src/H5Bprivate.h ./src/H5Fistore.c ./src/H5Gnode.c Added more debugging which is turned on if H5B_DEBUG is defined on the compile command (see config/linux). Fixed a couple of bugs with left insertions which are used by the indexed storage stuff. ./src/H5Flow.c Fixed a memory leak. ./src/H5Fprivate.h Fixed warnings about shifting more than size of object. ./src/H5Fstdio.c Fixed seek optimizations back to the way Quincey originally had them. ./src/H5V.c Removed unused variables.
* [svn-r133] ./MANIFESTRobb Matzke1997-10-221-34/+194
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./src/Makefile.in Added new files. ./html/H5.apiv2.html Added documentation for group stuff. ./src/H5private.h ./src/H5E.c ./src/H5Epublic.h ./src/H5F.c ./src/H5Flow.c NEW ./src/H5Fprivate.h ./src/H5Fsec2.c NEW ./src/H5Fstdio.c NEW Low-level file driver is selected at runtime. ./src/H5Fprivate.h Got rid of `shift >= sizeof operand' warnings on big endian machines. ./src/H5Fistore.c ./test/istore.c Still working on indexed storage... ./src/H5H.c ./src/H5Hprivate.h Removed alignment constraints.
* [svn-r131] Tests hyperslabs.Robb Matzke1997-10-201-0/+1192
|
* [svn-r129] Changes since 19970916Robb Matzke1997-10-203-11/+462
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/depend.in Fixed backslashes in sed script because the H5Gnode.c dependency info was disappearing. You'll have to rerun config.status to rebuild the Makefiles unless you use gnu make. ./config/conclude.in Also removes emacs backup files, TAGS, and svf backup files. ./config/linux Grouped gcc flags and added provisions for debugging vs. production. ./html/H5.format.html Updated messages 0x0008, 0x0009, and 0x000A. ./html/storage.html Documentation describing storage schemes. ./src/Makefile.in ./test/Makefile.in New source files. ./src/H5A.c ./src/H5Apublic.h ./src/H5C.c Changed VOIDP to void* in a couple places. ./src/H5AC.c ./src/H5ACprivate.h ./src/H5B.c ./src/H5Bprivate.h ./src/H5G.c ./src/H5Gnode.c ./src/H5Gprivate.h ./src/H5H.c ./src/H5O.c Removed `const' from some variables because H5G_node_found() wanted to modify it's udata argument. Removing const there caused it to cascade to these other locations. ./src/H5AC.c ./src/H5ACprivate.h ./src/H5B.c ./src/H5Gnode.c ./src/H5Gstab.c ./src/H5H.c ./src/H5O.c Added an extra argument to H5AC_find_f() and H5AC_protect(). This arg gets passed to the load() method. Also added an extra argument to the H5AC_find() macro. ./src/H5B.c ./src/H5Bprivate.h ./src/H5Gnode.c Extra argument passed to the sizeof_rkey() method. ./src/H5Fprivate.c ./src/H5Fistore.c (new) Added indexed I/O operations. ./src/H5G.c ./src/H5Gnode.c ./src/H5Gprivate.h Beginning to add H5G_open/close and related bug fixes. ./src/H5Oprivate.h ./src/H5Oistore.c (new) Added the H5O_ISTORE messsage (0x0008) for indexed storage of objects. ./src/H5private.h Added extra braces around both sides of the FUNC_ENTER() and FUNC_LEAVE() macros so FUNC_ENTER() can appear before declarations or after executable statements the second case is used by H5G_namei() to initialize output arguments to sane values before FUNC_ENTER() might return failure. int f () { int decl1; printf ("This happens before FUNC_ENTER()\n"); FUNC_ENTER (...); int another_declaration; ./src/H5B.c ./src/H5Bprivate.h ./src/H5Gnode.c Extra arguments for key encoding and decoding. ./src/H5E.c ./src/H5Epublic.h ./src/H5Fistore.c ./src/H5Oistore.c ./src/H5Oprivate.h Indexed, chunked, sparse storage (not ready for general consumption yet). ./src/H5V.c (new) ./src/H5Vprivate.h (new) ./test/hyperslab.c (new) Vector, array, and hyperslab functions. ./src/H5B.c ./src/H5Bprivate.h ./src/H5Fistore.c ./src/H5Gnode.c ./src/H5V.c ./src/H5Vprivate.h ./test/hyperslab.c Added functionality for indexed storage. ./src/H5F.c Fixed problems with seek optimizing. Recommend we disable it until we can implement it in the file/address class since all of HDF5 must be aware of it. ./src/H5O.c Fixed comeent speling erorr :-) ./MANIFEST Added new files. ./config/conclude.in Added the word `Testing' to the test cases. So if a test program is called hyperslab then the make output will contain the line `Testing hyperslab'. ./config/linux The default file I/O library is Posix section 2 on my linux machine so I can do some I/O performance testing. ./src/H5C.c ./src/H5Cprivate.h ./src/H5Cpublic.h Added ability to set size of indexed-storage B-tree. ./src/H5D.c ./src/H5E.c ./src/H5Epublic.h ./src/H5F.c ./src/H5Fprivate.h ./src/H5G.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5Gpublic.h ./src/H5Gshad.c ./src/H5Gstab.c ./test/stab.c Changed `directory' to `group' in numerous places. ./src/H5private.h The FILELIB constant can be set on the compile command-line. ./src/istore.c NEW Tests for indexed storage.
generated by cgit v0.12 at 2024-08-26 05:17:55 (GMT)