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* Remove HD from C std lib file ops (#3206)Dana Robinson2023-06-2927-157/+157
| | | | | | | | | * HDfclose * HDferror * HDfeof * HDfflush * HDfopen * HDfread * HDfwrite
* Remove HD from strto* calls (#3204)Dana Robinson2023-06-293-7/+7
| | | | | | | | * HDstrtod * HDstrtol * HDstrtoll * HDstrtoul * HDstrtoull * HDstrtoumax
* Rename HDexit() and related to exit(), etc. (#3202)Dana Robinson2023-06-2963-335/+335
| | | | | * HDatexit * HDexit * HD_exit
* Remove some "Programmer" comments (#3209)Dana Robinson2023-06-2917-65/+24
| | | | | | | | | | These are meaningless noise. Removes the "Programmer" lines on comment start lines: /* Programmer: John Smith These complicate my sed script that will rip out the rest of the comments.
* Rename HDato*() to ato*() (#3201)Dana Robinson2023-06-2915-42/+42
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* Remove HD from protected POSIX calls (#3203)Dana Robinson2023-06-293-5/+5
| | | | | | | | | | | These calls are non-C99 but protected by ifdefs and have no Windows equivalents: * HDalarm * HDasprintf * HDclock_gettime * HDfcntl * HDgethostname * HDgetrusage * HDsymlink
* Remove HD from memory allocate/free calls (#3195)Dana Robinson2023-06-28122-3191/+3188
| | | | | | * HDcalloc * HDfree * HDmalloc * HDrealloc
* Remove HD from HDposix_memalign() (#3196)Dana Robinson2023-06-281-2/+2
| | | | The posix_memalign call is only used in the direct VFD, which can only be built if posix_memalign() is available.
* Rename HD(f)printf() to (f)printf() (#3194)Dana Robinson2023-06-28136-10982/+10743
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* Rename HDassert() to assert() (#3191)Dana Robinson2023-06-2858-1508/+1498
| | | | | * Change HDassert to assert * Fix bin/make_err
* Rename HDpipe() to pipe() (#3192)Dana Robinson2023-06-281-25/+25
| | | Pipe is POSIX but implemented in Microsoft's CRT
* Rename HDqsort() to qsort() (#3193)Dana Robinson2023-06-285-14/+14
| | | | | | | | | * Rename HDqsort() to qsort() * Committing clang-format changes --------- Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Remove HD from fork/exec*/wait* (#3190)Dana Robinson2023-06-287-59/+59
| | | | These are not C99 but are hidden behind ifdefs and are highly unlikely to ever have non-POSIX equivalents.
* Remove HDva_(arg|copy|end|start) (#3184)Dana Robinson2023-06-284-14/+14
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* Remove dead code behind #ifdef OLD_WAY (#3163)Dana Robinson2023-06-211-37/+3
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* Many fixes to various compiler warnings (#3124)Sean McBride2023-06-1976-561/+576
| | | | | | | | | | | * Fixed various -Wmissing-variable-declarations by adding static keyword * In a few cases, renamed the variable suffix from _g to _s. * Fixed some -Wmissing-variable-declarations by using different declaration macros * Fixed various -Wconditional-uninitialized warnings by just initializing variable to zero * Fixed various -Wcomma warnings * Fixed clang -Wstrict-prototypes warnings * Fixed various -Wunused-variable warnings * Updated some casts to fix the only 3 -Wcast-qual warnings * Fixed the only -Wsometimes-uninitialized warning
* Remove HD prefix from network calls (#3142)Dana Robinson2023-06-161-5/+5
| | | HDsocket(), etc. Only affects the mirror VFD and its test code.
* Many clang -Wextra-semi-stmt fixes (#2537)Sean McBride2023-06-1688-1696/+1696
| | | | | * Adds semicolons to function-like macros * Adds a do..while(0) loop to some macros * Removes semicolons when inappropriate, especially H5E_TRY_BEGIN/END
* Revert long double checks (#3133)Dana Robinson2023-06-151-3/+112
| | | | | | | * Revert "Remove long double conversion work-arounds (#3097)" This reverts commit 1e1dac1dac58fa18f6b7788346d1ba7d3315b0f9. * Update comments to reflect newer systems
* Fix function name in comment in ros3 VFD (#3131)H. Joe Lee2023-06-151-4/+1
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* Fix spelling issues flagged by codespell (#3130)Dana Robinson2023-06-153-3/+3
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* Fix a misc warning in test/vol.c (#3112)Dana Robinson2023-06-131-5/+6
| | | | The compiler complains about using integers instead of size_t for some sizes.
* Remove long double conversion work-arounds (#3097)Dana Robinson2023-06-121-112/+3
| | | | | | | | | | | | | | | | | | | | | Several options and public symbols that were provided to paper over non-standard long double conversions between signed/unsigned long and long long values were removed from the Autotools and CMake. These were added twenty years ago, when C99 and 64-bit platforms were less common and are no longer needed. Autotools: --enable-dconv-accuracy CMake: HDF5_WANT_DATA_ACCURACY H5pubconf.h symbols: H5_WANT_DATA_ACCURACY H5_LDOUBLE_TO_LONG_SPECIAL H5_LONG_TO_LDOUBLE_SPECIAL H5_LDOUBLE_TO_LLONG_ACCURATE H5_LLONG_TO_LDOUBLE_CORRECT H5_DISABLE_SOME_LDOUBLE_CONV
* Remove code paths where long long < 8 bytes (#3098)Dana Robinson2023-06-122-31/+4
| | | | | The C99 standard says that a long long is 8+ bytes. This change removes a few parts of the code where we assume that a long long could be less than that.
* Address memory issues when copying empty enums (#3088)Dana Robinson2023-06-121-476/+508
| | | | | | | | | | When copying an empty enum type (including implicitly, as when an enum is contained in a compound type), the library would allocate 0-size blocks of memory and attempt to memcpy 0 bytes from NULL pointers, which are undefined behavior. In debug mode, the library would raise an assert in H5MM. The library now avoid undefined memory operations when copying empty enum types and a test that copies empty enums has been added.
* Convert H5F haddr_t macros to H5 (#3039)Dana Robinson2023-06-0511-155/+155
| | | | | | | | | | | | | | | | | | | | | | Several macros for handling haddr_t values exist in H5Fprivate.h and have H5F prefixes, even though they have nothing to do with a particular file (e.g., H5F_addr_lt()). These macros have been moved to H5private.h and renamed to have an H5 prefix. Affected macros: H5F_addr_overflow H5F_addr_defined H5F_addr_eq H5F_addr_ne H5F_addr_lt H5F_addr_le H5F_addr_gt H5F_addr_ge H5F_addr_cmp H5F_addr_overlap H5F_addr_pow2 was unused and removed instead of converted.
* Only pass efc pointer to H5F__efc_open (#3026)Dana Robinson2023-05-301-325/+325
| | | | The H5F__efc_open() API call only needs the efc pointer, so there is no need to pass the entire file struct in.
* API test updates (#3018)jhendersonHDF2023-05-2624-3640/+3413
| | | | | | | | | | | | | | | | | | | | | | | | | * Remove macros from api tests (#2929) * Remove macros and undefined callbacks (#2959) * Remove remaining macros from H5_api_tests_disabled.h (#2968) * Put some vol capability checks in testpar tests and remove remaining warnings (#2995) * API tests datatype generation cleanup * Clean up API tests' random datatype generation and fix bug with enum datatype generation * Init parallel API tests with MPI_THREAD_MULTIPLE * HDF5 API tests - Check VOL connector registration * Determine whether a VOL connector failed to load before running API tests * Cleanup some usages of H5VL_CAP_FLAG_CREATION_ORDER in API tests * Remove some now-unused macros from H5_api_tests_disabled.h * Enable HDF5 API tests by default * Implement CMake option to install HDF5 API tests * Check for invalid AAPL from H5Acreate * Enable building of VOL connectors alongside HDF5 in CMake * Prepend CMake VOL URL option indices with 0s so they come in order * Don't turn on API tests by default yet * Document VOL connector FetchContent functionality * Add release note for API test updates * Only install testing library if API tests are installed * Fix grammar
* Suppress vfd.c test warning (#3014)Dana Robinson2023-05-251-8/+13
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* Fix missing/misplaced h5_reset calls (#3001)Dana Robinson2023-05-232-17/+17
| | | | | | Fixes failures when running tests after building with thread-safety w/ code stacks on. Fixes #2990
* Fix 'datatype' misspellings ('dataype') (#2984)Dana Robinson2023-05-196-18/+18
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* Add test for HDstrcasestr macro (#2115)jhendersonHDF2023-05-191-3/+41
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* Remove unnecessary fields from cache structs (#2951)Quincey Koziol2023-05-154-49/+3
| | | | | | | | | | | | * Remove unnecessary 'magic' field from cache structs Signed-off-by: Quincey Koziol <quincey@koziol.cc> * Committing clang-format changes --------- Signed-off-by: Quincey Koziol <quincey@koziol.cc> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix warning in cache_common.c (#2952)jhendersonHDF2023-05-151-65/+77
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* Move functions into more focused source code modules (#2936)Quincey Koziol2023-05-121-2/+2
| | | | | | | | | | | | | | * Move functions into more focused source code modules, along with a small # of directly secondary effects. No actual changes to the contents of any moved routines. Signed-off-by: Quincey Koziol <quincey@koziol.cc> * Committing clang-format changes --------- Signed-off-by: Quincey Koziol <quincey@koziol.cc> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* More code duplication reduction (#2930)Quincey Koziol2023-05-091-37/+13
| | | | | | | | | | | | | | | | | | | | | | | | * Add failure value where it's missing from 1+ macros. Clean up whitespace / continuation characters ('\'). Made hash-table macros generic for use in both the package header and test header. Remove duplicated copy & pasted macros (by hoisting difference into #ifdef'd macro). Updated and re-flowed comments to read better. Also clean up a few compiler warnings in production builds. Signed-off-by: Quincey Koziol <quincey@koziol.cc> * Committing clang-format changes * Remove unused variable warning in H5C.c (#2844) * Remove trailing /* NDEBUG */ comment from #endif's * Committing clang-format changes --------- Signed-off-by: Quincey Koziol <quincey@koziol.cc> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix CMake generator expression syntax (#2909)Allen Byrne2023-05-052-23/+23
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* Fix mirror VFD test timeouts (#2915)Quincey Koziol2023-05-051-2/+17
| | | | | | | | | * Close & re-open socket when looping for timeouts * Committing clang-format changes --------- Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Minor tidying of API tests files (#2878)jhendersonHDF2023-05-032-7/+9
| | | | | | * Minor tidying of API tests files * Remove old API test configuration setting
* Changes to isolate API Test option files and use fetchcontent (#2880)Allen Byrne2023-05-03109-36581/+52
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* Add initial version of HDF5 API tests (#2877)jhendersonHDF2023-05-02159-31/+176005
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* Skip page buffer test for "no selection I/O cause" when using split or multi ↵Neil Fortner2023-05-011-0/+11
| | | | driver (#2866)
* Remove "the the" from comments and docs (#2865)Dana Robinson2023-05-011-3/+3
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* Implement selection I/O with type conversion (#2823)Neil Fortner2023-04-2813-1/+3282
| | | | | Initial implementation of selection I/O with type conversion. Allows Parallel collective I/O with type conversion, as long as selection I/O is enabled.
* Fix v1 object header gap bug in H5Ocopy (#2785)jhendersonHDF2023-04-261-0/+64
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* Allow H5P_DEFAULT in H5Pget_vol_cap_flags and H5Pget_vol_id (#2807)jhendersonHDF2023-04-251-1/+25
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* H5Odtype.c decode cleanup (#2797)Dana Robinson2023-04-251-84/+87
| | | | * Adds bounds checking to H5Odtype.c * Minor tidy of dtypes test
* Sanitize the attribute object header msg code (#2749)Dana Robinson2023-04-191-2/+5
| | | | | Adds: * Bounds checks on buffer access * Better memory cleanup
* Jira issue OESS-337: Create test for H5VLconnector_info_to_str (#2334)raylu-hdf2023-04-181-6/+152
| | | * Jira issue OESS-337: Adding a test case for H5VLconnector_info_to_str, H5VLconnector_str_to_info, and H5VLconnector_free_info. The test may need to change after the possible changes of the parameters of the API functions.
* Remove -Wunused-but-set-variable warnings in tests (#2661)Allen Byrne2023-04-113-31/+6
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