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* Add the first version of group performance code.Muqun Yang2021-06-291-0/+5261
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* Add the Makefile.am for the performance.Muqun Yang2021-06-291-0/+3
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* Parallel updates and fixes for VFD SWMR (#705)Dana Robinson2021-05-285-29/+93
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Brings CMake updates from develop * Brings reduction in pedantic casts from develop * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Formatted source * Bring over some VOL registration changes * VOL cleanup * H5VL_request_status_t substitutions * H5F.c cleanup * Minor API tweaks from develop * Moves H5G package init/teardown to H5Gint.c * H5G cleanup * H5M cleanup * H5SM cleanup * H5T cleanup * H5R cleanup * H5Lpublic.h cleanup * H5L cleanup * H5O cleanup * H5A, H5CS, and H5AC cleanup * Moved H5A init/teardown code to H5Aint.c * Moves H5D I/O functions to H5D.c * H5D cleanup * Misc minor cleanup * H5P close cleanup * H5Tpublic.h cleanup * Fixes err_compat test * H5PLpublic.h cleanup * Updates H5Ppublic.h * H5Fpublic.h updates * H5A.c cleanup * Brings over H5Aexists and related changes * Brings CMake shell testing changes from develop * Close callback changes * H5R and H5Tcommit normalization * err_compat test works now * H5O tweaks * Updates VOL registration code * Brings over H5VL_create_object * H5Tconv.c reformatting * H5T.c tweaks * Brings datatype and reference updates from develop * Brings VOL plugin loading changes from develop * Brings event sets from develop * Brings async functions over * Tools changes * Brings over many tools changes from develop * Brings VOL flags from develop * Fixes h5dump double/float tests * Updates h5repack tests * Brings h5diff test changes from develop * Last h5dump changes * Brings test changes from develop * Committing clang-format changes * Tidied h5_testing() * Brings chunk iteration code + misc from develop * Updates vds test * Enables external link parallel test * Brings updated property lists from develop * H5G changes from develop * H5MF cleanup * Brings vfd_swmr test back into CMake * Updates threadsafe test * Updates plist test * Brings recent changes from develop * Require a C++11 compiler to build the C++ wrappers (#693) * Committing clang-format changes * Requires a C++11 compiler to build the C++ wrappers Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Fix H5FD_mpio_Debug="rw" can report MPI_count instead of bytes (#699) * Removes pre-C99 build and header cruft (#700) * Assumes ANSI C headers exist * Assumes stdbool.h, stdint.h, and inttypes.h are present * Assumes the C++ compiler can handle stdint.h * Removes all work-arounds for missing functionality, especially stdbool.h Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Updates release documents * Brings parallel changes from develop * Adds a VFD/parallel check program for the VFD SWMR shell test * Updates MANIFEST * Disable building VFD SWMR acceptance tests on CMake * Removes err.h from genall5.c Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Normalization with develop (#704)Dana Robinson2021-05-282-25/+0
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* Much normalization with develop (#701)Dana Robinson2021-05-2871-3260/+4873
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Brings CMake updates from develop * Brings reduction in pedantic casts from develop * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Formatted source * Bring over some VOL registration changes * VOL cleanup * H5VL_request_status_t substitutions * H5F.c cleanup * Minor API tweaks from develop * Moves H5G package init/teardown to H5Gint.c * H5G cleanup * H5M cleanup * H5SM cleanup * H5T cleanup * H5R cleanup * H5Lpublic.h cleanup * H5L cleanup * H5O cleanup * H5A, H5CS, and H5AC cleanup * Moved H5A init/teardown code to H5Aint.c * Moves H5D I/O functions to H5D.c * H5D cleanup * Misc minor cleanup * H5P close cleanup * H5Tpublic.h cleanup * Fixes err_compat test * H5PLpublic.h cleanup * Updates H5Ppublic.h * H5Fpublic.h updates * H5A.c cleanup * Brings over H5Aexists and related changes * Brings CMake shell testing changes from develop * Close callback changes * H5R and H5Tcommit normalization * err_compat test works now * H5O tweaks * Updates VOL registration code * Brings over H5VL_create_object * H5Tconv.c reformatting * H5T.c tweaks * Brings datatype and reference updates from develop * Brings VOL plugin loading changes from develop * Brings event sets from develop * Brings async functions over * Tools changes * Brings over many tools changes from develop * Brings VOL flags from develop * Fixes h5dump double/float tests * Updates h5repack tests * Brings h5diff test changes from develop * Last h5dump changes * Brings test changes from develop * Committing clang-format changes * Tidied h5_testing() * Brings chunk iteration code + misc from develop * Updates vds test * Enables external link parallel test * Brings updated property lists from develop * H5G changes from develop * H5MF cleanup * Brings vfd_swmr test back into CMake * Updates threadsafe test * Updates plist test * Brings recent changes from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Committing clang-format changesgithub-actions2021-05-211-2/+2
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* use TEST_ERROR when possibleMuqun Yang2021-05-211-649/+236
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* Merge remote-tracking branch 'upstream/feature/vfd_swmr' into feature/vfd_swmrMuqun Yang2021-05-2185-2567/+4423
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| * Merge pull request #626 from vchoi-hdfgroup/dsetops_feature_vfd_swmrvchoi-hdfgroup2021-05-203-7/+1900
| |\ | | | | | | Dsetops feature vfd swmr
| | * Committing clang-format changesgithub-actions2021-05-191-18/+15
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| | * Merge branch 'dsetops_feature_vfd_swmr' of ↵vchoi2021-05-191-5/+5
| | |\ | | | | | | | | | | | | https://github.com/vchoi-hdfgroup/hdf5 into dsetops_feature_vfd_swmr
| | | * Committing clang-format changesgithub-actions2021-05-101-5/+5
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| | * | Address feedback from PR review:vchoi2021-05-191-161/+228
| | |/ | | | | | | | | | | | | 1) Remove unnecessary header files 2) Move coding from main() to subroutines
| | * Merge branch 'dsetops_feature_vfd_swmr' of ↵vchoi2021-05-101-477/+489
| | |\ | | | | | | | | | | | | https://github.com/vchoi-hdfgroup/hdf5 into dsetops_feature_vfd_swmr
| | | * Committing clang-format changesgithub-actions2021-05-041-490/+502
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| | * | Modifications based on PR feedback plus some cleaning up.vchoi2021-05-091-31/+30
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| | * Add new test vfd_swmr_dsetops_writer.c to test writing operations for:vchoi2021-05-043-7/+1825
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Dataset types: --dataset with compact layout --dataset with contiguous layout --datasets with chunked layout: single/implicit/fixed array/extensible array/btree2 indexes Types of writes: --Sequential writes --Random writes --Regular hyperslab writes --Raw data modifications
| * | Updates the VOL structDana Robinson2021-05-083-5/+7
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| * | Brings missing error stack append test from developDana Robinson2021-05-081-0/+121
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| * | Misc H5VL updates from developDana Robinson2021-05-081-2/+2
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| * | Brings optional filters from developDana Robinson2021-05-071-0/+112
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| * | Normalization of dataspace code + reorg of public dataset callsDana Robinson2021-05-071-0/+197
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| * | Brings hash table IDs from developDana Robinson2021-05-072-11/+14
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| * | Misc normalization from developDana Robinson2021-05-071-2/+2
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| * | Brings H5Z and many test changes from developDana Robinson2021-05-0762-1680/+1585
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| * | Brings much of the printf changes over from developDana Robinson2021-05-066-115/+1
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| * | Brings native H5Fdelete implementation from developDana Robinson2021-05-053-213/+240
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| * | Brings atom-->ID and other ID-related changes from developDana Robinson2021-05-051-139/+243
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| * | Removes dead H5ST codeDana Robinson2021-05-035-395/+1
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* | Committing clang-format changesgithub-actions2021-05-191-105/+104
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* | Merge branch 'feature/vfd_swmr' of https://github.com/kyang2014/hdf5 into ↵Muqun Yang2021-05-191-700/+778
|\ \ | | | | | | | | | feature/vfd_swmr
| * | Committing clang-format changesgithub-actions2021-05-061-758/+837
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* | | Add the object header continuation block tests.Muqun Yang2021-05-192-9/+276
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* | Merge remote-tracking branch 'upstream/feature/vfd_swmr' into feature/vfd_swmrMuqun Yang2021-05-0687-2444/+2914
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| * Committing clang-format changesgithub-actions2021-05-037-1625/+1765
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| * Brings more develop code over, especially DoxygenDana Robinson2021-05-0312-126/+181
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| * Fixes issue in vfd_swmr_attrdset_writer.cDana Robinson2021-05-032-51/+51
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| * Many small changes from develop. Should allows running VFD SWMRDana Robinson2021-05-033-4/+7
| | | | | | | | tests from CMake.
| * Update top-level COPYING file and remove COPYING files from subdirectories ↵Dana Robinson2021-05-031-13/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (#561) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING (license) file. * Add release_docs/code-conventions.md file. * Add script to test h5py. * Fix script error. * Add file h5pytest.yml. * Test declaration of counter variables in for loops. * Committing clang-format changes * Committing clang-format changes * Added [] to line 126 of H5LTanalyze.l. Ran bin/genparser with flex v2.6.4 and Bison v3.0.4 on jelly. * Revert "Added [] to line 126 of H5LTanalyze.l." This reverts commit e4a9cee441efa75b16a8ee030c86189e186dd266. * Revert extra commits to match canonical develop. * Update top-level COPYING file and remove COPYING files from subdirectories. * Remove subdirectory COPYING files from MANIFEST. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * Merge remote-tracking branch 'canonical/feature/vfd_swmr' into ↵Dana Robinson2021-05-039-428/+5450
| |\ | | | | | | | | | vfd_swmr/thg_standards
| | * Disables attrdset tests while we investigate failuresDana Robinson2021-04-301-50/+51
| | | | | | | | | | | | Also switches bin/bash shebang to use env instead
| * | Merge remote-tracking branch 'canonical/feature/vfd_swmr' into ↵Dana Robinson2021-04-092-188/+414
| |\ \ | | | | | | | | | | | | vfd_swmr/thg_standards
| * | | Brings a lot of smaller changes from developDana Robinson2021-04-0936-337/+337
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| * | | Brings many CMake changes from developDana Robinson2021-04-084-33/+214
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| * | | Brings H5CX_pop() changes from developDana Robinson2021-04-0819-323/+275
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| * | | Brings thread-safety changes from developDana Robinson2021-04-074-36/+35
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| * | | Moves VFD and VOL make check targets to conclude.amDana Robinson2021-04-071-11/+0
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| * | | Better VFD SWMR parallel skip testDana Robinson2021-04-061-4/+7
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| * | | Brings H5RS changes from developDana Robinson2021-04-061-38/+208
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* | | | Add all the group operation tests. The tests include create_group,delete_group,Muqun Yang2021-05-062-139/+1387
| | | | | | | | | | | | | | | | | | | | move_group, insert_links, delete_links, link storage transition and old-styled group creation.
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