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* Merge branch 'feature/vfd_swmr' into multiDavid Young2020-08-212-0/+8
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| * Apply Dana's fix for production mode builds.David Young2020-08-212-0/+8
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* | Merge branch 'feature/vfd_swmr' into multiDavid Young2020-08-2114-22/+29
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| * Avoid potential shadow-file clashes, call the shadow file `group-shadow`.David Young2020-08-211-1/+1
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| * Call the shadow files bigset-shadow-<number> for some <number>,David Young2020-08-211-1/+1
| | | | | | | | to avoid unlikely shadow-file clashes.
| * Avoid potential shadow-file clashes, call the file `generator-shadow`.David Young2020-08-211-1/+1
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| * Use the safe calloc() idiom, p = calloc(1, sizeof(*p)), and doDavid Young2020-08-213-3/+3
| | | | | | | | not gratuitously cast to p's type.
| * Avoid potential shadow-file clashes, call the shadow file `rw-shadow`.David Young2020-08-217-7/+8
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| * Straggler from last: call the shadow file `vlstr-shadow`.David Young2020-08-211-1/+1
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| * Avoid shadow file clashes, call the file `vlstr-shadow`.David Young2020-08-211-1/+1
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| * To avoid potential clashes with other tests, call the shadow file `zoo-shadow`.David Young2020-08-211-1/+1
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| * Derive the name of the shadow file from the HDF5 file: drop the .h5, addDavid Young2020-08-211-6/+12
| | | | | | | | .shadow.
* | Merge branch 'feature/vfd_swmr' into multiDavid Young2020-08-181-2/+6
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| * Sleep 1/10s between H5Dopen() tries. Make a couple of warning/error messagesDavid Young2020-08-181-2/+6
| | | | | | | | more clear/correct.
* | Merge branch 'feature/vfd_swmr' into multiDavid Young2020-08-181-5/+49
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| * Perform the dataset opens in reverse order to their creation, and ifDavid Young2020-08-181-5/+49
| | | | | | | | | | | | | | | | | | | | | | | | H5Dopen fails, rapidly retry up to 9,999 times. Log H5Dopen failures, but log no more than once every five seconds to avoid spamming the terminal. With these changes, it's easier for the reader to open the last dataset before the writer created it, but the reader recovers instead of quitting with an error. It should only be necessary to retry opening the *last* dataset; all previous datasets should open on one try if the last is open.
* | Merge branch 'feature/vfd_swmr' into multiDavid Young2020-08-172-10/+0
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| * Fix copy-and-paste error: do not copy the H5T_C_S1 type twice.David Young2020-08-172-10/+0
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* | Merge branch 'aug-merge-attempt/feature/vfd_swmr' into ↵David Young2020-08-0423-538/+1474
|\ \ | |/ | | | | aug-merge-attempt/may-merge-mainzer-to-mine
| * Merge branch 'aug-develop' into aug-merge-attempt/feature/vfd_swmrDavid Young2020-08-0423-538/+1474
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| | * Minor normalizations with 1.12 branchDana Robinson2020-08-013-6/+3
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| | * Minor normalizations with hdf5_1_10Dana Robinson2020-07-319-414/+331
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| | * Fixed additional typos in tselect.c comments.Dana Robinson2020-07-281-2/+2
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| | * Fixes typo in tselect.cDana Robinson2020-07-281-1/+1
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| | * Updates H5Sset_extent_none() to set H5S_NULLDana Robinson2020-07-281-2/+78
| | | | | | | | | | | | | | | | | | | | | | | | The API call used to set the internal H5S_NO_CLASS value which produced errors when such a dataspace was passed to many other API calls. Fixes HDFFV-11027
| | * Merge pull request #2693 in HDFFV/hdf5 from ↵Vailin Choi2020-07-175-1/+181
| | |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-11080-heap-use-after-free-by-the-call to develop * commit '3023b34272cc6ada84aebfa7441a6a55afa3621c': Update MANIFEST. Add new test to Cmake. Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
| | | * Update MANIFEST.vchoi2020-07-161-0/+1
| | | | | | | | | | | | | | | | Add new test to Cmake.
| | | * Fix for jira issue HDFFV-11080:vchoi2020-07-144-1/+180
| | | | | | | | | | | | | | | | | | | | (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
| | * | H5R: fix type conversion of references within vlen typeJerome Soumagne2020-07-161-0/+270
| | |/ | | | | | | | | | Update trefer.c with vlen test case
| | * Add new source files to CMake buildQuincey Koziol2020-06-281-0/+1
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| | * Clean up warningsQuincey Koziol2020-06-281-21/+20
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| | * Merge remote-tracking branch 'origin/develop' into monotonic_timerQuincey Koziol2020-06-273-54/+134
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| | | * * Fix intermittent error with Splitter VFD.Jacob Smith2020-06-253-54/+134
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Mismatch in time of test file creation was creating false negatives. Add file-duplication routine: `h5_duplicate_file_by_bytes()`. * Change library calls in `h5test.c:h5_compare_file_bytes()` to their HD-prefixed equivalents.
| | * | Merge remote-tracking branch 'origin/develop' into monotonic_timerQuincey Koziol2020-06-26226-49539/+88368
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| | | * Merge pull request #2615 in HDFFV/hdf5 from ↵Jake Smith2020-06-151-1/+2
| | | |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:bugfix/splitter_valgrind_patch to develop * commit '6462c67b6578e48c1ef6d847be59c0b5e3598a50': Patch a few holes in the Splitter VFD implementation.
| | | | * Patch a few holes in the Splitter VFD implementation.Jacob Smith2020-05-291-1/+2
| | | | | | | | | | | | | | | | | | | | | | | | | * Missing logfile close on driver-open failure. * Initialize empty string in test/vfd (logfile path in W/O compat check).
| | | * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Larry Knox2020-06-071-7/+7
| | | |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'aa338c3a87a4544ccb164832422e3e2462a57b88': Detect when there's the same-shaped selection of a single block of elements on both selections, but with different selection types (i.e. one selection defined as an 'all' type and the other as a hyperslab or point type), without falling into the generic selection iteration case. Normalization of H5T.c with 1.10. Normalization of H5D.c with 1.10.
| | | | * | Detect when there's the same-shaped selection of a single block of elements onQuincey Koziol2020-06-051-7/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | both selections, but with different selection types (i.e. one selection defined as an 'all' type and the other as a hyperslab or point type), without falling into the generic selection iteration case.
| | | * | | Add flags from config/clang-warnings/*general files to H5 C and CXX flags ↵Larry Knox2020-06-061-3/+3
| | | |/ / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | for all versions of Clang and Clang++ compilers. Switched from cut to awk in testcheck_version.sh.in to avoid dependence on tab vs. " " in version definitions in H5public.h.
| | | * | Normalizations with 1.10 branch.Dana Robinson2020-06-021-4/+4
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| | | * Minor tweaks to testhdf5 code after normalization with 1.10.Dana Robinson2020-05-282-45/+45
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| | | * Misc warning fixes.Dana Robinson2020-05-104-18/+39
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| | | * Align contents of CMake and autotools testfile cleanup lists.Quincey Koziol2020-05-032-90/+49
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| | | * Avoid allocating a chunk index for datasets with 0-sized dimensions, untilQuincey Koziol2020-05-012-20/+214
| | | | | | | | | | | | | | | | the dataset is extended.
| | | * Merge pull request #2541 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-04-271-0/+59
| | | |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit 'c03ee563f46013d22f36a1895664a9ba876558e9': Further updates to the tools warnings fixes from code review. Updates to tools warning PR from code review. Fixes for warnings in the tools code.
| | | | * Updates to tools warning PR from code review.Dana Robinson2020-04-261-4/+4
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| | | | * Fixes for warnings in the tools code.Dana Robinson2020-04-251-0/+59
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| | | * | For compatibility with non-C99 Visual Studio versions, use "%" PRIuMAXDavid Young2020-04-241-2/+2
| | | | | | | | | | | | | | | | | | | | instead of "%ju".
| | | * | Fix `test/swmr_sparse_reader.c:118:77: error: cast from pointerDavid Young2020-04-241-2/+2
| | | |/ | | | | | | | | | | | | | | | | | | | | | | | | to integer of different size [-Werror=pointer-to-int-cast]` and `test/snapshots-hdf5/current/test/swmr_sparse_reader.c:129:100: error: cast from pointer to integer of different size [-Werror=pointer-to-int-cast]`.
| | | * Trim trailing whitespaceQuincey Koziol2020-04-2067-517/+517
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