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* Removed most C library include lines from testsDana Robinson2021-03-028-13/+0
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* Fix unfreed memory after fork in vfd_swmr testDana Robinson2021-03-021-0/+12
| | | | | The writer configuration in the vfd_swmr test was not freed in the child process after a call to fork() causing a memory leak.
* Corrected a typo in the comment.songyulu2021-02-151-1/+1
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* Added some comments.songyulu2021-02-121-1/+4
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* Adding the test case for fixed-array chunked dataset and VDS.songyulu2021-02-122-6/+26
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* (1) Add new routine to configure for VFD SWMR: init_vfd_swmr_config()vchoi2021-02-0216-311/+177
| | | | | | (2) Revise routine to setup fapl for VFD SWMR legacy and other integration tests: vfd_swmr_create_fapl() (3) Update all VFD SWMR integration tests to use the above two routines (4) Clean up VFD SWMR legacy tests: turn on compression in test script, remove #ifdef OUT H5Fflush(), message file name
* Updates CMake files to work with VFD SWMRDana Robinson2020-10-142-4/+20
| | | | | | | | | | | - CMake files were updated to build new files in src and test. - As with legacy SWMR, the test programs that are run via shell scripts are built but not run. - Updated whitespace in the links_env output file. It's unclear why this changed, but CMake does an exact diff on the file whereas the autotools do not.
* Merge branch 'vswmr-base' into quiet-zooDavid Young2020-09-179-63/+115
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| * Limit the repeat rate for duplicate zoo warnings to once every fiveDavid Young2020-09-176-32/+54
| | | | | | | | seconds.
| * Move below_speed_limit() from vfd_swmr_bigset_writer.c toDavid Young2020-09-173-24/+39
| | | | | | | | vfd_swmr_common.c, document it, and fix a bug.
| * Document some of the functions in here. Update the comment at the topDavid Young2020-09-171-7/+22
| | | | | | | | of the file. NFCI.
| * Fixes a leak of the metadata index memoryDana Robinson2020-09-141-5/+9
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* | Merge branch 'feature/vfd_swmr' into multiDavid Young2020-09-141-25/+27
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| * Rewrap lines.David Young2020-09-031-25/+27
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* | Merge pull request #1 in ~DYOUNG/vchoi_fork from ↵Dana Robinson2020-09-091-5/+9
|\ \ | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:svd_multi_memory_fix to multi * commit '09981b58d800d784a2aa7e3ea5f7f1cad576e8db': Fixes a leak of the metadata index memory
| * | Fixes a leak of the metadata index memoryDana Robinson2020-09-081-5/+9
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* | | Merge branch 'feature/vfd_swmr' into multiDavid Young2020-09-031-6/+98
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| * Individually track the steps verified on each dataset. Take careDavid Young2020-09-031-5/+19
| | | | | | | | not to skip a step.
| * Give an overview of the bigsets test in a mega-comment at the top. Also,David Young2020-09-031-1/+79
| | | | | | | | | | describe the test pattern. And while I'm here, repair a comment, s/writer/reader/.
* | Merge branch 'feature/vfd_swmr' into multiDavid Young2020-08-251-3/+4
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| * Use the terminology "expected" and "unexpected" errors instead of "soft" andDavid Young2020-08-251-3/+4
| | | | | | | | "hard" errors.
* | Merge branch 'feature/vfd_swmr' into multiDavid Young2020-08-212-0/+8
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| * Apply Dana's fix for production mode builds.David Young2020-08-212-0/+8
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* | Merge branch 'feature/vfd_swmr' into multiDavid Young2020-08-2114-22/+29
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| * Avoid potential shadow-file clashes, call the shadow file `group-shadow`.David Young2020-08-211-1/+1
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| * Call the shadow files bigset-shadow-<number> for some <number>,David Young2020-08-211-1/+1
| | | | | | | | to avoid unlikely shadow-file clashes.
| * Avoid potential shadow-file clashes, call the file `generator-shadow`.David Young2020-08-211-1/+1
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| * Use the safe calloc() idiom, p = calloc(1, sizeof(*p)), and doDavid Young2020-08-213-3/+3
| | | | | | | | not gratuitously cast to p's type.
| * Avoid potential shadow-file clashes, call the shadow file `rw-shadow`.David Young2020-08-217-7/+8
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| * Straggler from last: call the shadow file `vlstr-shadow`.David Young2020-08-211-1/+1
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| * Avoid shadow file clashes, call the file `vlstr-shadow`.David Young2020-08-211-1/+1
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| * To avoid potential clashes with other tests, call the shadow file `zoo-shadow`.David Young2020-08-211-1/+1
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| * Derive the name of the shadow file from the HDF5 file: drop the .h5, addDavid Young2020-08-211-6/+12
| | | | | | | | .shadow.
* | Merge branch 'feature/vfd_swmr' into multiDavid Young2020-08-181-2/+6
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| * Sleep 1/10s between H5Dopen() tries. Make a couple of warning/error messagesDavid Young2020-08-181-2/+6
| | | | | | | | more clear/correct.
* | Merge branch 'feature/vfd_swmr' into multiDavid Young2020-08-181-5/+49
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| * Perform the dataset opens in reverse order to their creation, and ifDavid Young2020-08-181-5/+49
| | | | | | | | | | | | | | | | | | | | | | | | H5Dopen fails, rapidly retry up to 9,999 times. Log H5Dopen failures, but log no more than once every five seconds to avoid spamming the terminal. With these changes, it's easier for the reader to open the last dataset before the writer created it, but the reader recovers instead of quitting with an error. It should only be necessary to retry opening the *last* dataset; all previous datasets should open on one try if the last is open.
* | Merge branch 'feature/vfd_swmr' into multiDavid Young2020-08-172-10/+0
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| * Fix copy-and-paste error: do not copy the H5T_C_S1 type twice.David Young2020-08-172-10/+0
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* | Merge branch 'aug-merge-attempt/feature/vfd_swmr' into ↵David Young2020-08-0423-538/+1474
|\ \ | |/ | | | | aug-merge-attempt/may-merge-mainzer-to-mine
| * Merge branch 'aug-develop' into aug-merge-attempt/feature/vfd_swmrDavid Young2020-08-0423-538/+1474
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| | * Minor normalizations with 1.12 branchDana Robinson2020-08-013-6/+3
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| | * Minor normalizations with hdf5_1_10Dana Robinson2020-07-319-414/+331
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| | * Fixed additional typos in tselect.c comments.Dana Robinson2020-07-281-2/+2
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| | * Fixes typo in tselect.cDana Robinson2020-07-281-1/+1
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| | * Updates H5Sset_extent_none() to set H5S_NULLDana Robinson2020-07-281-2/+78
| | | | | | | | | | | | | | | | | | | | | | | | The API call used to set the internal H5S_NO_CLASS value which produced errors when such a dataspace was passed to many other API calls. Fixes HDFFV-11027
| | * Merge pull request #2693 in HDFFV/hdf5 from ↵Vailin Choi2020-07-175-1/+181
| | |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-11080-heap-use-after-free-by-the-call to develop * commit '3023b34272cc6ada84aebfa7441a6a55afa3621c': Update MANIFEST. Add new test to Cmake. Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
| | | * Update MANIFEST.vchoi2020-07-161-0/+1
| | | | | | | | | | | | | | | | Add new test to Cmake.
| | | * Fix for jira issue HDFFV-11080:vchoi2020-07-144-1/+180
| | | | | | | | | | | | | | | | | | | | (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
| | * | H5R: fix type conversion of references within vlen typeJerome Soumagne2020-07-161-0/+270
| | |/ | | | | | | | | | Update trefer.c with vlen test case
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