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* Merge branch 'develop' of ↵Jacob Smith2019-09-23103-23597/+30790
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into bugfix/repack_external_storage
| * HDFFV-10740 - skip copying dirs in for loopsAllen Byrne2019-09-184-26/+54
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| * Fixed some exit calls.Dana Robinson2019-09-0728-168/+140
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| * Reworked the previously refactorred code.Binh-Minh Ribler2019-09-051-150/+161
| | | | | | | | | | | | | | Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
| * Merge branch 'develop' of ↵Binh-Minh Ribler2019-09-043-9/+22
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5-bmr into develop
| | * Fix CMake build of test needing compression libsAllen Byrne2019-09-031-1/+14
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| | * Merge pull request #1908 in HDFFV/hdf5 from ~BMRIBLER/hdf5-bmr:develop to ↵Binh-Minh Ribler2019-09-033-3/+1968
| | |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop - Added new chunk query functions: H5Dget_num_chunks(), H5Dget_chunk_info(), and H5Dget_chunk_info_by_coord() - Fixed iterator issue in H5EA_iterate(), H5FA_iterate(), and H5D__none_idx_iterate() * commit '96dab622e3bbe75d85b0cef3ca2bd5288cf4ac32': Fixed error code and error messages Tested on Jelly (very minor) Changed H5VL_NATIVE_DATASET_GET_CHUNK_INFO_BY_COOR to H5VL_NATIVE_DATASET_GET_CHUNK_INFO_BY_COORD per a review comment. Updated comments Updated based on reviews and refactored test code Code cleanup and refactor Re-ordered items w.r.t. date. Fixed typo Added notes about HDFFV-10677 and HDFFV-10661 HDFFV-10677 and HDFFV-10661
| | * | Fix EXISTS test syntaxAllen Byrne2019-08-291-7/+7
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| | * | fix get gethostname for windowsAllen Byrne2019-08-281-1/+1
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| * | | Improvement of test codeBinh-Minh Ribler2019-09-041-10/+21
| | |/ | |/| | | | | | | | | | | | | | | | | | | | | | Description: Fixed tests to handle the case when a requested compression filter is not available. Platform tested Linux/64 (jelly) Darwin (osx1011test)
| * | Fixed error code and error messagesBinh-Minh Ribler2019-09-031-26/+26
| | | | | | | | | | | | Tested on Jelly (very minor)
| * | Updated commentsBinh-Minh Ribler2019-09-011-1/+9
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| * | Updated based on reviews and refactored test codeBinh-Minh Ribler2019-09-011-769/+809
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| * | Code cleanup and refactorBinh-Minh Ribler2019-08-291-68/+47
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| * | HDFFV-10677 and HDFFV-10661Binh-Minh Ribler2019-08-283-3/+1941
| |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Added functions to query chunk information: H5Dget_num_chunks(dset_id, fspace_id, *nchunks) Gets the number of written chunks that intersect with the given dataspace. However, in this version, the intersection is not yet completed. Thus, the number of all written chunks will be returned. H5Dget_chunk_info_by_coord(dset_id, *offset, *filter_mask, *addr, *size) Given a chunk's logical coordinates, returns the chunk's filter, address, and size. H5Dget_chunk_info(dset_id, fspace_id, index, *offset, *filter_mask, *addr, *size) Given a chunk's index, returns the chunk's logical coordinates, filter, address, and size. The chunk belongs to a set of chunks that have nonempty intersection with the specified dataspace. However, in this version, the intersection is not yet completed, and the index is of all the written chunks. These functions comply with VOL. - Fixed some oversights found in the library for the tests in chunk_info.c to work correctly. The returned value from a callback function was not checked in H5EA_iterate(), H5FA_iterate(), and H5D__none_idx_iterate(). This oversight caused a callback function to continue iterating even though it's supposed to stop. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
| * OESS-29 Update HD prefix mostlyAllen Byrne2019-08-2412-276/+256
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| * Merge branch 'develop' into shared_file_ptrQuincey Koziol2019-08-2160-17385/+17202
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| | * Untangle #ifdef mess in ROS3 code.Dana Robinson2019-08-203-239/+56
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| | * Add missing HD prefixAllen Byrne2019-08-181-121/+121
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| | * Update HD prefix and reconcile hl/cpp testAllen Byrne2019-08-161-1/+1
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| | * Add HD prefix to testsAllen Byrne2019-08-1559-17141/+17141
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| * | Begin converting the H5MF interface to use shared file pointers insteadQuincey Koziol2019-08-211-21/+18
| | | | | | | | | | | | of top file pointers.
| * | Rest of changes for 'top' file pointer to 'shared' file pointer for H5F__accumQuincey Koziol2019-08-191-1/+1
| | | | | | | | | | | | routines.
| * | Partial H5F__accum_* routines.Quincey Koziol2019-08-191-2/+2
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| * Correct name of folderAllen Byrne2019-08-151-1/+1
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| * Mostly whitespace in testpar, addl changes for tmp dirAllen Byrne2019-08-156-151/+152
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| * Merge pull request #1872 in HDFFV/hdf5 from ↵Jake Smith2019-08-143-461/+367
| |\ | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:bugfix/ros3_hdfs_warns_squashed to develop * commit '2e5cd3d2b2d953420252c80ab5e32ac95ac0c5b3': Fix compiler warnings with diabled ROS3 and HDFS VFDs. Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example.
| | * Fix compiler warnings with diabled ROS3 and HDFS VFDs.Jacob Smith2019-08-143-461/+367
| | | | | | | | | | | | | | | | | | Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example.
| * | Merge pull request #1871 in HDFFV/hdf5 from ↵Ray Lu2019-08-144-5/+5
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:bugfix/directory_name_develop to develop * commit '0b868668bac0d268120844adb9ad216a9a8e1395': Changed the directory name left out from the previous commit. Changed the name of the temporary directory from 'tmp' to a special name to avoid possible conflicts.
| | * | Changed the directory name left out from the previous commit.Songyu Lu2019-08-141-1/+1
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| | * | Changed the name of the temporary directory from 'tmp' to a special name to ↵Songyu Lu2019-08-144-4/+4
| | |/ | | | | | | | | | avoid possible conflicts.
| * | HDFFV-10879 fix test varnameAllen Byrne2019-08-141-1/+1
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| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-08-133-1/+19
| |\ | | | | | | | | | | | | | | | | | | | | | | | | * commit 'aeb145428f5e6bc51742fff031b0cf8cf6fbefbb': Updated h5trav.c to emit output that doesn't require ddl changes for map support. Fixed Map API CMake option Renamed H5Mdelete_key to H5Mdelete and H5Mset to H5Mput. Added ifdef for intel compilers, __GNUC__ has to be defined for header files which use it to work with intel compilers. This gives a warning for intel compiler about fallthrough, so added a check not to include fallthrough if using intel compilers. Added the map (H5M) API
| | * Added the map (H5M) APIDana Robinson2019-08-133-1/+19
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| * | Remove old codeAllen Byrne2019-08-131-5/+0
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| * | Correct error test spelling and useAllen Byrne2019-08-133-103/+136
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| * HDFFV-10879 fix reference fileAllen Byrne2019-08-121-1/+1
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| * Add option to explicitly disable extra testsAllen Byrne2019-08-071-0/+2
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| * Cleanup HD prefixAllen Byrne2019-08-053-909/+557
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| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-08-053-680/+762
| |\ | | | | | | | | | | | | | | | | | | * commit '5fe1216a4e6af8feef0551f7bece8a0e193310a9': Fix return type for H5Sselect_intersect_block(). Updated H5TRACE macro. Add H5Sselect_shape_same and H5Sselect_intersect_block API routines, along with tests and minor cleanups and refactorings.
| | * Merge pull request #1819 in HDFFV/hdf5 from ~KOZIOL/hdf5:develop to developQuincey Koziol2019-08-043-680/+762
| | |\ | | | | | | | | | | | | | | | | | | | | | | | | * commit '905d40aa6f6eb603c5507e7967130760e3a2e43c': Fix return type for H5Sselect_intersect_block(). Updated H5TRACE macro. Add H5Sselect_shape_same and H5Sselect_intersect_block API routines, along with tests and minor cleanups and refactorings.
| | | * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~koziol/hdf5 ↵Quincey Koziol2019-07-307-21/+6835
| | | |\ | | | | | | | | | | | | | | | into develop
| | | * | Add H5Sselect_shape_same and H5Sselect_intersect_block API routines, alongQuincey Koziol2019-07-303-680/+762
| | | | | | | | | | | | | | | | | | | | with tests and minor cleanups and refactorings.
| * | | | Merge reconciliation and VFD test fixesAllen Byrne2019-08-047-310/+306
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| * | | Fix VFD tests and repackAllen Byrne2019-08-031-1/+0
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| * | | Fix conflicting types for reset_raw_data_files() parameter in ↵Larry Knox2019-08-013-8/+8
| | | | | | | | | | | | | | | | | | | | | | | | external_common.c changed from int to hbool_t. Change 0 and 1 to FALSE and TRUE in calls to reset_raw_data_files().
| * | | Fix missing export tagAllen Byrne2019-07-311-2/+10
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| * | | Mostly whitespace cleanup and consistent test formatAllen Byrne2019-07-311-2413/+1407
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| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-07-311-1/+1
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | * commit '363217073750d07e0eeb0aac2b404a799fda9f7a': Update COPYING file. Remove hdfs from list of vfds for check-vfd testing as it is read-only. Fixed the MANIFEST
| | * | | Update COPYING file.Larry Knox2019-07-301-1/+1
| | | |/ | | |/| | | | | | | | | Remove hdfs from list of vfds for check-vfd testing as it is read-only.
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