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* [svn-r29836] Revert whitespace and non-critical changes for patch.Allen Byrne2016-04-2910-8348/+8342
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* [svn-r29754] HDFFV-9770: one more Windows change.Allen Byrne2016-04-202-221/+221
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* [svn-r29753] HDFFV-9770: Fix Windows compile errors.Allen Byrne2016-04-2015-8033/+8107
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* [svn-r29748] HDFFV-9770: Fix h5watch and CMake for HL.Allen Byrne2016-04-194-692/+708
| | | | Convert CMake sources tags from _SRCS to _SOURCES(closer match to Makefile).
* [svn-r29694] HDFFV-9756,9766,9719:Allen Byrne2016-04-141-0/+13
| | | | | | 9756-fix h5diff VDS 9766-fix h5repack VDS 9719 - reconcile tools differences
* [svn-r29426] Add tbogus.h5.copy to list of files to be deleted by make clean.Larry Knox2016-03-152-3/+3
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* [svn-r29425] Ohdr test now writes to tbogus.h5 which is in the HDF5 source ↵Larry Knox2016-03-151-2/+12
| | | | code. Make a local copy of the tbogus.h5 file to avoid writing to source files from a separate build directory (See HDFFV-9713).
* [svn-r29422] Merge of r29421 from trunk. Fixes HDFFV-9516.Dana Robinson2016-03-154-21/+270
| | | | Tested on: jam
* [svn-r29381] Re-ran autogen.sh on THG machines to update autotools outputDana Robinson2016-03-091-0/+1
| | | | | | | | files. Added java Makefile.in files. Tested on: jam
*-. [svn-r29378] Bring alpha2 in line with revise_chunks (up to r29365)Dana Robinson2016-03-0924-1756/+2394
|\ \ | | | | | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ C++ and Fortran autotools parallel w/ Fortran CMake serial w/ C++ and Fortran
| | * [svn-r29072] test/gheap stack size cleanup.Dana Robinson2016-02-092-42/+131
| | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial autotools (also w/ Valgrind)
| | * [svn-r29069] test/gheap cleanup prior to stack size fixes.Dana Robinson2016-02-091-306/+285
| | | | | | | | | | | | Tested on: Linux VM (minor changes)
| | * [svn-r29057] added dxpl type checking when debug mode is enabled ↵Mohamad Chaarawi2016-02-0713-1009/+1008
| | | | | | | | | | | | | | | | | | (H5_DEBUG_BUILD) tested on bb-8 with Serial and Parallel, debug and production builds.
| | * [svn-r29043] Fixes to make relative external storage work on Windows. Part ↵Dana Robinson2016-02-041-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | of HDFFV-8740. - Fixed typo in Wsetenv(). - Changed HDoff_t back to off_t in test/external.c. The function signature is off_t so the types must match or you can get conversion errors. Tested on 64-bit Windows 10 w/ VS 2015
| | * [svn-r29041] Patch from Steffen Kiess that allows a relative path to be ↵Dana Robinson2016-02-042-89/+648
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | specified for external dataset files set via H5Pset_external(). Resolves HDFFV-8740 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial
| | * [svn-r29035] Removed external links test from external storage test.Dana Robinson2016-02-023-108/+1
| | | | | | | | | | | | | | | | | | | | | | | | This test is duplicated more comprehensively in the links.c file so there is no need to copy it over. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial autotools
| | * [svn-r29034] Update the external test to use the default and latest file format.Dana Robinson2016-02-021-28/+60
| | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial autotools
| | * [svn-r29030] Cleanup of test/externals before merging user patch.Dana Robinson2016-02-021-541/+593
| | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial autotools
| | * [svn-r28972] Removed option to clear file buffers from autotools, CMake, and ↵Dana Robinson2016-01-261-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | library. Buffers that will be written to disk will now always be cleared since not doing this has huge security implications. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0, x86_64) gcc 5.2.1 serial autotools parallel autotools (MPICH 3.1.4) serial CMake
| | * [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-7/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
| | * [svn-r28861] Minor warning format string fix (HDFFV-9640).Dana Robinson2016-01-121-2/+2
| | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools parallel only (MPICH 3.1.4)
| | * [svn-r28843] Description:Quincey Koziol2016-01-081-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | Bump number of records for random update test again. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| | * [svn-r28837] Merged r28836 from revise_chunks (tarray.c fix).Dana Robinson2016-01-071-4/+4
| | | | | | | | | | | | Tested on ostrich w/ gcc
| | * [svn-r28828] Description:Quincey Koziol2016-01-061-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Switch filter plugin to use H5allocate_memory and H5free_memory instead of malloc and free. Tested on: Linux/32 2.6.x (jam) w/serial Linux/64 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
| | * [svn-r28821] Merge of r28816 from revise_chunks (tarray.c cleanup).Dana Robinson2016-01-061-84/+84
| | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| | * [svn-r28792] Added cleanup for new test files to tfile.c.Dana Robinson2016-01-041-0/+2
| | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| | * [svn-r28765] Description:Quincey Koziol2016-01-021-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | Bump the nunmber of v2 B-tree records for the random 4-level B-tree update test by another 25,000 records. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (Too minor to require h5committest)
| | * [svn-r28761] Description:Quincey Koziol2016-01-018-63/+288
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clean up many mismatches between malloc/free and H5MM_malloc/H5MM_xfree in the library and tests (and use of H5free_memory and H5Dvlen_reclaim). Also make H5Ocopy use a private version of H5Lexists, which doesn't internally throw (and suppress) errors when an object (or the path to it) isn't found in the destination. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| | * [svn-r28759] Description:Quincey Koziol2015-12-311-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | Bump number of records for level 4 update test, to cut down on number of random failures. Tested on: None - trivial
| | * [svn-r28748] Description:Quincey Koziol2015-12-301-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | Bump number of records for level 4 B-tree test, so that it's more likely to always get to level 4. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| | * [svn-r28742] Description:Quincey Koziol2015-12-291-187/+2439
| | | | | | | | | | | | | | | | | | | | | | | | | | | Add 'update' operation to v2 B-trees, which will insert a new record, or modify an existing one, depending on if the record exists or not. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| | * [svn-r28710] Description:Quincey Koziol2015-12-195-105/+518
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r28708 from revise_chunks branch: Fix earray, farray and btree2 use of incorrect file pointer when two files are opened and used to access the data structure. Misc. minor code cleanups as well. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel h5committest forthcoming
| | * [svn-r28696] Minor normalization with revise_chunks.Dana Robinson2015-12-174-94/+97
| | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| | * [svn-r28678] Updated the cache_tagging test to correctly output tags inDana Robinson2015-12-161-62/+62
| | | | | | | | | | | | | | | | | | | | | the debug/verbose function. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * | [svn-r29356] Merge of r29350 from trunk.Dana Robinson2016-03-082-47/+36
| | | | | | | | | | | | | | | | | | | | | Revert of the h5check_version check-in in the trunk. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial
| * | [svn-r29345] Merge of r29326, 29340, 29341 from trunk.Dana Robinson2016-03-082-36/+47
| | | | | | | | | | | | | | | | | | | | | C++ and h5check_version changes. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ C++ and Fortran
| * | [svn-r29331] Merge of r29150 from trunkDana Robinson2016-03-081-42/+48
| | | | | | | | | | | | | | | | | | | | | segfault on corrupted file fix Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial
| * | [svn-r29299] Merge of r29202 (HDFFV-9697 fix) from trunk.Dana Robinson2016-03-073-255/+416
| | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran and C++
| * | [svn-r29297] Merge of r29182 and 29183 (fix for HDFFV-8740)Dana Robinson2016-03-073-174/+792
| | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran and C++
| * | [svn-r29291] Merge of r29226-29259 from trunk.Dana Robinson2016-03-061-13/+3
| | | | | | | | | | | | | | | | | | | | | Mostly java JNI + a few smaller merges. Tested on: h5committest.new jam w/ java
| * | [svn-r29282] Merge of r29081 from trunk (phdf5_metadata_opt branch merge)Dana Robinson2016-03-0615-1002/+1002
| | | | | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran & C++ autotools parallel (MPICH 3.1.4) w/ Fortran
| * | [svn-r29253] Merge of r29057 from trunk (dxpl checks in debug builds)Dana Robinson2016-03-0315-1256/+1083
| | | | | | | | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran and C++ autotools parallel (MPICH 3.1.4) w/ Fortran bin/cmakehdf5 (CMake 3.3.2)
* | | [svn-r29225] Re-ran autogen.sh on THG machines to update autotools outputDana Robinson2016-02-291-0/+1
| | | | | | | | | | | | | | | | | | files. Tested on: jam
* | | [svn-r29224] Brought alpha2 branch in sync with revise_chunks (up to r29219)Dana Robinson2016-02-2933-1373/+4474
|\ \ \ | |/ / | | | | | | | | | | | | | | | | | | | | | | | | | | | Note: generated autotools files are from a VM and not THG machines. These will be updated immediately after check-in. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran & C++ autotools parallel (MPICH 3.1.4) w/ Fortran CMake serial (cmakehdf5 w/ CMake 3.3.2)
| * | [svn-r29210] Merge of r28950 and 28957 from trunk Dana Robinson2016-02-252-9/+9
| | | | | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ Fortran & C++ autotools parallel (MPICH 3.1.4) w/ Fortran
| * | [svn-r29205] Merge from trunk:Dana Robinson2016-02-255-623/+909
| | | | | | | | | | | | | | | | | | | | | r28635, 28902, 29030, 29034, 29035, 29119, 29132, 29158 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (debug w/ C++ & Fortran)
| * | [svn-r29193] Added POSIX wrappers for a few SWMR test functions thatDana Robinson2016-02-2312-23/+23
| | | | | | | | | | | | | | | | | | | | | | | | were missed. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial CMake serial (build only)
| * | [svn-r29189] Updated CMake to build SWMR and SWMR VDS test files.Dana Robinson2016-02-2313-452/+501
| | | | | | | | | | | | | | | | | | | | | Many SWMR test files were updated to include h5test.h and use HD posix function wrappers so they will compile on Windows. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 & CMake 3.3.2 64-bit Windows 10 w/ VS 2015 Pro & CMake 3.3.1
| * | [svn-r29136] Added code to main routine of objcopy to close the FAPL fapl2John Mainzer2016-02-171-0/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | shortly before exit. This in turn hides the property list management failure that is otherwise expressed on library shutdown when run with either the split or multi file drivers. Needless to say, this is a bandaid. The actual cause of the problem must be found and dealt with. Tested on Jam -- serial/debug/check-vfd
| * | [svn-r29114] Updated test code of HDFFV-9672 to correct error exposed by John Mainzer2016-02-151-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | builds with the --with-default-api-version=v16 configure option. Tested on Mercury (serial/debug & serial/debug/v16_api) Jam (serial/debug) NOTE: In the serial/debug test on Mercury, I encountered the following assertion failure in testh5watch.sh: H5Fsfile.c:63: H5F_sfile_assert_num: Assertion `H5F_sfile_head_g == ((void *)0)' failed. As this was clearly unrelated to my change, I went ahead with the checkin.
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