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* Merge branch 'develop' of ↵lrknox2017-04-124-686/+956
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into hdf5_1_10_1
| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2017-04-111-2/+2
| |\ | | | | | | | | | | | | | | | * commit '2821b8bd768138db6b5f917a5b7325f878f8f7d0': Fix URL name DAILYTEST-250 change test props to reduce timeout
| | * DAILYTEST-250 change test props to reduce timeoutAllen Byrne2017-04-111-2/+2
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| * | Fix for H5Dset_extent test failure with extensive array indexing (HDFFV-9771)Vailin Choi2017-04-112-49/+31
| |/ | | | | | | | | 1) Calculate chunk index for extensive array index based on swizzled max chunks when unlim_dim > 0 2) Minor fixes to test/fheap.c that somehow were missed from last check in. See pull request #396 review comments.
| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2017-04-071-0/+1
| |\ | | | | | | | | | | | | | | | | | | * commit '4a05d27c6fcef81612e005b6f6429ab362247492': HDFFV-10143 add missing javadoc param Add missing test status Fix CMake regex commands
| | * Add missing test statusAllen Byrne2017-04-061-0/+1
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| * | Modify test/fheap.c to run with various file space strategies and/or page ↵Vailin Choi2017-04-051-301/+368
| |/ | | | | | | | | | | | | | | buffering Modify test/fheap.c to run with different combinations of file space strategies and page buffering only when ExpressMode is 0 (HDF5TestExpress is 0). Tested on ostrich, platypus, mayll, emu, osx1010test, quail, kite, kituo.
| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2017-04-051-8/+13
| |\ | | | | | | | | | | | | * commit '60bb3fd1108e2006a79b008d031a0f68a1e6b393': Re-enabled fixed array index testing in the test_random_rank4_vl() test in test/set_extent. This was fixed some time ago, but the test was never re-enabled for that index type.
| | * Re-enabled fixed array index testing in the test_random_rank4_vl() testDana Robinson2017-04-051-8/+13
| | | | | | | | | | | | | | | in test/set_extent. This was fixed some time ago, but the test was never re-enabled for that index type.
| * | Fix typo deletionAllen Byrne2017-04-041-2/+2
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| * | HDFFV-10143 clean up format and function returnAllen Byrne2017-04-041-348/+306
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| * | Update with checks for index boundsAllen Byrne2017-04-031-11/+14
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2017-04-032-14/+588
| |\ \ | | |/ | | | | | | | | | | | | | | | | | | | | | | | | * commit '2412158ed8326a3f3d62fbd947e470667d0b5951': Add new file COPYING_LBNL_HDF5. Revert "Clear hdf5 1.10 entries from RELEASE.txt in the develop branch. Entries" Add LBNL license file and modify COPYING file accordingly. Omnibus checkin for several relatively minor modifications: Clear hdf5 1.10 entries from RELEASE.txt in the develop branch. Entries in this branch version of RELEASE.txt should be intended for the future 1.12.0 release. Fix HDFFV-8089 Description: Some code within an "ifdef H5D_CHUNK_DEBUG" block was using outdated data structure but not caught because the case of H5D_CHUNK_DEBUG being defined was never tested. It was commented out. I defined H5D_CHUNK_DEBUG, tested, and commented out again. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
| * | HDFFV-10143 surround will fail with try blockAllen Byrne2017-03-301-1/+4
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| * | HDFFV-10143 typo cleanupAllen Byrne2017-03-301-4/+4
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| * | HDFFV-10143 typo removedAllen Byrne2017-03-301-1/+1
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| * | Fix code error and use H5PL_MAX_PATH_NUM in testAllen Byrne2017-03-301-13/+17
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| * | HDFFV-10143 Cleanup due to commentsAllen Byrne2017-03-301-7/+7
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| * | HDFFV-10143 remove debugging outputAllen Byrne2017-03-301-6/+0
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| * | HDFFV-10143 change h5PLget to use buffer like H5Iget_nameAllen Byrne2017-03-301-12/+41
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| * | HDFFV-10143 change put to replace and add constAllen Byrne2017-03-301-1/+1
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| * | HDFFV-10143 Fix initial issues from reviewAllen Byrne2017-03-301-60/+92
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| * | HDFFV-10143 add APIs to manipulate plugin path tableAllen Byrne2017-03-281-215/+407
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* | | Update text in COPYING files in subdirectories to match changes tolrknox2017-04-111-7/+4
| | | | | | | | | | | | | | | | | | | | | | | | copyright notices in source files. Update Copyright notices in acsite.m4 and bin/yodconfigure that were overlooked by chkcopyright. Remove broken and unnecessary urls from comments in hl/fortran/src/H5IMcc.c and hl/src/H5IM.c.
* | | Add Copyright headers to 90 files (mostly .cmake files) withoutlrknox2017-04-071-0/+11
| | | | | | | | | | | | Copyright headers.
* | | Add "Copyright by The HDF Group."" to copyright header.lrknox2017-04-072-0/+2
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* | | Change copyright headers to replace url referring to file to be removedlrknox2017-04-06170-1020/+680
| | | | | | | | | | | | | | | | | | | | | | | | and replace it with new url for COPYING file. Fix 2 lines in java error test expected output file where messages include line numbers changed by reducing the copyright header by 2 lines.
* | | Merge branch 'develop' into hdf5_1_10_1lrknox2017-03-312-14/+588
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| * | Omnibus checkin for several relatively minor modifications:mainzer2017-03-282-14/+588
| |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 1) Added code test/page_buffer.c to verify that page buffering is disabled in parallel builds. 2) Added code to test/cache_image.c to verify correct interaction between evict on close and cache image -- in particular management of a file containing a cache image containing dirty metadata that has been opened R/O. Also fix for the bug exposed. 3) Added code to testpar/t_cache_image.c to verify expected procedure for reading cache images, and also supporting stats collection code needed for the test. 4) Repair of an overactive sanity check in H5C__reconstruct_cache_contents(). 5) Other minor tidies in passing. Tested serial and parallel, debug and production on Jelly.
| * Run all scripts using signal files between processes in their own ↵lrknox2017-03-224-6/+83
| | | | | | | | directories to avoid accidental deletion of the signal files.
| * Run swmr tests in their own subdirectory of test to avoid signallrknox2017-03-171-0/+23
| | | | | | | | file deletion by other tests.
* | Switch maintainer mode off.lrknox2017-03-241-0/+3192
| | | | | | | | | | | | Update version to 1.10.1-pre1. Check in files generated by autogen.sh, and comment those out in .gitignore.
* | Merge pull request #358 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2017-03-224-6/+83
| | | | | | | | | | * commit '82183c7cdc50f9dc41ef8238c6a2bef6f1c7fcde': Run all scripts using signal files between processes in their own directories to avoid accidental deletion of the signal files.
* | CTestConfig.cmake:lrknox2017-03-171-0/+23
|/ | | | | | | | Report results to HDF5110 in buildbot and CDash. testswmr.sh.in: Run swmr tests in their own subdirectory of test to avoid signal file deletion by other tests.
* output_filter.sh:lrknox2017-03-151-5/+22
| | | | | | | | | | | | | | | | | | | | Comment added to address HDFFV-8270. The sample ontput in the file's comments are not up-to-date with the scripts in the file that remove output unique to certain systems when running test scripts. This output doesn't match expected output files for the tests, causing them to fail. Ther output_filter.sh file removes such output. Currently we don't have access to these systems to update the comments. testflushrefresh.sh.in: flushrefresh and other SWMR tests have been failing occasionally but regularly since bringing them to the develop branch. The logs and debugging point to unexpected deletion of signal files as the point of failure, and John Mainzer suggests that two such tests running simultaneously in the same directory may lead to the operating system deleting the other test's signal file. Running the flushrefresh test in its own directory seems to solve the problem.
* Correct double sourcedir name on copied datafiles.Quincey Koziol2017-03-151-6/+2
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* Final merge of page buffering branch to developQuincey Koziol2017-03-1443-3068/+8414
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* Bring changes to I/O parameters from page_buffering branch.Quincey Koziol2017-03-131-28/+31
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* Merge in reentrency changes to "make space in cache" from page_buffering branch.Quincey Koziol2017-03-132-51/+695
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* Minor cleanups and bring over "prefetched dirty" fixes for entries loaded fromQuincey Koziol2017-03-123-3/+61
| | | | a cache image.
* Fix alignmentAllen Byrne2017-03-081-9/+9
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* Fix vds testsAllen Byrne2017-03-071-9/+28
| | | | java wrong call vds test - missing checks and if content
* Merge pull request #321 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-03-022-10/+10
|\ | | | | | | | | | | | | | | * commit 'f4dd30f41ccee7bcd97fba065573c5201cbcc743': Update CMake formatting Update CMake files and formatting HDFFV-10120 verify nozlib checking with tools tests cmake non-code typo
| * Update CMake files and formattingAllen Byrne2017-03-012-9/+9
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| * cmake non-code typoAllen Byrne2017-03-011-1/+1
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* | Merge pull request #319 in HDFFV/hdf5 from merge_page_buffering_07 to developQuincey Koziol2017-03-029-125/+23
|\ \ | | | | | | | | | | | | * commit '5df52404bc6f6323ebf064b3d82b8e683de96eba': Misc. small cleanups to sync against incoming page buffering changes.
| * | Misc. small cleanups to sync against incoming page buffering changes.Quincey Koziol2017-03-029-125/+23
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* | Added "flush" and "refresh" to testflushrefresh.sh error output soDana Robinson2017-03-021-2/+2
|/ | | | it's easier to see where errors in the script occur.
* Correct issues from pull request reviews.Quincey Koziol2017-02-281-1/+1
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* Corrected version of 4b5e05c084f93c35dae946c2c9e814d565a613b0:Quincey Koziol2017-02-284-48/+26
| | | | | Fix some more signed -> unsigned value issues with cache data structures, also misc. style cleanups. All to align w/incoming page_buffering changes.
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