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* Hdf5 1 10 Update license url (#403)Larry Knox2021-03-01195-195/+195
| | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Modify temporary rpath for testing in java example scripts. (#230) * Fix undefined left shifting of negative numbers (#338) Undefined Bahavior Sanitizer errored here about left shifting negative numbers. * Update license url (#332) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories. Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Sean McBride <sean@rogue-research.com>
* Merge "Fix undefined left shifting of negative numbers" (#338) to hdf5_1_10 ↵Larry Knox2021-02-231-2/+2
| | | | | | | | | | | | | | | | | | (#370) * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Modify temporary rpath for testing in java example scripts. (#230) * Fix undefined left shifting of negative numbers (#338) Undefined Bahavior Sanitizer errored here about left shifting negative numbers. Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Sean McBride <sean@rogue-research.com>
* Port PR #291 to 1.10 branch: Allow using virtual datasets in files opened ↵Neil Fortner2021-02-081-2418/+2515
| | | | | | | | | | with H5F_CLOSE_SEMI and H5F_CLOSE_STRONG (#323) * Modify VDS code to always open source files with H5F_CLOSE_WEAK close (#291) degree. Add test cases to VDS test for this, and reduce the amount of output from that test. * Run formatter on H5Dvirtual.c and test/vds.c
* 1 10 changes for sanitize=address (#313)Allen Byrne2021-02-051-9/+9
| | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop
* 1 10 merges from develop (#298)Allen Byrne2021-02-046-11/+29
| | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms
* 1 10 Whitespace changes after clang-format run (#287)Allen Byrne2021-01-291-1/+1
| | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes
* Correct TARGET variable and CMake config file locationAllen Byrne2020-11-121-1/+1
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* Close test allocationsAllen Byrne2020-10-211-0/+14
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* OESS-98 add CMake option to build plugins project within hdf5Allen Byrne2020-10-162-18/+18
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* Source formattedAllen Byrne2020-10-01177-110370/+120072
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* Merge of clang-format changes from developAllen Byrne2020-09-3013-1345/+1555
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* Removes unused H5I_SPACE_SEL_ITER value from H5I_type_tDana Robinson2020-08-272-3/+0
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* Fixes typo and return types in version bounds testDana Robinson2020-08-181-7/+7
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* Refactors the 1.10 reference/selection bounds testsDana Robinson2020-08-1813-1/+357
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* Merge pull request #2799 in HDFFV/hdf5 from ↵Larry Knox2020-08-181-0/+3
|\ | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr2020:hdf5_bmr2020_addrsani_110 to hdf5_1_10 * commit 'ede1b9b1dd53caad6dfce8ec7bc4aa7b3dbce62c': Fix HDFFV-11101
| * Fix HDFFV-11101Binh-Minh Ribler2020-08-181-0/+3
| | | | | | | | | | | | | | | | | | | | Description Added initialization to local structs in the src function H5MF_settle_raw_data_fsm() and the test function test_bt2_hdr_fd() to prevent the following error in two different occurrences: MemorySanitizer: use-of-uninitialized-value Platforms tested: Linux/64 (jelly)
* | Merge pull request #2772 in HDFFV/hdf5 from ↵Larry Knox2020-08-181-0/+98
|\ \ | |/ |/| | | | | | | | | | | ~BMRIBLER/hdf5_bmr:hdf5_bmr_HDFFV-10933_110 to hdf5_1_10 * commit '538bdb35ae932a1445f32a04e8173f8805d404f8': Updated for HDFFV-10933 Fixed HDFFV-10933
| * Fixed HDFFV-10933Binh-Minh Ribler2020-08-141-0/+98
| | | | | | | | | | | | | | | | | | | | | | Description: Fixed to allow the creation of a dataset when the combination of type, space, etc doesn't work for filter and the filter is optional. Currently, it was supposed to be skipped as indicated in the documentation, but it was not skipped and the creation failed. The function H5Z_ignore_filters was added and used in H5D__create. Platforms tested: Linux/64 (jelly)
* | Brings H5Fstart_swmr_write changes from developDana Robinson2020-08-181-8/+82
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* | Merge pull request #2797 in HDFFV/hdf5 from ↵Dana Robinson2020-08-181-7/+22
|\ \ | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:1_10_normalization to hdf5_1_10 * commit 'c0a05da7c0189e9f0833f69506bce2775a01aa2b': Adds missing hdfs test changes.
| * | Adds missing hdfs test changes.Dana Robinson2020-08-181-7/+22
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* | | Brings the MDC skiplist optimizations from developDana Robinson2020-08-175-1050/+1324
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* | Removes email and Modifications sectionsDana Robinson2020-08-171-3/+0
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* | Minor normalizations with developDana Robinson2020-08-169-180/+19
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* | Normalizations with developDana Robinson2020-08-162-16/+35
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* | Fixes missing chunk_info entry in CMake filesDana Robinson2020-08-151-0/+1
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* | Even more normalization with developDana Robinson2020-08-1569-249/+302
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* | More normalizations with developDana Robinson2020-08-151-1/+1
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* | Misc normalizations with developDana Robinson2020-08-154-38/+29
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* | Brings monotonic timer changes from developDana Robinson2020-08-153-1/+416
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* | Brings Mirror VFD to 1.10 from developDana Robinson2020-08-146-6/+3313
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* | Brings splitter VFD from developDana Robinson2020-08-145-1/+1296
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* | Brings file locking changes from developDana Robinson2020-08-143-33/+154
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* | Cherry pick of Windows thread-safety fixes from developDana Robinson2020-08-142-15/+16
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* Brings HDFFV-11027 H5S_NO_CLASS fix to 1.10 from developDana Robinson2020-08-111-0/+76
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* Normalization and warning fixes from developDana Robinson2020-07-3124-497/+947
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2020-07-294-1/+179
|\ | | | | | | | | | | * commit '475120abfb493098e907fe40073260f48b35d15d': Supply the appropriate file pointer to H5T_patch_vlen_file() without H5F_VOL_OBJ from develop branch. Merge pull request #2693 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-11080-heap-use-after-free-by-the-call to develop
| * Merge pull request #2693 in HDFFV/hdf5 from ↵Vailin Choi2020-07-214-1/+179
| | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-11080-heap-use-after-free-by-the-call to develop * commit '3023b34272cc6ada84aebfa7441a6a55afa3621c': Update MANIFEST. Add new test to Cmake. Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
* | Merge from dev of tools changesAllen Byrne2020-07-221-0/+59
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* Brought over thread-safety changes from develop.Dana Robinson2020-07-206-5/+356
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* Merge of dataspace improvements from develop.Dana Robinson2020-07-166-570/+2187
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* Normalization of H5S package with developDana Robinson2020-07-081-15/+15
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* Merge pull request #2657 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2020-06-221-3/+3
|\ | | | | | | | | | | | | hdf5_1_10 * commit 'e64ed323db7c98a246d3386a146f87003886040a': Merge pull request #2656 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:changes_1_12_merge to hdf5_1_12
| * Merge pull request #2656 in HDFFV/hdf5 from ↵Larry Knox2020-06-211-3/+3
| | | | | | | | | | | | | | | | | | ~LRKNOX/hdf5_lrk:changes_1_12_merge to hdf5_1_12 * commit '538b1317646f52658c2a896bbde4dce4246a9761': Squashed commit of the following: Addition of clang-warnings flags Update examples/teth5cc.sh.in for version 1.10.
* | H5PB and H5Faccum normalization with develop.Dana Robinson2020-06-041-3/+3
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* | H5F normalizations with develop.Dana Robinson2020-06-041-24/+30
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* Some normalization with develop in testhdf5 files.Dana Robinson2020-05-285-359/+416
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* Removed trailing whitespace from source files.Dana Robinson2020-05-2630-215/+215
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* Moved srcdir changes over from develop.Dana Robinson2020-05-203-49/+77
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* Brought the dsets test in line with develop. Brings over the fixDana Robinson2020-05-201-257/+815
| | | | for 0-size dataset metadata allocation.
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