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| | * | Code cleanup and refactorBinh-Minh Ribler2019-08-291-68/+47
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| | * | HDFFV-10677 and HDFFV-10661Binh-Minh Ribler2019-08-283-3/+1941
| | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Added functions to query chunk information: H5Dget_num_chunks(dset_id, fspace_id, *nchunks) Gets the number of written chunks that intersect with the given dataspace. However, in this version, the intersection is not yet completed. Thus, the number of all written chunks will be returned. H5Dget_chunk_info_by_coord(dset_id, *offset, *filter_mask, *addr, *size) Given a chunk's logical coordinates, returns the chunk's filter, address, and size. H5Dget_chunk_info(dset_id, fspace_id, index, *offset, *filter_mask, *addr, *size) Given a chunk's index, returns the chunk's logical coordinates, filter, address, and size. The chunk belongs to a set of chunks that have nonempty intersection with the specified dataspace. However, in this version, the intersection is not yet completed, and the index is of all the written chunks. These functions comply with VOL. - Fixed some oversights found in the library for the tests in chunk_info.c to work correctly. The returned value from a callback function was not checked in H5EA_iterate(), H5FA_iterate(), and H5D__none_idx_iterate(). This oversight caused a callback function to continue iterating even though it's supposed to stop. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
| | * OESS-29 Update HD prefix mostlyAllen Byrne2019-08-2412-276/+256
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| | * Merge branch 'develop' into shared_file_ptrQuincey Koziol2019-08-2160-17385/+17202
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| | | * Untangle #ifdef mess in ROS3 code.Dana Robinson2019-08-203-239/+56
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| | | * Add missing HD prefixAllen Byrne2019-08-181-121/+121
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| | | * Update HD prefix and reconcile hl/cpp testAllen Byrne2019-08-161-1/+1
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| | | * Add HD prefix to testsAllen Byrne2019-08-1559-17141/+17141
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| | * | Begin converting the H5MF interface to use shared file pointers insteadQuincey Koziol2019-08-211-21/+18
| | | | | | | | | | | | | | | | of top file pointers.
| | * | Rest of changes for 'top' file pointer to 'shared' file pointer for H5F__accumQuincey Koziol2019-08-191-1/+1
| | | | | | | | | | | | | | | | routines.
| | * | Partial H5F__accum_* routines.Quincey Koziol2019-08-191-2/+2
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| | * Correct name of folderAllen Byrne2019-08-151-1/+1
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| | * Mostly whitespace in testpar, addl changes for tmp dirAllen Byrne2019-08-156-151/+152
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| | * Merge pull request #1872 in HDFFV/hdf5 from ↵Jake Smith2019-08-143-461/+367
| | |\ | | | | | | | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:bugfix/ros3_hdfs_warns_squashed to develop * commit '2e5cd3d2b2d953420252c80ab5e32ac95ac0c5b3': Fix compiler warnings with diabled ROS3 and HDFS VFDs. Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example.
| | | * Fix compiler warnings with diabled ROS3 and HDFS VFDs.Jacob Smith2019-08-143-461/+367
| | | | | | | | | | | | | | | | | | | | | | | | Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example.
| | * | Merge pull request #1871 in HDFFV/hdf5 from ↵Ray Lu2019-08-144-5/+5
| | |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:bugfix/directory_name_develop to develop * commit '0b868668bac0d268120844adb9ad216a9a8e1395': Changed the directory name left out from the previous commit. Changed the name of the temporary directory from 'tmp' to a special name to avoid possible conflicts.
| | | * | Changed the directory name left out from the previous commit.Songyu Lu2019-08-141-1/+1
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| | | * | Changed the name of the temporary directory from 'tmp' to a special name to ↵Songyu Lu2019-08-144-4/+4
| | | |/ | | | | | | | | | | | | avoid possible conflicts.
| | * | HDFFV-10879 fix test varnameAllen Byrne2019-08-141-1/+1
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| | * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-08-133-1/+19
| | |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'aeb145428f5e6bc51742fff031b0cf8cf6fbefbb': Updated h5trav.c to emit output that doesn't require ddl changes for map support. Fixed Map API CMake option Renamed H5Mdelete_key to H5Mdelete and H5Mset to H5Mput. Added ifdef for intel compilers, __GNUC__ has to be defined for header files which use it to work with intel compilers. This gives a warning for intel compiler about fallthrough, so added a check not to include fallthrough if using intel compilers. Added the map (H5M) API
| | | * Added the map (H5M) APIDana Robinson2019-08-133-1/+19
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| | * | Remove old codeAllen Byrne2019-08-131-5/+0
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| | * | Correct error test spelling and useAllen Byrne2019-08-133-103/+136
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| | * HDFFV-10879 fix reference fileAllen Byrne2019-08-121-1/+1
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| | * Add option to explicitly disable extra testsAllen Byrne2019-08-071-0/+2
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| | * Cleanup HD prefixAllen Byrne2019-08-053-909/+557
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| | * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-08-053-680/+762
| | |\ | | | | | | | | | | | | | | | | | | | | | | | | * commit '5fe1216a4e6af8feef0551f7bece8a0e193310a9': Fix return type for H5Sselect_intersect_block(). Updated H5TRACE macro. Add H5Sselect_shape_same and H5Sselect_intersect_block API routines, along with tests and minor cleanups and refactorings.
| | | * Merge pull request #1819 in HDFFV/hdf5 from ~KOZIOL/hdf5:develop to developQuincey Koziol2019-08-043-680/+762
| | | |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '905d40aa6f6eb603c5507e7967130760e3a2e43c': Fix return type for H5Sselect_intersect_block(). Updated H5TRACE macro. Add H5Sselect_shape_same and H5Sselect_intersect_block API routines, along with tests and minor cleanups and refactorings.
| | | | * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~koziol/hdf5 ↵Quincey Koziol2019-07-307-21/+6835
| | | | |\ | | | | | | | | | | | | | | | | | | into develop
| | | | * | Add H5Sselect_shape_same and H5Sselect_intersect_block API routines, alongQuincey Koziol2019-07-303-680/+762
| | | | | | | | | | | | | | | | | | | | | | | | with tests and minor cleanups and refactorings.
| | * | | | Merge reconciliation and VFD test fixesAllen Byrne2019-08-047-310/+306
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| | * | | Fix VFD tests and repackAllen Byrne2019-08-031-1/+0
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| | * | | Fix conflicting types for reset_raw_data_files() parameter in ↵Larry Knox2019-08-013-8/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | external_common.c changed from int to hbool_t. Change 0 and 1 to FALSE and TRUE in calls to reset_raw_data_files().
| | * | | Fix missing export tagAllen Byrne2019-07-311-2/+10
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| | * | | Mostly whitespace cleanup and consistent test formatAllen Byrne2019-07-311-2413/+1407
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| | * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-07-311-1/+1
| | |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '363217073750d07e0eeb0aac2b404a799fda9f7a': Update COPYING file. Remove hdfs from list of vfds for check-vfd testing as it is read-only. Fixed the MANIFEST
| | | * | | Update COPYING file.Larry Knox2019-07-301-1/+1
| | | | |/ | | | |/| | | | | | | | | | | Remove hdfs from list of vfds for check-vfd testing as it is read-only.
| | * | | Merge cleanup mostly whitespaceAllen Byrne2019-07-306-961/+960
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| | * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-07-297-21/+6835
| | |\ \ \ | | | |/ / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'f97e11e7635a0cd8728d4604ca5dceb3925ba44c': Update comment and check for strtoumax. Modify CMakeLists.txt file for renamed h5tools_test_utils files. Add HD to string functions. Switched strtoul to strtoumax in H5FDs3comms.c. Removed unused functions and variables in s3 and hdfs TestH5Pfapl*.java. Update Copyright headers. Squashed commit of the following:
| | | * | Add HD to string functions.Larry Knox2019-07-263-27/+27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Switched strtoul to strtoumax in H5FDs3comms.c. Removed unused functions and variables in s3 and hdfs TestH5Pfapl*.java. Update Copyright headers.
| | | * | Squashed commit of the following:Larry Knox2019-07-257-21/+6835
| | | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Merge changes from update_merged_S3_HDFS branch into develop. commit d5034315aea88629929ac0c9c59ebfafd5f21a31 Merge: 9c48823 d3fdcd8 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jul 25 08:24:53 2019 -0500 Merge branch 'develop' into update_merged_S3_HDFS
| | * | HDFFV-10529 Update CMake tests to use test fixturesAllen Byrne2019-07-233-185/+61
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| | * Correct format of drive checkAllen Byrne2019-07-221-5/+9
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| | * HDFFV-10845 fix comment syntaxAllen Byrne2019-07-211-2/+2
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| | * HDFFV-10845 Windows drive can only goto ZAllen Byrne2019-07-211-946/+950
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| | * HDFFV-10845 use of TARGETFILE disables auto emulatorAllen Byrne2019-07-174-23/+43
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| | * HDFFV-10845 fix configure check and PATHsAllen Byrne2019-07-172-3/+3
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| | * HDFFV-8631 mingw is different platformAllen Byrne2019-07-171-2/+2
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| * | Change print calls to HD-wrapped.Jacob Smith2019-09-231-3/+2
| | | | | | | | | | | | Minor formatting tweaks (inc. regressions and in-file style-matching).
| * | Merge branch 'develop' of ↵Jacob Smith2019-07-2253-904/+1088
| |\ \ | | |/ | | | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into bugfix/repack_external_storage
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