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* [svn-r6834] Purpose:Albert Cheng2003-05-081-3/+16
| | | | | | | | | | | | | | | | | Feature change Description: HDF5_PARAPREFIX has been default to various values like /tmp, /var/tmp, ... None of these solve all problems and all of them created new problems. For LLNL GPFS, '.' is more appropriate since they can do the build right inside gpfs. Same for NCSA Copper. The special setting for Janus is still retained since that is a one of a kind machine and the uses could use all the help. Platforms tested: h5committested (using sol instead of arabica) plus eirene(pp). Misc. update:
* [svn-r6825] Purpose:Quincey Koziol2003-05-077-868/+1010
| | | | | | | | | | | | | | | | | | | | | | | | | New feature/enhancement Description: Chunked datasets are handled poorly in several circumstances involving certain selections and chunks that are too large for the chunk cache and/or chunks with filters, causing the chunk to be read from disk multiple times. Solution: Rearrange raw data I/O infrastructure to handle chunked datasets in a much more friendly way by creating a selection in memory and on disk for each chunk in a chunked dataset and performing all of the I/O on that chunk at one time. There are still some scalability (the current code attempts to create a selection for all the chunks in the dataset, instead of just the chunks that are accessed, requiring portions of the istore.c and fillval.c tests to be commented out) and performance issues, but checking this in will allow the changes to be tested by a much wider audience while I address the remaining issues. Platforms tested: h5committested, FreeBSD 4.8 (sleipnir) serial & parallel, Linux 2.4 (eirene)
* [svn-r6821] Elena Pourmal2003-05-061-4/+4
| | | | | | | | | | | | | | | Purpose: Cray T3E maintenance with Raymond's help Description: fillval test failed for compact dataset since the size of the dataset was bigger than 64K. Solution: Reduced the dataspace of the compact dataset to 1024 elements. Platforms tested: T3E; it was also tested with semi-manual h5committest. (I had to built and test manually on modi4 parallel because of some weird failure of h5committest on modi4) Misc. update:
* [svn-r6808] Purpose:Pedro Vicente Nunes2003-05-062-10/+15
| | | | | | | | | | | | | | | | | | | | | code warrior fix Description: eliminate the CW failure on getname.c restrict the H5_NO_FILE_SHARING just to the test file_close of testhdf5 test Solution: the CW failure on getname.c can be eliminated if a unmount of the file is made before closing it on tfile.c the failure is due to the file sharing flag of CW, and the test is maintained as before Platforms tested: Windows 2000 (octopus) Linux 2.4 (rockaway) SunOS 5.7 (arabica) IRIX 6.5 (modi4) Misc. update:
* [svn-r6805] Purpose:Quincey Koziol2003-05-062-17/+0
| | | | | | | | | | | | | | Revert last change (at least temporarily) Description: Revert last "NO_SHARED_WRITING" ifdefs after reviewing the tests that were ifdef'ed out. I don't think that these tests should cause a problem, so I would like them reviewed again to see if there is a file handle leak in the library (or test). Platforms tested: FreeBSD 4.8 (sleipnir) Triple check not needed.
* [svn-r6804] Purpose:Quincey Koziol2003-05-061-40/+44
| | | | | | | | | | | | Code restructure. Description: Restructured tests so they shouldn't depend on shared open()'s and can be tested with CodeWarrior Platforms tested: FreeBSD 4.8 (sleipnir) Triple check not needed.
* [svn-r6798] Purpose:Pedro Vicente Nunes2003-05-053-7/+22
| | | | | | | | | | | | | | | | | | | code warrior port Description: added a flag H5_NO_SHARED_WRITING, it is defined only for CW in the H5pubconf.h this avoids doing some tests for CW that fail on shared writing Solution: Platforms tested: windows (cw and ms) Linux 2.4 (rockaway) SunOS 5.7 (arabica) IRIX 6.5 (modi4) Misc. update:
* [svn-r6791] Elena Pourmal2003-05-011-2/+2
| | | | | | | | | | | | | | Purpase: Fortran Windows DLL support Description: Fortran test uses functions h5_fixname and h5_cleanup from h5test.c. Those were not exported, and Fortran could not link while using DLLs. Solution: Added H5_DLL to functions prototype to export them from C DLL. Platforms tested: Windows, h5committested. Misc. update:
* [svn-r6780] Purpose: Backward compatibility changeRaymond Lu2003-04-291-10/+8
| | | | | | | | Description: 1.4 compatibility for H5G_obj_t type and H5Zregister test. Solution: use macro H5_WANT_H5_V1_4_COMPAT Platforms tested: h5committest
* [svn-r6779] Purpose: Backward compatibility changeRaymond Lu2003-04-292-2/+10
| | | | | | | | Description: 1.4 compatibility for H5G_obj_t type and H5Zregister test. Solution: use macro H5_WANT_H5_V1_4_COMPAT Platforms tested: h5committest
* [svn-r6776] Purpose:Pedro Vicente Nunes2003-04-291-1/+1
| | | | | | | | | | | | | | | removed and change comments Description: removed the modification comment about the while loop, it is not sufficiently important to be there changed the "Id to name" comment in the test description, it was incorrecly about other thing Solution: Platforms tested: none , just comments Misc. update:
* [svn-r6773] Elena Pourmal2003-04-291-1/+1
| | | | | | | | | | | | | | | | | | Purpose: Windows maintenance and code cleanup Description: There were a lot of places in the source code where varibale was declared but never used. Solution: Cleaned the source code to avoid warnings on Windows and Unix platforms. Platforms tested: arabica, modi4, Windows Probably my environment is wrong on Linux, cannot compile at all when fortran is enabled If daily tests fails tomorrow, this will be my fault but I want to go home now :-) Misc. update:
* [svn-r6757] Elena Pourmal2003-04-251-2/+2
| | | | | | | | | | | | | | | | Purpose: Bug fix Description: on Cray T90IEEE compact storage test (in test_misc8) fails since dataset dimensions are too big; dataset will not fit into the message header. Solution: Reduced dimension sizes from 100 to 50. Platforms tested: h5committested on arabica and mod4; verbena failed because of the F90 license problem. I tested on verbena by hand and C only; Cray T90IEEE Misc. update:
* [svn-r6756] Raymond Lu2003-04-251-3/+48
| | | | | | | | | | | Purpose: Verify library behavior Description: A file is first opened as read only. Then it's closed with an object left open. A second open of the same file for read and write should fail. Platforms tested: arabica - simply test to verify correct library behavior.
* [svn-r6750] Purpose:Quincey Koziol2003-04-251-5/+5
| | | | | | | | | | | | | | Code cleanup Description: Christi Forsythe reported that the NGROUPS macro in this file was causing a macro redefinition warning on the QT machine. Solution: Rename NGROUPS to UNLINK_NGROUPS Platforms tested: Eyeballed, too trivial for triple check.
* [svn-r6730] Raymond Lu2003-04-222-1/+236
| | | | | | | | | | Purpose: New tests added. Description: test VL data for compact dataset; test compact dataset's maximal size. Platforms tested: h5committested
* [svn-r6722] Purpose:Pedro Vicente Nunes2003-04-211-3/+1
| | | | | | | | | | removed specific code warrior debugging information Platforms tested: code warrior Misc. update:
* [svn-r6720] Purpose:Bill Wendling2003-04-211-3/+39
| | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix Description: A resource leak happened if the H5Fget_access_plist() function was called. What was happening: the driver ID and info parts of the property list copied in H5Fget_access_plist were being overwritten, but those properties were copied initially, so we lost information. Added calls to the H5Fget_access_plist function to get the PList and then immediately close it. It would cause an infinite loop if there is a resource leak. Solution: Before copying over those values, call the H5F_acs_close() function to close those values. Platforms tested: Modi4 (Parallel & Fortran) Arabica (Fortran) Verbena (Fortran & C++) Misc. update:
* [svn-r6690] Robert E. McGrath2003-04-161-19/+17
| | | | | | | | | | | | | | | | | | Purpose: Fix bug in ntypes.c test. Description: Large arrays on stack break MacOSX Solution: Move arrays to static variables. Platforms tested: pommier sol modi4 Misc. update:
* [svn-r6688] Purpose:Bill Wendling2003-04-161-0/+6
| | | | | | | | | | | | | | | | | Bug Fix Description: When using the STDIO driver, the dsets test would fail. Solution: Need to flush the data to disk before doing an HDopen call. Platforms tested: Modi4 (Parallel & Fortran) Arabica (Fortran) Verbena (Fortran & C++) Misc. update:
* [svn-r6686] Elena Pourmal2003-04-151-2/+3
| | | | | | | | | | | | | | | | | Purpose: Windows port Description: Windows cannot convert from _uint64_t to double. One of the tests (test_set_local) used conversion to fill a data buffer. Compilation failed on Windows. Solution: Fixed the code not to use conversion Platforms tested: CRAY T90IEEE, arabica, modi4 with parallel, Windows 2000 Only static tests (both debug and release) passed on Windows. DLLs have multiple problems ;-) Misc. update:
* [svn-r6666] Purpose:Quincey Koziol2003-04-143-6/+0
| | | | | | | | | | | | | | | | Code cleanup Description: Clean up comments, etc. Platforms tested: FreeBSD 4.8 (sleipnir) w/C++ Linux 2.4 (burrwhite) w/FORTRAN Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/parallel & FORTRAN (h5committest not run due to my ongoing difficulties with C++ on burrwhite).
* [svn-r6665] Purpose:Quincey Koziol2003-04-141-6/+647
| | | | | | | | | | | | | | | | New feature. Description: Added tests to verify correct operation of re-using file space. Platforms tested: FreeBSD 4.8 (sleipnir) w/C++ Linux 2.4 (burrwhite) w/FORTRAN Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/parallel & FORTRAN (h5committest not run due to my ongoing difficulties with C++ on burrwhite).
* [svn-r6664] Purpose:Quincey Koziol2003-04-141-6/+7
| | | | | | | | | | | | | | | | Code cleanup Description: Added macro for reporting line #'s of test failures more easily. Platforms tested: FreeBSD 4.8 (sleipnir) w/C++ Linux 2.4 (burrwhite) w/FORTRAN Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/parallel & FORTRAN (h5committest not run due to my ongoing difficulties with C++ on burrwhite).
* [svn-r6663] Purpose:Quincey Koziol2003-04-141-19/+18
| | | | | | | | | | | | | | | | Bug fix Description: Return correct value (1 instead of -1) on test failure. Platforms tested: FreeBSD 4.8 (sleipnir) w/C++ Linux 2.4 (burrwhite) w/FORTRAN Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/parallel & FORTRAN (h5committest not run due to my ongoing difficulties with C++ on burrwhite).
* [svn-r6662] Purpose:Quincey Koziol2003-04-142-5/+9
| | | | | | | | | | | | | | | | Code cleanup Description: Switched some system/library calls to use wrappers. Platforms tested: FreeBSD 4.8 (sleipnir) w/C++ Linux 2.4 (burrwhite) w/FORTRAN Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/parallel & FORTRAN (h5committest not run due to my ongoing difficulties with C++ on burrwhite).
* [svn-r6632] Purpose:Quincey Koziol2003-04-112-3/+108
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix Description: This fixes a bug in the low-level metadata caching code in the library which could possibly lose metadata during file I/O when a lot of objects are inserted into a group. This also fixes a couple of (similar) fencepost bugs in the B-tree deletion code. Solution: For the metadata bug - call the low-level driver's 'write' routine instead of H5FD_write. For the B-tree bug - include the correct number of keys. Platforms tested: FreeBSD 4.8 (sleipnir) w/C++ Linux 2.4 (burrwhite) w/FORTRAN Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/FORTRAN & parallel (h5committest is still not working for me on burrwhite) Misc. update:
* [svn-r6613] Purpose:Quincey Koziol2003-04-091-56/+822
| | | | | | | | | | | | | | | | | | | | | | | | Code cleanup & new tests Description: Updated szip and shuffle testing to reflect changes to API functions. Added testing for new API functions: H5Pmodify_filter, H5Pget_filter_by_id and H5Pall_filters_avail. Added testing for "can apply" and "set local callbacks. Cleaned up various things, also. Solution: Platforms tested: FreeBSD 4.8 (sleipnir) w/szip Linux 2.4 (sleipnir) w/szip Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/szip, FORTRAN & parallel Misc. update:
* [svn-r6603] Purpose:Quincey Koziol2003-04-091-3/+4
| | | | | | | | | | | | | | | | | Code cleanup Description: Update dependencies. Solution: Platforms tested: FreeBSD 4.8 (sleipnir) w/szip Linux 2.4 (sleipnir) w/szip Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/szip, FORTRAN & parallel Misc. update:
* [svn-r6601] Elena Pourmal2003-04-081-0/+17
| | | | | | | | | | | | | | | | | | Purpose: This a fix for bug #921 Description: On platforms where big test runs, it creates a set of "solid" 1GB files. Test will take forever (modi4) or will fail if quotas are exceeded. Solution: Default library behavior is to allocate dataset space earlier and to write fill values. I changed the test to use late space allocation and never write fill values. Platforms tested: True64 (PSC), modi4 (sequential and parallel), arabica with 64-bit option(test was skipped there). I also enabled szip and it passed :-) Misc. update:
* [svn-r6597] Purpose:Quincey Koziol2003-04-081-3/+1
| | | | | | | | | | | | | | | Code cleanup Description: Corrected a few comments. Solution: Platforms tested: FreeBSD 4.8 (sleipnir) Linux 2.4 (eirene) Misc. update:
* [svn-r6582] Purpose:Quincey Koziol2003-04-031-351/+46
| | | | | | | | | | | | | | | | | | | | | Code cleanup Description: Updated copyright. Removed szip-specific testing in favor of standard testing, now that bugs in the szip filter are fixed. Updated to latest version of H5Pset_szip API Solution: Platforms tested: FreeBSD 4.8 (sleipnir) IRIX64 6.5 (modi4) w/parallel Misc. update:
* [svn-r6576] Purpose:Quincey Koziol2003-04-031-63/+113
| | | | | | | | | | | | | | Cleanup Description: Update dependencies. Solution: Platforms tested: Linux 2.4 (eirene) Misc. update:
* [svn-r6553] Purpose:MuQun Yang2003-04-011-26/+406
| | | | | | | | | | | | | | | | | | | | | | | | | | | To add tests for szip compression in HDF5 Description: Three tests were added: 1) szip filter itself 3) szip + shuffle + fletch32 2) fletch32 + shuffle + szip Solution: Since H5Dget_storagesize returns 0(Quincey can fix it or it may be gone), I create another function called test_internal_filter_szip, which is the almost the same as test_internal_filter but comments out H5Dget_storage_size function. Platforms tested: Since there are changes of configure.in and configure,I didn't use h5committest. I tested with four platforms. 1) Linux 2.4 (eirene) 2) Solaris 2.7(arabic 3) windows 2000(VS 6.0) 4) SGI IRIX6.5-64(modi4) For test 1)-3), only basic C tests were done For modi4 test, I tested 64-bit C,parallel and fortran. All tests passed, except a warning message from szip library when checksum is used in some order, which doesn't cause any real problems. Misc. update:
* [svn-r6538] Purpose:Bill Wendling2003-03-3161-321/+836
| | | | | | | | | | | | | Update Description: Updated the Copyright statement Platforms tested: Linux (This change is only in the comments, so I just check that the modules still compile) Misc. update:
* [svn-r6525] Purpose:Albert Cheng2003-03-271-0/+2
| | | | | | | | | | | | | | | | New test feature Description: Added the VFD_LIST definition to support the "make check-vfd" tests. Platforms tested: h5committested. Since check-vfd is not invoked by default, I went to each machine to invoke them by hand. The target worked fine but there were errors reported from those driver tests. (Those errors were beyond the scope of this make target test.) Misc. update:
* [svn-r6436] Purpose:Quincey Koziol2003-02-244-11/+1090
| | | | | | | | | | | | | New internal feature Description: Add internal API for building and working with heaps (H5HP). This will be used for the LRU algorithm in the new metadata cache code. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir)
* [svn-r6435] Purpose:Quincey Koziol2003-02-241-2/+3
| | | | | | | | | | | | Code cleanup Description: Added more information to information printed for test failure. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)}
* [svn-r6434] Purpose:Quincey Koziol2003-02-241-9/+15
| | | | | | | | | | | | | | Code cleanup Description: Removed extraneous __FUNCTION__ declaration that was causing warnings on Windows. Updated copyright information. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)}
* [svn-r6433] Purpose:Quincey Koziol2003-02-241-37/+37
| | | | | | | | | | | | | | | Code/comment cleanup Description: Made more information about reference-counted strings private to the H5RS package by trimming the typedef used in H5RSprivate.h and switching from using macros for a couple of operations to using functions. Updated copyright information for a few of these files. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)}
* [svn-r6412] Purpose:Quincey Koziol2003-02-172-51/+107
| | | | | | | | | | Code cleanup Description: Update dependencies and clean up a few warnings. Platforms tested: Linux 2.2 (eirene) w/parallel
* [svn-r6411] Purpose:Quincey Koziol2003-02-173-30/+55
| | | | | | | | | | | | | | | | | | | | | | Code cleanup Description: Clean up miscellaneous warnings which have crept into the code. Fix "_POSIX_C_SOURCE not defined" warning on FreeBSD. Adjust gcc compiler flags to be more concise for production mode. Refactor the H5O code so that there is a stronger boundary between code in the H5O package and code in the library which just calls H5O routines. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) serial & parallel and gcc 2.95.4 & gcc 3.2.2 Misc. update: Update MANIFEST if you add or remove any file.
* [svn-r6400] Raymond Lu2003-02-121-47/+47
| | | | | | | | | | | Purpose: Change feature Description: Switch to Fletcher32 from Adler32 checksum Platforms tested: arabica, eirene, modi4 Misc. update: MANIFEST and RELEASE.txt updated.
* [svn-r6398] Purpose:Quincey Koziol2003-02-121-9/+11
| | | | | | | | | | Code cleanup Description: Clean up some compiler warnings Platforms tested: FreeBSD 4.7 (sleipnir)
* [svn-r6387] Purpose:Quincey Koziol2003-02-104-36/+36
| | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix Description: Metadata cache in parallel I/O can cause hangs in applications which perform independent I/O on chunked datasets, because the metadata cache can attempt to flush out dirty metadata from only a single process, instead of collectively from all processes. Solution: Pass a dataset transfer property list down from every API function which could possibly trigger metadata I/O. Then, split the metadata cache into two sets of entries to allow dirty metadata to be set aside when a hash table collision occurs during independent I/O. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) serial & parallel Misc. update: Updated release_docs/RELEASE
* [svn-r6386] Purpose:Quincey Koziol2003-02-103-5/+6
| | | | | | | | | | | | | | Bug fix Description: The "system scope" for threads isn't supported on all platforms. Solution: Add detection of this feature to the configure script and check for "H5_HAVE_SYSTEM_SCOPE_THREADS" in the appropriate places. Platforms tested: modi4 w/threadsafe
* [svn-r6383] Purpose:Quincey Koziol2003-02-075-110/+147
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | New feature for developers. Description: Added "function stack" tracing to library. This allows developers (there is no public API) to call H5FS_print within the library and get a listing of the functions traversed to reach that point in the library. Eventually, I may add support for reporting the parameters to each function also... Mainly for debugging parallel I/O programs, but I think it will come in handy in other cases also. The function stack tracking is controlled with a configure switch: --enable-funcstack, which defaults to enabled currently. When we branch for 1.6, we should change the default setting on the branch to be disabled. Also, added a destructor to the thread-specific keys when thread-safety is turned on in the library. Otherwise, they were leaking memory and causing difficult to debug errors in threaded programs (like the test/ttsafe test). Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) w/thread-safety enabled. Misc. update: Updated MANIFEST with new files added (src/H5FS.c & src/H5FDprivate.h) Update release_docs/RELEASE with thread-safety bug fix.
* [svn-r6375] Raymond Lu2003-02-041-113/+395
| | | | | | | | | | | Purpose: New feature Description: Added Adler32 checksum as a filter in pipeline Platforms tested: arabica (fortran), eirene (, C++), modi4 (parallel, fortran) Misc. update: Update release_docs/RELEASE.
* [svn-r6330] Purpose:Quincey Koziol2003-01-242-2/+35
| | | | | | | | | | | | | | | Bug Fix Description: When calling H5Fopen with the core VFL driver, but without the H5F_ACC_CREAT flag goes ahead and creates a memory file. Solution: Check for the H5F_ACC_CREAT flag before allowing the memory file to be created. Platforms tested: FreeBSD 4.7 (sleipnir)
* [svn-r6308] Purpose:Quincey Koziol2003-01-212-0/+31
| | | | | | | | | | | | | | | | | Bug fix Description: Currently, when the library encounters an object header message that isn't know, it fails to open that object in the file. Solution: Allow the library to skip over the unknown object header message and continue to process the remaining messages, in the hope that the skipped message isn't important later. If it is important, it will be caught at a higher level of the library. Platforms tested: FreeBSD 4.7 (sleipnir)
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