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* [svn-r20758] I commented out 2 test cases using H5_CANNOT_OPEN_TWICE because ↵Raymond Lu2011-05-051-2/+4
| | | | | | | | they open the same file twice. OpenVMS can't do it. Tested on jam.
* [svn-r20695] Add description for new "external_open_twice" test.Neil Fortner2011-05-021-1/+2
| | | | Tested: jam
* [svn-r20692] Purpose: Fix problem exposed by external link cacheNeil Fortner2011-05-021-2/+245
| | | | | | | | | | | | | Description: When closing an object that had two open id's, the library would previously fail to account for the status of the "holding_file" field, potentially causing the file's "nopen_objs" field to become inconsistent. This caused problems when opening the same object twice through an external link using th external file cache. Modified the library to properly account for the status of the "holding_file" field when closing an object id, even when the underlying "shared" object isn't closed. Tested: jam, koala, heiwa (h5committest)
* [svn-r20661] Bug fix: VMS has trouble to deal with absolute path. I changed ↵Raymond Lu2011-04-281-0/+4
| | | | | | | | dtypes.c to use the file name only. I also updated the current directory path in vms/test/H5srcdir_str.h. Tested on jam and OpenVMS.
* [svn-r20608] OpenVMS complainted about a test case in th5o.c which opened ↵Raymond Lu2011-04-222-0/+6
| | | | | | | the same file twice. VMS doesn't allow it. I used the macro H5_CANNOT_OPEN_TWICE to skip the test case. In th5s.c, I created an attribute but fogot to close it in the test case for zero dimension size. Tested on amani, jam. But I haven't tested on OpenVMS yet.
* [svn-r20552] Description:Quincey Koziol2011-04-191-2/+2
| | | | | | | | | Bring r20551 from trunk to 1.8 branch: Correct 'FILE **' back to 'FILE *' for H5Fget_vfd_handle call. Tested on: FreeBSD/32 6.3 (duty) w/debug (h5committest performed on trunk)
* [svn-r20549] Fixed bug in test/vfd.c (HDFFV-5936) that caused STDIO VFD test ↵Dana Robinson2011-04-181-11/+2
| | | | | | to fail on some platforms. The problem was that the test was a clone of the SEC2 test. The SEC2 test accepts a file descriptor (int) via a void pointer from H5Fget_vfd_handle() whereas the STDIO test needs to accept a FILE pointer. Storing the FILE pointer in an integer failed on some systems. The STDIO test now stores the file handle in FILE pointer and checks it for NULL instead of < 0.
* [svn-r20537] Description:Quincey Koziol2011-04-174-19/+142
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r20535 & r20536 from trunk to 1.8 branch: Add explicit test that checks that the 'fileno' field in H5O_info_t is the same for objects in the same file, whether the file was opened twice or not. Clean up various warnings & code formatting issues. Bring changes from Coverity branch to trunk: r20085: Purpose: Fix coverity issue 793 Description: Modified H5S_hyper_project_simple_higher() to free the entire span list in new_space on failure. r20091: This is a fix for coverity bug #1683. Changed the two printfs to use %lu (unsigned long) for printing "dset_size". r20162: Purpose: Fix coverity issue 785 Description: Modified H5T_enum_nameof() to free "name" on failure if it was allocated. Also clarified some code in H5S_hyper_rebuild_helper(). r20189: Addressed coverity defect 783. H5SL_new_node() in H5SL.c was failing to free space allocated in its first alloc if the second alloc failed. Added a call to H5FL_FREE to address this issue. This is purely to keep coverity happy -- if this code is ever triggered, we have much larger problems. Note that this fix will trigger an unused return value complaint from coverity next week. r20190: Fixed Coverity issues 1561 1565 and 1678 (UNUSED_VALUES) by moving checks of return values to after the function call. r20191: Fixed coverity issues 643 644 and 1678 (CHECKED_RETURN). r20232: Addressed coverity issues 923-925. Replaced calls to sprintf with calls to HDsnprintf. r20233: Fix coverity issue 662. Don't try to sort 0 attributes in H5Aint.c. r20234: Fix coverity issue 664. Check for NULL before dereferencing in H5Gdeprec.c. r20271: Purpose: Fix coverity issue 784 Description: Modified H5_debug_mask() to keep a list of files opened for use as a debugging output stream, and modified H5_term_library to close these files on exit. r20272: addressed coverity issues 838 & 955. Issue was use of strcpy() -- existing code was safe, but modified to use strncpy() to keep coverity happy. r20273: Addresed coverity issues 1388 and 1389. Initialized sel_iter->type to NULL in H5S_select_iter_init. r20275: Purpose: Fix valgrind issue in mf.c Description: Fixed bug (incomplete if statement) in test_mf_fs_alloc_free() so the retrieved node gets freed. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
* [svn-r20531] Purpose: Add testing for bug 1864Neil Fortner2011-04-1527-0/+173
| | | | | | | | | Description: Added internal tesitng routines to traverse a file and verify that symbol table information is *always* cached, whenever possible. Added this check to the end of many tests to check all the test files, right before the call to h5_cleanup. Tested: jam, amani, heiwa (h5committest)
* [svn-r20525] Description:Mike McGreevy2011-04-152-98/+107
| | | | | | | | Merge revisions 20475, 20502, and 20504 from trunk to 1.8 branch. Tested: Tested on jam, fred, bangan (CYGWIN), and h5committested.
* [svn-r20517] Description:Quincey Koziol2011-04-153-0/+216
| | | | | | | | | | | | | | | | | | | | | | | | Bring r20513 from trunk to 1.8 branch: Correct several problems with compound datatypes that don't have any fields added: - Change assertion to error report when a file is encountered which has this situation. - Added check to attribute creation to avoid creating attributes with a datatype like this (datasets and named datatypes already have the check) Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
* [svn-r20498] Bug 1386 - allow dimension size to be zero even though it isn't ↵Raymond Lu2011-04-141-0/+8
| | | | | | | | | unlimited. I made a change in H5Sset_extent_simple to forbid setting the dimension size bigger than existing maximal size. In this checkin, I restored it to the previous behavior that any change will wipe out previous record of dimensionality. I brought the changes from the trunk. Tested on jam - a simple change.
* [svn-r20492] Rename H5Frelease_file_cache to H5Fclear_elink_file_cache.Neil Fortner2011-04-131-3/+3
| | | | Tested: Fedora (too minor for full committest)
* [svn-r20489] Bug 1386 - allow dimension size to be zero even though it isn't ↵Raymond Lu2011-04-133-23/+618
| | | | | | | | | | | | | | | | unlimited. I brought the changes from the trunk as below: 1. I added test cases for contiguous, compact, and chunked, and external storage datasets, and also attribute. The test includes dataspace selections. 2. I added a test case of extending dataset of zero dimension size and shrinking back to zero dimension size. 3. I updated the Makefile to include the new data file to be cleaned up. 4. The dataspace code has another bug - when the maximal dimension isn't passed in for H5Sset_extent_simple, it is supposed to be same as the dimension. The current library sets NULL to it. I corrected it and added a test case to it. 5. I corrected the tests of Fortran and C++ for the problem in point 3. Tested on jam, heiwa, and amani.
* [svn-r20481] Description:Quincey Koziol2011-04-121-4/+4
| | | | | | | | | | | Bring r20480 from trunk to 1.8 branch: Remove global variable for the path name in the group traversal code. Also clean up a bunch of compiler warnings. Tested on: Mac OS X/32 10.6.7 (amazon) w/debug & production (h5committested on trunk)
* [svn-r20471] Merged 20453 from trunk (minor fix to quiet compiler warning ↵Dana Robinson2011-04-111-2/+2
| | | | about integer overflow).
* [svn-r20470] Merged 20459 and 20462 (new and updated VFD tests) from trunk.Dana Robinson2011-04-112-69/+333
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* [svn-r20464] Merge cmake changes from trunk r20463, after weekend of tests ↵Allen Byrne2011-04-111-0/+3
| | | | | | on trunk. Tested: local linux
* [svn-r20317] Removed includes which are included with proper config checks ↵Allen Byrne2011-03-241-15/+1
| | | | | | in h5private.h. Tested: local linux, windows
* [svn-r20301] brought revisions 19868:20300 from the 1.8.6_vms branch to the ↵Raymond Lu2011-03-236-4/+29
| | | | 1.8 branch
* [svn-r20261] In my previous checkin (20256), I used H5Gcreate instead of ↵Raymond Lu2011-03-161-1/+1
| | | | | | H5Gcreate2 in my test. I just corrected it. Tested on jam with v16 API as the default.
* [svn-r20256] Bug 2115 - add H5_VERSION_GE and H5_VERSION_LE macros. I added ↵Raymond Lu2011-03-151-0/+69
| | | | | | a new test case to show how to use them. Tested on jam - simple change.
* [svn-r20181] Bug 2115/605 - I added 2 public macros to the H5public.h - ↵Raymond Lu2011-03-031-0/+49
| | | | | | H5_VERSION_GE and H5_VERSION_LE - and put some test cases in tfile.c. Tested on jam - simple change. I did h5committest on the same change for the trunk.
* [svn-r20157] Bring CMake changes to branch up to r20156 from trunkAllen Byrne2011-02-251-10/+11
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* [svn-r20128] Add fortran mod folder to INCLUDE_DIRS for gfortran 4.2.x.Allen Byrne2011-02-211-1/+3
| | | | | | Add test dependicies to correct the order of tests - cmake 2.8.4 bug - but also will improve cmake parallel testing. Tested: local linux, jam
* [svn-r20125] Bug 1586 - the datatype handler created with H5Tencode/decode ↵Raymond Lu2011-02-181-11/+71
| | | | | | had the reference count 0. I fixed it by changing the APP_REF parameter of H5I_register from FALSE to TRUE and added a test case in dtypes.c. The changes to configture.in, tools/misc, tools/lib, config, c++/test, Makefile.am, and fortran are only property changes when I merged from the trunk. Tested on jam. But I tested the same fix in the trunk with h5committest.
* [svn-r20114] Merge r20112 (open_file_pool) into 1_8 branch.Neil Fortner2011-02-175-63/+3736
| | | | Tested: jam (open_file_pool branch tested with h5committest)
* [svn-r20062] Description:Quincey Koziol2011-02-081-22/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r20061 from trunk to 1.8 branch: Bring changes from Coverity branch to trunk: r19930: Fix memory leaks involving VL attributes in h5repack and h5diff. The buffers in copy_attr and diff_attr were not checked for the presence of a vlen before being freed, and vlen storage was never reclaimed. Added checks and calls to H5D_vlen_reclaim(). r19933: Purpose: Fix memory leak in H5L_move_cb() Description: H5L_move_cb copied the source link using H5O_msg_copy() but freed it manually using H5MM_xfree(). Since H5O_link_copy allocates the link using H5FL_MALLOC, this causes the link to be allocated from the free list but is never put back on the free list when it is freed. This prevents the link free list from shutting down properly. Modified H5L_move_cb() and H5L_move_dest_cb() to free the link properly using H5O_msg_free(). r19973: Fix resource leaks by freeing string created by HD5f2string r19974: Issue #345: Inialize buf variable to null Tested on: Mac OS X/32 10.6.6 (amazon) w/debug & production (h5committested on Coverity branch)
* [svn-r20053] Description:Quincey Koziol2011-02-061-31/+61
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r20052 from trunk to 1.8 branch: Clean up Coverity warnings, and fix some style issues: r19735: Fix for memory leak in test/mf found by valgrind. r19736: Fix memory leak in h5repack. The buffer in copy_objects, when copying the entire dataset at once, was not checked for the presence of a vlen, and vlen storage was never reclaimed. Added check and call to H5D_vlen_reclaim(). r19772: Change H5assert() to if (H5T_VLEN != src->shared->type || H5T_VLEN != dst->shared->type) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a H5T_VLEN datatype") r19774: removed unused priv. r19775: removed unused variables r19778: Fix memory leak comparing for variable length data types. r19834: Fixed memory leaks found by valgrind. Memory errors remain for another day. Tested on: Mac OS X/32 10.6.6 (amazon) w/debug & production (h5committested on branch)
* [svn-r20030] Purpose: Fix bug 2131Neil Fortner2011-02-025-112/+1296
| | | | | | | | | | Description: When using the scale-offset filter with floating point data or fill values, big endian machines would save some metadata in the wrong byte order. This caused such datasets to yield incorrect data when read on little endian machines. Fixed the scale-offset filter to always save this metadata in the right byte order (i.e. little endian). Tested: jam, amani, heiwa (h5committedt); fedora, linew
* [svn-r20028] I added some test cases for H5Oset(get)_comment and ↵Raymond Lu2011-01-311-0/+333
| | | | | | H5Oset(get)_comment_by_name. It's related to bug 2130. Tested on jam because I've tested the same change to the trunk with h5committest.
* [svn-r20008] I changed the previous commit from FLOAT to DOUBLE again ↵Raymond Lu2011-01-265-18/+20
| | | | | | | | because Neil prefers to it for fill value test. I updated the data files, too. Tested on linew and jam.
* [svn-r19983] I added a test case for dataset with scale-offset filter into ↵Raymond Lu2011-01-245-40/+426
| | | | | | cross_read.c and updated the data files from BE, LE, and VMS. This is the test for bug 2131 that dataset of FLOAT with scale-offset filter can't be read across BE and LE. Tested on jam and linew.
* [svn-r19906] Windows: Correct how fortran links in CRT library. Also correct ↵Allen Byrne2011-01-041-10/+10
| | | | | | macro use for checking libtype. Tested: Windows
* [svn-r19898] Remove use of /MT compile flag for building static libs and ↵Allen Byrne2010-12-301-9/+0
| | | | programs. Added BUILT_AS_STATIC_LIBRARY define to set the windows import/export defines correctly for static libraries.
* [svn-r19862] Updated libtool to version 2.4, autoconf to version 2.68, and ↵Larry Knox2010-12-011-0/+3
| | | | | | m4 to version 1.4.15. Tested with h5committest on amani, jam and heiwa.
* [svn-r19848] Bug 1917: big test failed especially in Widows.Albert Cheng2010-11-261-131/+277
| | | | | | | | | | | | | | big.c: Changed the test to run Huge Dataset (tens of GB), Xtra large dataset(4GB big), Large dataset (2GB big), or merely 1GB big, depending on if the file system supports sparse file or if it supports larger than 32bigs I/O. H5FDstdio.c: Removed an incorrect condition that whether STDIO VFD supports larger than 32bits I/O depends on the support of fseeko. Windows does not use that. Instead, it uses _fseeki64 to support larger than 32bits I/O. Tested: h5committest, jam (serial).
* [svn-r19832] Bug fix - In the code of N-bit filter, one line (the last line ↵Raymond Lu2010-11-191-0/+383
| | | | | | | | | of H5Znbit.c in H5Z_nbit_compress - "*buffer_size = j + 1;" was mistakenly taken out by someone. It is necessary to update the new size. I put it back and made 2 test cases for integer and float to verify the correct dataset size. Tested on jam, heiwa, and amani.
* [svn-r19824] 1. Made fixes as in rev #19813 in trunk:Vailin Choi2010-11-188-118/+292
| | | | | | | a) Add comments to test_4() in test/external.c about the name "/ link". b) Fix one memory leak in src/H5Lexternal.c: free memory pointed to by tmp_env_prefix for HDF5_EXT_PREFIX case. 3. Made changes for bug #1930 as in rev #19783, #19781 in trunk. 4. Made corresponding CMake changes as in rev #19782 in trunk.
* [svn-r19800] Purpose:Mike McGreevy2010-11-171-0/+17
| | | | | | | | | | | | | | | | | | | | | | | | | Add additional error checking to catch erroneous user input. Description: Attempting to retrieve a links's name by index in the case where the link is external and the file that the object is located in doesn't exist was causing a segmentation fault (in production) and an assertion failure (in debug). The segfault wasn't occuring until the metadata accumulator attempted a write, so I've added error checking higher in the pipeline in H5O_protect (where there was previously just an assert) to catch this. I've also added additional asserts in the H5F layer where there were none. Additionally, I added another case to the links.c test to test that this fails gracefully instead of segfaulting or asserting out. Tested: h5committest and gandalf (mac os x)
* [svn-r19791] CMake: Correct Error tests. Add Deprecated Symbols option.Allen Byrne2010-11-161-5/+41
| | | | Tested: local linux
* [svn-r19705] Added VFD test options.Allen Byrne2010-11-011-2/+66
| | | | Tested: local linux
* [svn-r19703] Removed special fheap timeout - replaced by timeout set in ↵Allen Byrne2010-11-011-5/+0
| | | | | | | | | CTestConfig.ctest Added MemCheck Ignore tests for repeated tools tests Added Debug flag for windows Bring r19702 from trunk
* [svn-r19693] Bug 2008 - IBM Power6 Linux uses special conversion algorithms ↵Raymond Lu2010-10-281-0/+32
| | | | | | | | | to convert some values from long double to (unsigned) long and from (unsigned) long to long double. I added tests in configure.in to detect these algorithms. Before I can figure out them, I disable the tests in dt_arith.c. Tested on jam, heiwa, amani, IBM Power6 Linux machine in Holland (huygens.sara.nl).
* [svn-r19692] added PrintErrorStackOn and PrintErrorStackOff to turn auto ↵Albert Cheng2010-10-282-1/+23
| | | | | | error stack printing on and off.
* [svn-r19671] Description:Quincey Koziol2010-10-271-0/+19
| | | | | | | | | | | | Bring r19668 from trunk to 1.8 branch: Do some extra range-checking on H5Pset_elink_acc_flags() calls. Clean up some minor compiler warnings also. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug & production (too minor to require h5committest)
* [svn-r19655] Description:Quincey Koziol2010-10-212-191/+191
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r19654 from trunk to 1.8 branch: Bring Coverity revisions from branch back to trunk, and clean up some other misc. compiler warnings also. r19500: Fix coverity items 1446 and 1447. Moved up calls to memset in test_cont in ohdr.c so the test never tries to close uninitialized locations. r19501: Fix coverity items 1398-1445. Various uninitialized variable errors in fheap.c. r19502: Fixed coverity issue 579 and some additional warnings in the file as well. r19503: Bug fix: This fix addressed the "RESOURCE_LEAK" problems #789 and 790, run 26 r19504: minor mods to try to keep coverity from flagging false positives. r19505: Fixed coverity issues 566 - 571. Declared variables that are passed to functions that use them as arrays to be arrays of size 1. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug, production & parallel (h5committested on coverity branch)
* [svn-r19653] Put back deleted library check in configure.Allen Byrne2010-10-201-5/+3
| | | | | | Remove shared library check around ws2_32.lib linking in test library. Issue on windows static builds. Tested: windows
* [svn-r19624] Purpose:Mike McGreevy2010-10-181-6/+6
| | | | | | | | | | | | | | - Fix a bug in each of the metadata accumulator source and test code Description: - In accum.c test file, switch dxpl_id used in H5F_accum_* function calls to H5P_DATASET_XFER_DEFAULT (instead of H5AC_dxpl_id), to fix compilation on windows. - Changed boundary checking from <= to < when checking if a read from disk with overlapping dirty metadata in the accumulator has the read ending such that it aligns exactly with the dirty accumulator (line 234 of H5Faccum.c). Tested: - h5committested
* [svn-r19618] Purpose:Mike McGreevy2010-10-154-24/+1843
| | | | | | | | | | Bring metadata accumulator fixes and tests into 1.8 Description: Changes consist of addition of tests for H5Faccum.c source code, as well as some fixes that address some discovered bugs in the metadata accumulator on several corner cases. Tested: h5committested
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