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* [svn-r24112] Description:Quincey Koziol2013-09-062-35/+37
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r24101 & 24111 from trunk to 1.8 branch: r24101: ======= Description: Clean up warnings, enable new compiler warning flag(s) and bring back changes from Coverity branch: r20813: Remove the dead code as listed for coverity bug #1722. h5committested. r20814: Issue 69: Check return value and throw error if negative return. Also free datatype id on error r20815: Use HDstrncpy. --gh r20816: Replaced one last HDstrcat call with HDstrncat to resolve coverity issue 832. r20817: Use HDstrncpy and HDstrncat. --gh r20818: Purpose: Fix valgrind issues with h5jam Description: Modified h5jam to free strings strdup'd in parse_command_line before exit. Note that they may still not be freed in case of error, due to the widespread use of exit(). r20819: Issue 80: change loop to use int as loop index. r20820: Maintenance: Fixed the bug found by coverity CID 788 There were two problems with this function: 1) it tried to unnecessary free NULL pointer 2) it tried to allocate c_name buffer that is done by H5Pget_class_name r24111: ======= Description: Restrict GCC diagnostic pragmas to only gcc 4.6+ Tested on: Mac OSX 10.8.4 (amazon) w/gcc 4.8.1, C++ & FORTRAN (too minor to require h5committest)
* [svn-r24080] Since dtransform.c uses H5T_conv_i_f and H5T_conv_f_i, I added ↵Raymond Lu2013-08-281-0/+5
| | | | | | them back for OpenVMS. But I took out the test case in dtransform.c which has problem. See Jira issue VMS-8. Tested on jam.
* [svn-r24074] I took out the soft conversion functions H5T__conv_i_f and ↵Raymond Lu2013-08-261-0/+16
| | | | | | | | | H5T__conv_f_i for OpenVMS because they have problem to convert between integers and floating numbers. I also commented out the test case in dt_arith.c for OpenVMS. Tested on jam - simple change.
* [svn-r24072] Merge trunk cmake changes to 1.8 branch. Allen Byrne2013-08-262-528/+557
| | | | | | | Also add default switch blocks to h5import. Merge h5dump any_path option from trunk. Tested: local linux
* [svn-r24032] Description:Quincey Koziol2013-08-204-426/+426
| | | | | | | | | | Bring r24030 from trunk to 1.8 branch: Clean up more compiler warnings. Tested on: Mac OSX/64 10.8.4 (amazon) w/gcc, C++ & FORTRAN (too minor to require h5committest)
* [svn-r24021] Description:Quincey Koziol2013-08-187-587/+560
| | | | | | | | | | Bring r24020 from trunk to 1.8 branch: Clean up compiler warnings Tested on: Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* [svn-r24012] Description:Quincey Koziol2013-08-151-0/+4
| | | | | | | | | | Bring r24011 from trunk to 1.8 branch: Clean up a few warnings Tested on: Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* [svn-r23771] HDFFV-8434,-8437,-8445,-8447,-8461: Merge changes from Trunk.Allen Byrne2013-06-141-0/+13
| | | | Tested: local linux
* [svn-r23719] Description:Quincey Koziol2013-05-291-1/+0
| | | | | | | | | | | | Bring r23713 and r23717 from trunk to 1.8 branch: Clean up warnings, switch library code to use Standard C/POSIX wrapper macros, remove internal calls to API routines, update checkapi and checkposix scripts. Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN Big-Endian Linux/64 (ostrich)
* [svn-r23706] Merge Valgrind fix from trunk.Allen Byrne2013-05-151-0/+3
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* [svn-r23703] Issue 8380 - followup for previous checkin. I forgot to add ↵Raymond Lu2013-05-141-0/+256
| | | | | | test/unregister.c as a new test. No test is needed.
* [svn-r23702] Issue 8380 - H5Zunregister caused seg fault. This is a porting ↵Raymond Lu2013-05-143-7/+20
| | | | | | | | | of code from the trunk. It fixes the problem by first iterating through all opened datasets and groups to see if any of them uses the filter. If it finds one, the function fails with a message. Then the function flushes all opened files. Tested with h5committest.
* [svn-r23696] Description:Quincey Koziol2013-05-112-23/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r23695 from trunk to 1.8 branch: Clean up warnings in H5Tconv.c (down to _only_ 9000 lines of output now!) Merge changes from Coverity branch back to trunk: r20684: Fix for coverity bug #1721 which was due to the fix for coverity bug #943. r20685: Use HDstrncpy. --gh r20761: Purpose: Fix valgrind issues Description: Free image_data and data as appropriate in test_image. r20762: Purpose: Fix coverity issue 600 Description: Add check for return value of H5O_close in H5Ocopy. Also cleaned up various warnings. r20763: Purpose: Fix valgrind issues with h5stat Description: Modified h5stat to free "iter" before exit, and free "hand" before exit if parse_command_line exits directly. r20764: fixed coverity issues: 69, 327, 614, 684, 685, 696, 697, 1681, 967, 826, 660, 80 r20765: Fixed coverity bug 668 Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning. No actual integer overflow tests are performed since it's just a test program but I did add a check that n_elements is >= 1. I also changed an error condition from doing its own close and returning -1 to "goto out;" like the rest of the program. r20766: Fixed coverity bug 667 Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning. No actual integer overflow tests are performed since it's just a test program. Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN (h5committest upcoming)
* [svn-r23551] I updated this branch from the 1.8 branch (not related to DESY ↵Raymond Lu2013-04-042-4/+4
|\ | | | | | | | | | | project) and a few changes for CMake and Windows from the trunk (related to DESY). Tested with desycommittest (emu, koala, jam, ostrich, and ostrich-no-shared-lib), but can't wait for duck to finish. It takes too long.
| * [svn-r23535] Description:Quincey Koziol2013-04-031-2/+2
| | | | | | | | | | | | | | | | | | | | | | Bring r23529 from trunk to 1.8 branch: Stop aliasing property to indicate internal collective metadata operations with property to perform collective raw data operations from the application. Tested on: Mac OSX/64 10.8.3 (amazon) w/parallel (daily tests on trunk)
* | [svn-r23550] Description:Quincey Koziol2013-04-044-52/+49
| | | | | | | | | | | | | | | | | | | | Bring r23549 from trunk to desy_1_8 branch: More misc. cleanups, but main change is to make an "extern" header file for the plugin interface. Tested on: Mac OSX/64 10.8.3 (amazon)
* | [svn-r23539] I took out the "const" symbol from H5PL_get_plugin_type and ↵Raymond Lu2013-04-033-6/+6
| | | | | | | | | | | | H5PL_get_plugin_info functions. Tested on koala - simple change.
* | [svn-r23537] I corrected the copyright information and added some comment in ↵Raymond Lu2013-04-035-45/+31
| | | | | | | | | | | | H5Pocpl.c. Tested on koala - no code change.
* | [svn-r23534] I changed the operation in dynlib2.c from math operations pow ↵Raymond Lu2013-04-031-11/+10
| | | | | | | | | | | | | | | | and sqrt to simpler multiplication and division to avoid potential rounding problem in math operations. Tested on koala - simple change.
* | [svn-r23528] Bug fix: Mac system has dynamic library name in the form of ↵Albert Cheng2013-04-031-5/+47
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | libxyz.dylib. Solution: Changed test_plugin.in to copy library file names in the form of libdynlib{123].*. Another problem: Even when copy failed in copying the libray files (was in the form of *.so*), the test still passed. That was because .libs was included in $HDF5_PLUGIN_PATH and the needed plug in libraries were generated there. Solution: Fixed by copying the plug in library files to separate directories and seetup HDF5_PLUGIN_PATH to include them but NOT .libs. Tested: used desycommittest (duck, emu, jam, koala, ostrich) plus cmakehdf5 in jam.
* | [svn-r23525] I merged the changes r23524 from the trunk.Raymond Lu2013-04-021-6/+45
| | | | | | | | Not tested yet.
* | [svn-r23522] I merged the changes that Allen added for supporting dynlib2.c ↵Raymond Lu2013-04-021-33/+37
| | | | | | | | | | | | and dynlib3.c from the trunk. Not tested. Allen will do it.
* | [svn-r23521] I merged the changes for testing groups with filter into this ↵Raymond Lu2013-04-025-25/+242
| | | | | | | | | | | | branch. Tested on jam and koala.
* | [svn-r23512] Replace install-data-local with install-exec-hook in ↵Larry Knox2013-04-012-8/+9
| | | | | | | | | | | | | | | | test/Makefile.am. Change fixes order of chmod and rm for *dynlib* with parallel make. Tested in trunk.
* | [svn-r23510] I merged the changes for DESY project from the trunk (r23496) ↵Raymond Lu2013-04-018-74/+1170
|/ | | | | | into this 1.8 DESY branch. Tested with h5committest (duck failed with CMake because I don't know how to change test/CMakeLists.txt. I'll wait for Allen to do it).
* [svn-r23343] HDFFV-8322: for valgrind testing, split-up testhdf5 tests by ↵Allen Byrne2013-03-125-4/+44
| | | | | | | | excluding and running long running tests separately. Merged from trunk. Tested: local linux
* [svn-r23337] Bug fix: HDFFV-8305Albert Cheng2013-03-071-1/+4
| | | | | | | | Some systems, like Mac, strings inspect library files and older versions of strings maybe know newer library format, resulting in errors. Make it read the file as stdin, avoiding this problem. Tested: h5committest. all passed.
* [svn-r23324] Snapshot version 1.8 release 11 (snap11)HDF Tester2013-03-041-1/+1
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* [svn-r23298] Bug fix: HDFFV-8267Albert Cheng2013-02-181-1/+1
| | | | | | | | | | The ERROR macro had a typo of missing a separator comma. When used, it seg. fault. Added the comma back in. Fix is reviewed in Crucible HDF5-107. Tested: h5committest passed. Also tested using the ERROR macro in the Mac (Owl) platform. Before fix, it seg. fault. After fix, it prints the message as intended.
* [svn-r23265] Merge revisions 23230, 23234, and 23237 to 1.8 branchNeil Fortner2013-02-131-0/+1028
| | | | | | | | | | | | | Purpose: Implement H5Dscatter and H5Dgather Description: Adds 2 new API functions, H5Dscatter and H5Dgather. H5Dscatter retrieves data from a specified callback function and scatters it into a selection, defined by a supplied dataspace, within a supplied memory buffer. H5Dgather gathers data from a selection within a supplied memory buffer and passes it in a contiguous form to a supplied callback function. Added tests for these functions Tested: jam, ostrich, koala (h5committest); ummon; ummon (1.8)
* [svn-r23220] Description:Quincey Koziol2013-02-023-111/+139
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r23219 from trunk to 1.8 branch: Bring reviewed changes from Coverity branch back to trunk (QK & JK): r20457: Coverity issue 691: return of H5duo could be negative. Fixed by using STDOUT_FILENO and redesign parse_command_line and main to cleanup file allocations. The output_file var is null when using stdout. In cleanup do not close output_file if NULL. r20510: Initialize ufid = -1 and predicate HDclose call on ufid != -1 r20511: Purpose: Fix coverity issue 1715 Description: Free "file" and nested data on failure in H5FD_core_open. r20512: Initialize ifid = -1 and predicate HDclose call on ifid != -1 r20514: Initialize h5fid = -1 and predicate HDclose call on h5fid != -1 r20516: Added else branch to the if (ret_value < 0) check. r20522: Addressed coverity issues 930-933, 850, 836, 835, 1307. All minor potential buffer overwrite bugs, or coverity errors. Fixed by replacing strcpy and sprintf with strncpy and snprintf. r20523: fixed coverity issues 68, 1120, 1116i r20524: Check H5Z_SZIP->encoder_present < 1 assuming 0 represents absence. r20601: Purpose: Fix coverity issues 1703-1705 Description: Modified the cleanup code in test_free in accum.c to reset allocated buffers to NULL after they are freed, and modified the error cleanup code to check if these buffers are NULL before freeing them. Also fixed some unrelated warnings in accum.c. r20602: Use HDsnprintf and HDstrncat r20603: Purpose: Fix coverity issues 808-809 Description: Modified test_core in vfd.c to check the returns from malloc, and keep track of whether points and check are allocated by setting them to NULL when they are not. Added code to free points and check on error if they are not NULL. Also fixed unrelated warnings in vfd.c. r20604: Use HDstrncpy. r20605: Use HDstrncpy and HDstrncat. r20606: Purpose: Fix coverity issue 807 Description: Modified long_compact in stab.c to keep track of whether objname is allocated by setting it to NULL when it is not. Added code to free objname on error if it is not NULL. r20607: Changed string function calls to use versions that specify the string length to fix coverity issues 832 and 839. Tested on: Mac OSX/64 10.8.2 (amazon) (Too minor to require h5committest)
* [svn-r23211] Merge trunk CMake changes for minimum cmake version of 2.8.10. ↵Allen Byrne2013-01-311-1/+1
| | | | | | This was prompted by HDFFV-8227, OS X requires latest version of cmake for proper support. Tested: local linux
* [svn-r23182] I'm merging the changes for DECTRIS project from the trunk ↵Raymond Lu2013-01-211-1/+4
| | | | | | (r23162). Tested on koala, jam, ostrich.
* [svn-r23155] HDFFV-8286: changed comments from // to /* */Allen Byrne2013-01-141-2/+2
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* [svn-r23122] Brought revisions from the trunk into the branch:Scot Breitenfeld2012-12-314-18/+4
| | | | | | | r23116-23118 : HDFFV-2686: Remove the ptExampleVL.c example from the source code HDFFV-422: Change extention of the binary files from hdf5 to h5 Tested: jam (gnu)
* [svn-r22956] I merged from the trunk the conversion function ↵Raymond Lu2012-10-231-9/+93
| | | | | | H5T__conv_enum_numeric (numeric type means integer or floating number) and the C test for it. This is the work for Chicago. The change in fortran/ directory is only some property change. Tested on jam, koala, and ostrich.
* [svn-r22916] Description:Quincey Koziol2012-10-172-106/+56
| | | | | | | | | | | | | | | | | | | | | | | | | Bring r22915 from trunk to 1.8 branch: Bring Coverity changes back to trunk: r20399: Change parse_command_line to free hand structure on error and only "leave()" at end of main. r20400: Purpose: Fix coverity issue 592 Description: Added void cast to call to H5F_sfile_assert_num() in H5F_term)interface(). There is no need to check the return value of this function in general, and there would be nothing to do even if it did fail. r20401: Added free(src_sizes) and free(src_offset). --gh Tested on: Mac OSX/64 10.8.2 (amazon) w/C++, FORTRAN, threadsafe (too minor for h5committest)
* [svn-r22788] HDFFV-8153: Pull POSIX_C_SOURCE define out to separate ↵Allen Byrne2012-09-191-0/+5
| | | | | | variable. Use ADD_DEFINITIONS (${HDF5_EXTRA_C_FLAGS}) in non-fortran CMakeLists.txt folders Tested: local
* [svn-r22759] Description:Quincey Koziol2012-09-136-29/+150
| | | | | | | | | | | | | | Bring r22758 from trunk to 1.8 branch: Bring generic improvements from encode/decode property list branch to the trunk. This includes a better version of the property list comparison routine, cleaned up compiler warnings, and some cleaned up property list callbacks. Also, started on changes to clean up parallel test output, so that it doesn't report successful tests from each process. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, GCC 4.7.x, FORTRAN, C++, threadsafe and parallel (h5committested on trunk)
* [svn-r22724] Convert tests to *.sh.in.Allen Byrne2012-08-285-30/+24
| | | | | | | | Convert configure.in to configure.ac. Align TESTS usage with autotools convention. Update all references from configure.in to configure.ac Tested: h5committest
* [svn-r22711] Updated autotools: autoconf 2.69, automake 1.12.3, m4 1.4.16, ↵Larry Knox2012-08-231-120/+173
| | | | | | libtool 2.4.2 Tested THG machines.
* [svn-r22677] Changes needed to make the default free-list mapping from ↵Vailin Choi2012-08-142-123/+290
| | | | | | H5FD_FLMAP_SINGLE to H5FD_FLMAP_DICHOTOMY. Also changed H5O_copy_search_comm_dt_check() to use H5O_obj_class() to get object type instead of H5O_get_info(...TRUE...) saving time in traversing metadata.
* [svn-r22647] Description:Quincey Koziol2012-08-0911-48/+64
| | | | | | | | | | | Bring r22646 from trunk to 1.8 branch: Changes resulting from Klocwork static analysis tool, from Mark Miller @ LLNL (miller86@llnl.gov). Tested on: Mac OS X/64 10.7.4 (amazon) w/debug, C++ & FORTRAN, using gcc 4.7.x (too minor to require h5committest)
* [svn-r22607] Port test from r22601 from trunk to 1.8 branch. Also remove ↵Neil Fortner2012-07-261-0/+99
| | | | | | | | spurious FUNC_ENTER_PACKAGE_TAG and FUNC_ENTER_STATIC_TAG macros. Tested: jam, koala, ostrich (h5committest), durandal
* [svn-r22583] Description:Quincey Koziol2012-07-161-9/+9
| | | | | | | | | | | Bring r22582 from trunk to 1.8 branch: Refactor ID class registration to be more like how other "class"s in the library are registered, and clean up compiler warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5comittest)
* [svn-r22488] Snapshot version 1.8 release 10 (snap4)HDF Tester2012-06-251-16/+18
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* [svn-r22485] Description:Quincey Koziol2012-06-232-18/+20
| | | | | | | | | | | | | | Merge r22484 from trunk to 1.8 branch: Copy the file image test file from the source directory to the build directory, instead of trying to open the [in-memory] file R/W. Also, clean up a few other test files that were left lying around from other tests. Tested on: MacOSX/64 10.7.4 (amazon) w/debug Too minor to require h5committest
* [svn-r22438] (1) fix for making MEM_GHEAP as MEM_DRAWVailin Choi2012-06-061-9/+41
| | | | | | | | | | | | | | | | | | | | | (2) fix to extend into the aggregator based on threshold (3) fix for the "flavor" logging problem (4) fix for test failures due to the above fixes (5) bug fix for h5stat when h5stat against a non-existing file --Ths line, and th se below, will be ignored-- M test/mf.c M src/H5MFaggr.c M src/H5FDpublic.h M src/H5MF.c M src/H5FDmulti.c M src/H5FDlog.c M src/H5Faccum.c M tools/h5copy/testfiles/h5copytst.out.ls M tools/h5copy/testfiles/h5copy_ref.out.ls M tools/h5stat/testh5stat.sh.in M tools/h5stat/h5stat.c
* [svn-r22412] reduce compiler warnings by removing unreferenced variables and ↵Allen Byrne2012-05-252-3/+1
| | | | | | adding cast Tested: local linux
* [svn-r22394] I forgot to close a few datatypes in test_str_create. I fixed ↵Raymond Lu2012-05-231-0/+5
| | | | | | them in this commit. Tested on jam - very simple change.
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